Lcy11g010280 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g010280
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 11476409 .. 11477351 (-)
RNA-Seq Expression	Lcy11g010280
Synteny	Lcy11g010280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAATGGAAATCTATCTTTATTCATGATCCGATGTACACGACGACAATATTCATCTACAATAAGCCACGTGTCCCACACTTAAAAATAATGAATCACCGAAGAAAATTAACAATAATCAAACTCTATCAAACCATCACAGAAACATACACAAATGGAAAGAAGTTTTTAAATTTTTAAAAAAACACTACAGAAATATCAAATTTTAAATTTAAATTTAAATTAAACAAACACCAAAATGGATCTCAACCCTTCCAGCCATCAATTTCTCCAAAGATCCACCGCCGGCCGGCTGATCCACCGTCTGTGTCAGGATCCCGATTCCGTCAACAAATTTCTCTTAAGCAAACACCGCTGCCAAGAAAGCTCCGGCCACAGCACCACCGACCATGACTGCCCGGCTAACGGTGGCGGCGCCATTTCCTTCCGGTGGGGGTGGCGGCGAGTTGGGTCCAGGGCTGGCGACCGGGACATTTCCTTCCGGTGGTGGTGCCGGCGGCGAGGAAGAGGGTGAAGACGGAGATGAGGCCGGACCCTCCTTCGGTGGCGGAGTCGGAGAGGAGGTCGGTCCTGCCGGCGCCGGAGATGTAGGAGGTGAAGCTGGCGGTTGGCTCGGGGGCGATGATGGTGGGGGAGTGGCGGTTGGTGGGGTGGCCGGTGGTGGGGTTGCCGGTGGTGGGGTGGCCGGAGGAGGGGTGGCGGGAGGTGGGGAGGCGGCGGGAGGAGGAGTAGACGGCGGGGGGACGGCGGGGGTGGTGGGTGGCTGAGCCGGAGCACCAGTGGGAGCCTGAGCCATGGAAGAAGTAGCGAATAAGGCGAAAACGATGAGAAAATGGAAACCCATCTTCATTCTCTCTACCAAACAAAAGATAGAGAGAAAAATTTCAGAAGAGAGAGAAAGAAAGGTGTAGAGAGAGAGAGAGAGAGAAATTGAGTGAAAG

mRNA sequence

AGAAAGAATGGAAATCTATCTTTATTCATGATCCGATGTACACGACGACAATATTCATCTACAATAAGCCACGTGTCCCACACTTAAAAATAATGAATCACCGAAGAAAATTAACAATAATCAAACTCTATCAAACCATCACAGAAACATACACAAATGGAAAGAAGTTTTTAAATTTTTAAAAAAACACTACAGAAATATCAAATTTTAAATTTAAATTTAAATTAAACAAACACCAAAATGGATCTCAACCCTTCCAGCCATCAATTTCTCCAAAGATCCACCGCCGGCCGGCTGATCCACCGTCTGTGTCAGGATCCCGATTCCGTCAACAAATTTCTCTTAAGCAAACACCGCTGCCAAGAAAGCTCCGGCCACAGCACCACCGACCATGACTGCCCGGCTAACGGTGGCGGCGCCATTTCCTTCCGGTGGGGGTGGCGGCGAGTTGGGTCCAGGGCTGGCGACCGGGACATTTCCTTCCGGTGGTGGTGCCGGCGGCGAGGAAGAGGGTGAAGACGGAGATGAGGCCGGACCCTCCTTCGGTGGCGGAGTCGGAGAGGAGGTCGGTCCTGCCGGCGCCGGAGATGTAGGAGGTGAAGCTGGCGGTTGGCTCGGGGGCGATGATGGTGGGGGAGTGGCGGTTGGTGGGGTGGCCGGTGGTGGGGTTGCCGGTGGTGGGGTGGCCGGAGGAGGGGTGGCGGGAGGTGGGGAGGCGGCGGGAGGAGGAGTAGACGGCGGGGGGACGGCGGGGGTGGTGGGTGGCTGAGCCGGAGCACCAGTGGGAGCCTGAGCCATGGAAGAAGTAGCGAATAAGGCGAAAACGATGAGAAAATGGAAACCCATCTTCATTCTCTCTACCAAACAAAAGATAGAGAGAAAAATTTCAGAAGAGAGAGAAAGAAAGGTGTAGAGAGAGAGAGAGAGAGAAATTGAGTGAAAG

Coding sequence (CDS)

ATGACTGCCCGGCTAACGGTGGCGGCGCCATTTCCTTCCGGTGGGGGTGGCGGCGAGTTGGGTCCAGGGCTGGCGACCGGGACATTTCCTTCCGGTGGTGGTGCCGGCGGCGAGGAAGAGGGTGAAGACGGAGATGAGGCCGGACCCTCCTTCGGTGGCGGAGTCGGAGAGGAGGTCGGTCCTGCCGGCGCCGGAGATGTAGGAGGTGAAGCTGGCGGTTGGCTCGGGGGCGATGATGGTGGGGGAGTGGCGGTTGGTGGGGTGGCCGGTGGTGGGGTTGCCGGTGGTGGGGTGGCCGGAGGAGGGGTGGCGGGAGGTGGGGAGGCGGCGGGAGGAGGAGTAGACGGCGGGGGGACGGCGGGGGTGGTGGGTGGCTGA

Protein sequence

MTARLTVAAPFPSGGGGGELGPGLATGTFPSGGGAGGEEEGEDGDEAGPSFGGGVGEEVGPAGAGDVGGEAGGWLGGDDGGGVAVGGVAGGGVAGGGVAGGGVAGGGEAAGGGVDGGGTAGVVGG

Homology

[Close]

BLAST of Lcy11g010280 vs. NCBI nr
Match: XP_031739982.1 (DNA topoisomerase 3-alpha-like [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-26
Identity = 98/128 (76.56%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 4   RLTVAAPFPSGGGGGELGPGLATGTFPSGGGAGGEEEGEDGDEAGPSFGGGVGEEVGPAG 63
           RLT+AAPFPSGGGGG LGPGL  GTFPSGGG GG+E    G E GPSFGG VG E+G  G
Sbjct: 140 RLTLAAPFPSGGGGGGLGPGLFVGTFPSGGGDGGDEV---GGEIGPSFGGAVGGELGDDG 199

Query: 64  AGDVGGEAGGWLGGDD----------GGGVAVGGVAGGGVAGGGVAGGGVAGGGEAAGGG 122
            GDVGGEAGGWLGGDD          GGGVA GGVAGGGVAGGGVAGGGVAGGG+AAGGG
Sbjct: 200 GGDVGGEAGGWLGGDDGGVEAGGGVAGGGVAGGGVAGGGVAGGGVAGGGVAGGGDAAGGG 259

[Close]

BLAST of Lcy11g010280 vs. NCBI nr
Match: KAE8649288.1 (hypothetical protein Csa_023795, partial [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-26
Identity = 98/128 (76.56%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 4   RLTVAAPFPSGGGGGELGPGLATGTFPSGGGAGGEEEGEDGDEAGPSFGGGVGEEVGPAG 63
           RLT+AAPFPSGGGGG LGPGL  GTFPSGGG GG+E    G E GPSFGG VG E+G  G
Sbjct: 11  RLTLAAPFPSGGGGGGLGPGLFVGTFPSGGGDGGDEV---GGEIGPSFGGAVGGELGDDG 70

Query: 64  AGDVGGEAGGWLGGDD----------GGGVAVGGVAGGGVAGGGVAGGGVAGGGEAAGGG 122
            GDVGGEAGGWLGGDD          GGGVA GGVAGGGVAGGGVAGGGVAGGG+AAGGG
Sbjct: 71  GGDVGGEAGGWLGGDDGGVEAGGGVAGGGVAGGGVAGGGVAGGGVAGGGVAGGGDAAGGG 130

The following BLAST results are available for this feature:

BLAST of Lcy11g010280 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g010280 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g010280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739982.1	4.8e-26	76.56	DNA topoisomerase 3-alpha-like [Cucumis sativus]	[more]
KAE8649288.1	4.8e-26	76.56	hypothetical protein Csa_023795, partial [Cucumis sativus]	[more]

BLAST of Lcy11g010280 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g010280.1	Lcy11g010280.1	mRNA