Lcy11g010090 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g010090
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Replication protein a 70 kDa dna-binding subunit b
Location	Chr11: 11190436 .. 11193608 (+)
RNA-Seq Expression	Lcy11g010090
Synteny	Lcy11g010090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTTTTCAAAAACTTGTTTTTGTTTTTGAAATTTGGCTAAAAACTCGGTTGTCTTCTTAACAAAATGAAAACTATTGCAAGGAAATTGAGATAAAACAAATGTAACTTTAAAAAACGATGATTAAACATAACCTTAATTTTAACCTAAACTTTATTTTATATTATTATTTTTTTTCTGGCTATTAAGTAACAAACCATATATATATATATATATAATAATGATTCTTCAAATTAAAAACTCTATTAACAATTCTGAGTTGATGTGCTTAATTGGATATATGTAGTACTAAAAAAGTTGGATATATATGTATACACCACTTTATAAATAATGATTCTTCAAATTAAAAATTCTATTAACTATTCTTAGTTTATGTGTTTTCCACTAAAAAGAGAAAAAGAAAAAGAAAAGCTTCTGTTACTAATCTATAATCTATATCTATATCTATAATCTATAATATATTAAAAAGGGAGAATCCATGAAAAACTTTTTTGGACTGTTATACCCCTCTAAATTTTGAATAATTACCAAAAAGACCTCCACGTTTTAACCCTATAAAGACCTCCACGTTTTTTGGACTGTTATACCCCACAAAATTCAGAATAATTACCAAAAAAACCTTCACATTTTATCCCTGTAAAGACCTCCACGTTTTAACCAAATTTCATTTAATGTATTTAAACTCAAATTTCATTTAATGTATTTAAACTCTTACCGTTTATCTTTCAGATTTACCTTTGTTATTTGATTCCATTAAACTATTTGATTCCATTAAACTTCTTTGTGGTTCTTAAATTACATTAAAACTAATTATTACATATTTCATTCACACGTTAAAACCTACAAATTATTTCCTTAATTAATTGTTTCAATATTAATCATTGACTCTTTAAATTCCAAATGTTACAAAACAAACAAAGTATAAAAAGACACAATTTCATTGTGAGATCCCTATATTGCTACTTCTAAATTCCATATCTGAGCCTTGGTGATTTTGTCCAATTTTTATTCCAGGTATGTTTTGAATCTTTTGGTTATTTCCATTTAAAGTCAGATTTAAGATTACTTTTTGTGCTATTTAATATTTAATTTAATATTTAGTTTAATTCTTTCTATGATACTTAGATGGCAGAGATGGATATGGTGATTAGTGAGCTCAAGCCTTTTCAAAGAGGATGGACCACTAAAGTCAGTGTCGTTAGAAAATTTTGCATCCAGAAATTCAAGACCAAAAAAGGAGATCCACTCAAGGTTCTAAAATTAATAGTAATTGATAAAGAGGTACAATTCAAGTTTTCCCCTCTAAATTAAATTCGTTATCCTATTTATGTAGATTTAATGTTTTCATATTTATCAATGCAGGGAGAAAGTATTCAGATTACTTTGTTCAATGACCTAATTGAAAAATTTGGAGATATTTTTCAAAAGGGAAAAACATATGTGATCCATGATGGTATCATCAAACCAATTGACGTCAGATACATGAGCATTCATCCAAAATTTGAGATTTCATTATCCAAAAACAGTGACGTGAAAGAGGTTGAGGGAGAAAGATTTAATTTGAAAAAGGAAAATTTTTGCAGCTTTGAATCATTGTTGATCGGTAACAGCGAAACGAATACTCCCCCTATAGGTATCTACAATTTTGGTTATGCGTTTTTTATTTTTATATTTTTTTAAATTTTACTAAATTTAAATAATATATTGTGTAAAATTTGTTTCTAGATGTCATAGGTGGAGTGATACAGATAAAGCCCATAATTTTAAGAAAACTACATGATGGCAATTTTTCCAAGAAAAAGGGAAGTTCTACTTATGGACAATAAGTATGTTTCTATTTTTTTAGAACACATTCCATTTAATTTTATATTATGAACTTAATATTTTTCCCTCCTACTGTATACAGGTTTAATACAATGAAATTGACATTATGGGACGATTTAGCTGAAAATGAAGGACAATATCTGGAGGAAAATGGGCAAGCACAAAGTGTTATTGTAATCACCAATGTAAAGCCTACTGAATTTGATGGTATATTTTTTTGTGTTCTAAAAACCATAAACTATTATACTTAATAAATATATTAACTTAAAATTAAATTACAACATTACAGGTGAGATAGCCATATCATCTACGATCATTAGCGTTATTGACATAAATCCTCCCCTTGAGAGAGCAGAACCATTGAAGTGTAGGCAAGTTTTACGAAAAAAATTATTTCATTTTTAAAATTACATTTACAATTTTCTTCAATACATAGAATAAAAATTGTTTTTAGTTTAAATATGCTTTTATATTTAATCTATAATTTTGTGTATCAATGTTTTCTTAGGATGCAAACTCTTATAAAAGACCAAAAGTTGAATGATATTTTATATCCATCCAAAAAGATGATAGAAGCAAAAGAGGTCAACATGGATGACATTATCAAAGGAAAAGTAAGTGACCTATATTGTTCTTTCATTGGAAGAATAATAAAGATACACAACAAAGATAATCCATGGTTTGAAAAATGCAATTCATGCAATGAAAGATTATTTCCTATAGACTACATGCCAACTGCATATTGTACAAAATGTGAGAATGAAAATTCTACATTTACAAGAAAATATGTGTTGAGAATGCTTGTATCTGATGGTGAAGAGGAAAGCTACATAACTCTTTTTTATGCTGCTGATTACATAGTTGGATGCAATGCAACCGAATATTACAATGATCTCAAGGTATATGTTAAAATTTAACTTACATTTTTTGTAAAAATAAAAAAACTAAATTTACTATTTTTTTTTTTGCAGGATAAGAAAAAAGAAAAAAGTAAATATTTTCAGAATTTGGTGGTAGCAGAAGATAAGAAATATTACTTCTTAGTCAGAATGGACAAAACAGGAGAGAGTGATCGTGCACGTAAACAAATAGTTGTTCAAGAAATTTGCAGTGTCATTTCGATGGCTAGCAAAAGACACACAGAAGGTGAAGAAAAGAGAGCGATTGAAACAGAAGAGAACAAAAAACGAGCAAAAGTAACAGAAATGAATTAAATGTTTTTGTTCTCAAGAAGCTTACTTTATGTGTTTTCAATTCTCATATTGTTCTTAGGTGTTTAACATTAATCTCATTGTTCTGAGATATTGTAAGATTTAATTCATGGTTCATTTAATGAAAATTAAGTAAGG

mRNA sequence

GTAGTTTTCAAAAACTTGTTTTTGTTTTTGAAATTTGGCTAAAAACTCGGTTGTCTTCTTAACAAAATGAAAACTATTGCAAGGAAATTGAGATAAAACAAATGTAACTTTAAAAAACGATGATTAAACATAACCTTAATTTTAACCTAAACTTTATTTTATATTATTATTTTTTTTCTGGCTATTAAGTAACAAACCATATATATATATATATATAATAATGATTCTTCAAATTAAAAACTCTATTAACAATTCTGAGTTGATGTGCTTAATTGGATATATGTAGTACTAAAAAAGTTGGATATATATGTATACACCACTTTATAAATAATGATTCTTCAAATTAAAAATTCTATTAACTATTCTTAGTTTATGTGTTTTCCACTAAAAAGAGAAAAAGAAAAAGAAAAGCTTCTGTTACTAATCTATAATCTATATCTATATCTATAATCTATAATATATTAAAAAGGGAGAATCCATGAAAAACTTTTTTGGACTGTTATACCCCTCTAAATTTTGAATAATTACCAAAAAGACCTCCACGTTTTAACCCTATAAAGACCTCCACGTTTTTTGGACTGTTATACCCCACAAAATTCAGAATAATTACCAAAAAAACCTTCACATTTTATCCCTGTAAAGACCTCCACGTTTTAACCAAATTTCATTTAATGTATTTAAACTCAAATTTCATTTAATGTATTTAAACTCTTACCGTTTATCTTTCAGATTTACCTTTGTTATTTGATTCCATTAAACTATTTGATTCCATTAAACTTCTTTGTGGTTCTTAAATTACATTAAAACTAATTATTACATATTTCATTCACACGTTAAAACCTACAAATTATTTCCTTAATTAATTGTTTCAATATTAATCATTGACTCTTTAAATTCCAAATGTTACAAAACAAACAAAGTATAAAAAGACACAATTTCATTGTGAGATCCCTATATTGCTACTTCTAAATTCCATATCTGAGCCTTGGTGATTTTGTCCAATTTTTATTCCAGGTATGTTTTGAATCTTTTGGTTATTTCCATTTAAAGTCAGATTTAAGATTACTTTTTGTGCTATTTAATATTTAATTTAATATTTAGTTTAATTCTTTCTATGATACTTAGATGGCAGAGATGGATATGGTGATTAGTGAGCTCAAGCCTTTTCAAAGAGGATGGACCACTAAAGTCAGTGTCGTTAGAAAATTTTGCATCCAGAAATTCAAGACCAAAAAAGGAGATCCACTCAAGGTTCTAAAATTAATAGTAATTGATAAAGAGGGAGAAAGTATTCAGATTACTTTGTTCAATGACCTAATTGAAAAATTTGGAGATATTTTTCAAAAGGGAAAAACATATGTGATCCATGATGGTATCATCAAACCAATTGACGTCAGATACATGAGCATTCATCCAAAATTTGAGATTTCATTATCCAAAAACAGTGACGTGAAAGAGGTTGAGGGAGAAAGATTTAATTTGAAAAAGGAAAATTTTTGCAGCTTTGAATCATTGTTGATCGGTAACAGCGAAACGAATACTCCCCCTATAGATGTCATAGGTGGAGTGATACAGATAAAGCCCATAATTTTAAGAAAACTACATGATGGCAATTTTTCCAAGAAAAAGGGAAGTTCTACTTATGGACAATAAGTTTAATACAATGAAATTGACATTATGGGACGATTTAGCTGAAAATGAAGGACAATATCTGGAGGAAAATGGGCAAGCACAAAGTGTTATTGTAATCACCAATGTAAAGCCTACTGAATTTGATGGTGAGATAGCCATATCATCTACGATCATTAGCGTTATTGACATAAATCCTCCCCTTGAGAGAGCAGAACCATTGAAGTGTAGGATGCAAACTCTTATAAAAGACCAAAAGTTGAATGATATTTTATATCCATCCAAAAAGATGATAGAAGCAAAAGAGGTCAACATGGATGACATTATCAAAGGAAAAGTAAGTGACCTATATTGTTCTTTCATTGGAAGAATAATAAAGATACACAACAAAGATAATCCATGGTTTGAAAAATGCAATTCATGCAATGAAAGATTATTTCCTATAGACTACATGCCAACTGCATATTGTACAAAATGTGAGAATGAAAATTCTACATTTACAAGAAAATATGTGTTGAGAATGCTTGTATCTGATGGTGAAGAGGAAAGCTACATAACTCTTTTTTATGCTGCTGATTACATAGTTGGATGCAATGCAACCGAATATTACAATGATCTCAAGGTATATGTTAAAATTTAACTTACATTTTTTGTAAAAATAAAAAAACTAAATTTACTATTTTTTTTTTTGCAGGATAAGAAAAAAGAAAAAAGTAAATATTTTCAGAATTTGGTGGTAGCAGAAGATAAGAAATATTACTTCTTAGTCAGAATGGACAAAACAGGAGAGAGTGATCGTGCACGTAAACAAATAGTTGTTCAAGAAATTTGCAGTGTCATTTCGATGGCTAGCAAAAGACACACAGAAGGTGAAGAAAAGAGAGCGATTGAAACAGAAGAGAACAAAAAACGAGCAAAAGTAACAGAAATGAATTAAATGTTTTTGTTCTCAAGAAGCTTACTTTATGTGTTTTCAATTCTCATATTGTTCTTAGGTGTTTAACATTAATCTCATTGTTCTGAGATATTGTAAGATTTAATTCATGGTTCATTTAATGAAAATTAAGTAAGG

Coding sequence (CDS)

ATGATGGCAATTTTTCCAAGAAAAAGGGAAGTTCTACTTATGGACAATAAGTTTAATACAATGAAATTGACATTATGGGACGATTTAGCTGAAAATGAAGGACAATATCTGGAGGAAAATGGGCAAGCACAAAGTGTTATTGTAATCACCAATGTAAAGCCTACTGAATTTGATGGTGAGATAGCCATATCATCTACGATCATTAGCGTTATTGACATAAATCCTCCCCTTGAGAGAGCAGAACCATTGAAGTGTAGGATGCAAACTCTTATAAAAGACCAAAAGTTGAATGATATTTTATATCCATCCAAAAAGATGATAGAAGCAAAAGAGGTCAACATGGATGACATTATCAAAGGAAAAGTAAGTGACCTATATTGTTCTTTCATTGGAAGAATAATAAAGATACACAACAAAGATAATCCATGGTTTGAAAAATGCAATTCATGCAATGAAAGATTATTTCCTATAGACTACATGCCAACTGCATATTGTACAAAATGTGAGAATGAAAATTCTACATTTACAAGAAAATATGTGTTGAGAATGCTTGTATCTGATGGTGAAGAGGAAAGCTACATAACTCTTTTTTATGCTGCTGATTACATAGTTGGATGCAATGCAACCGAATATTACAATGATCTCAAGGTATATGTTAAAATTTAA

Protein sequence

MMAIFPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISSTIISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKVSDLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEYYNDLKVYVKI

Homology

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BLAST of Lcy11g010090 vs. ExPASy Swiss-Prot
Match: Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-13
Identity = 55/216 (25.46%), Postives = 110/216 (50.93%), Query Frame = 0


Query: 8   KREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISSTI 67
           KR++++ D+   T+ ++LW+DLA   GQ L +   +  +I I ++K ++F G +++S+  
Sbjct: 347 KRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQG-LSLSTVG 406

Query: 68  ISVIDINPPLERAEPLKCRMQTLIKDQKLNDI--LYPSKKMIEAKEVNMDDII------- 127
            S I +NP L  AE L+    +  K   +  I     + ++  A+ +  D +        
Sbjct: 407 RSTIVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSD 466

Query: 128 --KGKVSDLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAY-CTKCENENSTF 187
              G+   ++ S    I  I      W+  C +CN+++   + + + Y C  C+  ++  
Sbjct: 467 PNLGQDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKV--TEAIGSGYWCEGCQKNDAEC 526

Query: 188 TRKYVLRMLVSDGEEESYITLFY-AADYIVGCNATE 211
           + +Y++ + VSD   E++++LF   A+ IVGC+A E
Sbjct: 527 SLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADE 559

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BLAST of Lcy11g010090 vs. ExPASy Swiss-Prot
Match: Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-12
Identity = 58/223 (26.01%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 8   KREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISSTI 67
           KR++ L D    T+ ++LW+DLA   GQ L +      VI I ++K  +F G +++S+  
Sbjct: 343 KRDITLADESRKTVVVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQG-VSLSTIS 402

Query: 68  ISVIDINPPLERAEPLKCRMQTLIKDQKLNDI---LYPSKKMIEAKEVNMDDIIKGKVSD 127
            S + INP    A+ LK    +  K+  ++ I   + PS K   ++ +  D ++   ++ 
Sbjct: 403 RSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSAKN-GSRSLYTDRVLLSHITS 462

Query: 128 ---------LYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAY-CTKCENENST 187
                    ++ S    I  I      W++ C +CN+++   + + + Y C  C+ +   
Sbjct: 463 NPSLFEEKPVFFSTRAYISFIKPDQTMWYQACKTCNKKV--TEALDSGYWCEGCQRKYEE 522

Query: 188 FTRKYVLRMLVSDGEEESYITLFY-AADYIVGCNATEYYNDLK 217
            + +Y++ + V+D   E++I+ F   A+ I+GC+A E  N LK
Sbjct: 523 CSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADE-LNKLK 560

[Close]

BLAST of Lcy11g010090 vs. ExPASy Swiss-Prot
Match: Q9SD82 (Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA1B PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 58/222 (26.13%), Postives = 104/222 (46.85%), Query Frame = 0


Query: 8   KREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISSTI 67
           KR++ L D    T+ ++LW+DLA   GQ L +      VI I ++K   F G +++S+  
Sbjct: 319 KRDITLADETKKTVVVSLWNDLATGIGQELLDMADNHPVIAIKSLKVGAFQG-VSLSTIS 378

Query: 68  ISVIDINPPLERAEPLKCRMQTLIKDQKLNDI-------LYPSKKMIEAKEVNMDDIIK- 127
            S + INP    A  LK       K+  ++ I            + + +  V +  I   
Sbjct: 379 RSNVVINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSN 438

Query: 128 ---GKVSDLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAY-CTKCENENSTF 187
              G+   ++ S    I  I      W+  C +CN+++   + M + Y C  C+ ++   
Sbjct: 439 PSLGEEKPVFFSTRAYISFIKPDQTMWYRACKTCNKKV--TEAMDSGYWCESCQKKDQEC 498

Query: 188 TRKYVLRMLVSDGEEESYITLFY-AADYIVGCNATEYYNDLK 217
           + +Y++ + VSD   E++++ F   A+ I+GC A +  NDLK
Sbjct: 499 SLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADD-LNDLK 536

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BLAST of Lcy11g010090 vs. ExPASy TrEMBL
Match: A0A6J1DNS8 (replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia OX=3673 GN=LOC111022373 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 7.7e-41
Identity = 84/118 (71.19%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 5   FPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAIS 64
           + +KREVLLMDNK NT+KLTLWDDLAENEGQYLEENG+ Q+VI+ITNV+P +F+GE++IS
Sbjct: 155 YSKKREVLLMDNKLNTIKLTLWDDLAENEGQYLEENGKTQTVILITNVRPNQFEGEVSIS 214

Query: 65  STIISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV 123
           S+ ISV+ INP L   E LKCRM TL +D+KL D+LYPSKK++EAKEV+MDD+IKGKV
Sbjct: 215 SSNISVVAINPLLNETETLKCRMHTLTEDKKLRDLLYPSKKLMEAKEVSMDDVIKGKV 272

[Close]

BLAST of Lcy11g010090 vs. ExPASy TrEMBL
Match: A0A314L4L3 (Replication protein a 70 kDa dna-binding subunit b OS=Nicotiana attenuata OX=49451 GN=RPA1B_0 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-27
Identity = 72/208 (34.62%), Postives = 119/208 (57.21%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           ++REV++M+ +++   LTLW DLAE EG+ LE    ++ V+   + K + F G+  +S+T
Sbjct: 50  KRREVIVMNERYDRKTLTLWGDLAEIEGELLESIENSKPVVAFCDAKSSTFQGDFVLSTT 109

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV---S 126
            +S + I P  E+A+ L  +    +K  K++  L PS+ M  A+EV + DII G +    
Sbjct: 110 PVSSVLIYPTFEKAKNLN-KWNDNMKASKIDISLMPSRLMQIAREVKITDIIDGSIVNLK 169

Query: 127 DLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRM 186
           D+YC F  +I  I++  +PW+  C  C++R+  I+   +A C  C+ E+  +  +Y L+ 
Sbjct: 170 DIYCKFKAKITDINSNHDPWYHACKKCHKRVTVIN--SSATCGYCKIEDIDYDERYRLKF 229

Query: 187 LVSDGEEESYITLFYAADYIVGCNATEY 212
            VS  E+   ITLF  A Y  GC+  EY
Sbjct: 230 DVSAEEQYISITLFDGARYFFGCDVKEY 254

[Close]

BLAST of Lcy11g010090 vs. ExPASy TrEMBL
Match: A0A1S4BAI4 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107806315 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.5e-25
Identity = 68/212 (32.08%), Postives = 118/212 (55.66%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           ++RE++L++   +   +TLW+D +E +GQ L++    + V+   +V+ T + G  +IS+T
Sbjct: 164 KRREIVLINEMVDRKTVTLWNDFSEIDGQVLQKLIDEKPVVAACDVRKTSYRGNFSISTT 223

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV---S 126
            +S I INP  E+A  L+ +     K + ++  L PS ++  A+EV ++DI         
Sbjct: 224 YVSSIMINPKFEKAVALQ-KWHDYKKAKNIDISLLPSIQLKNAREVKIEDIKDDSFDNKE 283

Query: 127 DLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRM 186
           D Y  F  RI  I NKD PW+  C  C +++  I+ +  A C  C  EN  +  +Y+L++
Sbjct: 284 DTYFKFNARIKDIMNKDEPWYSSCKKCYKKVDVINNI--AKCHHCGVENVDYQERYILKL 343

Query: 187 LVSDGEEESYITLFYAADYIVGCNATEYYNDL 216
            V D +E  Y+TLF +  Y++GC+ T Y   +
Sbjct: 344 EVFDKKERCYVTLFESTRYLLGCDVTTYIQSI 372

[Close]

BLAST of Lcy11g010090 vs. ExPASy TrEMBL
Match: A0A1S4BRY1 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107811252 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 65/213 (30.52%), Postives = 114/213 (53.52%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           ++RE+ LM+ +++   +TLW ++AE +G  L+     +S++ + ++K T + G   IS+T
Sbjct: 113 KRREITLMNERYDRQTITLWGEIAEKDGDMLQNMMFEKSIVALCDIKGTTYRGNFVISTT 172

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKG----KV 126
            +S + INP  E+A  L+      +K Q     L P + + +A  V + DI         
Sbjct: 173 HVSSVMINPAFEKAIALR-NWHNRMKSQDKKITLMPCRLIKKAGNVKIGDITHADSFDNT 232

Query: 127 SDLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLR 186
            D+Y  F  +I  I NKD+PW+  C  C +++  +D + T  C +C   N  +  +Y+L+
Sbjct: 233 KDIYSKFNAKIKDIINKDDPWYLSCKKCYKKVSFVDNIAT--CPRC-GSNVEYEERYLLK 292

Query: 187 MLVSDGEEESYITLFYAADYIVGCNATEYYNDL 216
           + + D +E  YITLF A  Y+ GC+ T Y   +
Sbjct: 293 LELFDEKEHCYITLFEATKYLFGCDVTTYVRSI 321

[Close]

BLAST of Lcy11g010090 vs. ExPASy TrEMBL
Match: A0A1J6KWZ0 (Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_29609 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 71/218 (32.57%), Postives = 119/218 (54.59%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           ++RE+ LM+ + +   +TLW ++AE +G  L+     + ++V+ NVK T + G   IS+T
Sbjct: 125 KRREIALMNERCDRQTVTLWGEIAEKDGDMLQNMIFEKPIVVLCNVKGTTYRGNFVISTT 184

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKG----KV 126
            +S + INP  E+A  L+      +K Q  +  L PS+ +  A++V + DI         
Sbjct: 185 HVSSVMINPSFEKAIALQ-NWHNRMKLQDKDITLMPSRLIKNARKVKIGDITHADSFDNT 244

Query: 127 SDLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLR 186
            D Y  F  +I  I NKD+PW+  CN C +++  +D + T  C +C   N  +  +Y+L+
Sbjct: 245 KDTYRKFNTKIKYIINKDDPWYLSCNKCYKKVSLVDNIAT--CPRC-GSNVEYEERYLLK 304

Query: 187 MLVSDGEEESYITLFYAADYIVGCNATEYYNDLKVYVK 221
           + + D +E  YITLF A  Y++GC       D+K YV+
Sbjct: 305 LELFDEKEHCYITLFEATKYLLGC-------DVKTYVR 331

[Close]

BLAST of Lcy11g010090 vs. NCBI nr
Match: XP_022155232.1 (replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-40
Identity = 84/118 (71.19%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 5   FPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAIS 64
           + +KREVLLMDNK NT+KLTLWDDLAENEGQYLEENG+ Q+VI+ITNV+P +F+GE++IS
Sbjct: 155 YSKKREVLLMDNKLNTIKLTLWDDLAENEGQYLEENGKTQTVILITNVRPNQFEGEVSIS 214

Query: 65  STIISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV 123
           S+ ISV+ INP L   E LKCRM TL +D+KL D+LYPSKK++EAKEV+MDD+IKGKV
Sbjct: 215 SSNISVVAINPLLNETETLKCRMHTLTEDKKLRDLLYPSKKLMEAKEVSMDDVIKGKV 272

[Close]

BLAST of Lcy11g010090 vs. NCBI nr
Match: OIT36661.1 (replication protein a 70 kda dna-binding subunit b [Nicotiana attenuata])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-26
Identity = 72/208 (34.62%), Postives = 119/208 (57.21%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           ++REV++M+ +++   LTLW DLAE EG+ LE    ++ V+   + K + F G+  +S+T
Sbjct: 50  KRREVIVMNERYDRKTLTLWGDLAEIEGELLESIENSKPVVAFCDAKSSTFQGDFVLSTT 109

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV---S 126
            +S + I P  E+A+ L  +    +K  K++  L PS+ M  A+EV + DII G +    
Sbjct: 110 PVSSVLIYPTFEKAKNLN-KWNDNMKASKIDISLMPSRLMQIAREVKITDIIDGSIVNLK 169

Query: 127 DLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRM 186
           D+YC F  +I  I++  +PW+  C  C++R+  I+   +A C  C+ E+  +  +Y L+ 
Sbjct: 170 DIYCKFKAKITDINSNHDPWYHACKKCHKRVTVIN--SSATCGYCKIEDIDYDERYRLKF 229

Query: 187 LVSDGEEESYITLFYAADYIVGCNATEY 212
            VS  E+   ITLF  A Y  GC+  EY
Sbjct: 230 DVSAEEQYISITLFDGARYFFGCDVKEY 254

[Close]

BLAST of Lcy11g010090 vs. NCBI nr
Match: KAG5563556.1 (hypothetical protein RHGRI_006105 [Rhododendron griersonianum])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-25
Identity = 64/208 (30.77%), Postives = 118/208 (56.73%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           +KR V L+++   ++ LTLW D+A NEG  LE+    + ++ ++ VK + + G +++S+ 
Sbjct: 210 KKRSVTLINSSCESILLTLWGDMATNEGDMLEKMKTKRPIVALSKVKISTYAGVLSMSTI 269

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV---S 126
            I+ + ++P +   + +K R    +  QK+       K    A+ V + D+++  +    
Sbjct: 270 SITTLQVDPSIPETDAVKKRFNHNL--QKMPGTTSSGKNKETAERVKISDVMERSLLEFQ 329

Query: 127 DLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRM 186
           + YCSF   II+I N + PW+  C  CN+++ P +      CTKC ++NS    +Y++++
Sbjct: 330 NTYCSFKATIIRIDNMEQPWYNACKVCNKKVIPGE--QGMECTKCADKNSEHHPRYLMKI 389

Query: 187 LVSDGEEESYITLFYAADYIVGCNATEY 212
            V DGE + YITLF AA+ I GC+  ++
Sbjct: 390 TVGDGERQLYITLFEAAEKITGCSVVDF 413

[Close]

BLAST of Lcy11g010090 vs. NCBI nr
Match: KAG5563555.1 (hypothetical protein RHGRI_006105 [Rhododendron griersonianum])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-25
Identity = 64/208 (30.77%), Postives = 118/208 (56.73%), Query Frame = 0


Query: 7    RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
            +KR V L+++   ++ LTLW D+A NEG  LE+    + ++ ++ VK + + G +++S+ 
Sbjct: 1651 KKRSVTLINSSCESILLTLWGDMATNEGDMLEKMKTKRPIVALSKVKISTYAGVLSMSTI 1710

Query: 67   IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV---S 126
             I+ + ++P +   + +K R    +  QK+       K    A+ V + D+++  +    
Sbjct: 1711 SITTLQVDPSIPETDAVKKRFNHNL--QKMPGTTSSGKNKETAERVKISDVMERSLLEFQ 1770

Query: 127  DLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRM 186
            + YCSF   II+I N + PW+  C  CN+++ P +      CTKC ++NS    +Y++++
Sbjct: 1771 NTYCSFKATIIRIDNMEQPWYNACKVCNKKVIPGE--QGMECTKCADKNSEHHPRYLMKI 1830

Query: 187  LVSDGEEESYITLFYAADYIVGCNATEY 212
             V DGE + YITLF AA+ I GC+  ++
Sbjct: 1831 TVGDGERQLYITLFEAAEKITGCSVVDF 1854

[Close]

BLAST of Lcy11g010090 vs. NCBI nr
Match: KAG5560633.1 (hypothetical protein RHGRI_003829 [Rhododendron griersonianum])

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-25
Identity = 64/208 (30.77%), Postives = 117/208 (56.25%), Query Frame = 0


Query: 7   RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISST 66
           +KR V L+++   ++ LTLW D+A NEG  LE+    + ++ ++ VK + + G +++S+ 
Sbjct: 337 KKRRVTLINSSCESILLTLWGDMATNEGDMLEKMKTKRPIVALSKVKISTYAGVLSMSTI 396

Query: 67  IISVIDINPPLERAEPLKCRMQTLIKDQKLNDILYPSKKMIEAKEVNMDDIIKGKV---S 126
            I+ + ++P +   + +K R    +  QK        K    A+ V + D+++  +    
Sbjct: 397 SITTLQVDPSIPETDAVKKRFNHNL--QKTPGTTSSGKNKETAERVKISDVMERSLLEFQ 456

Query: 127 DLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAYCTKCENENSTFTRKYVLRM 186
           + YCSF   II+I N + PW+  C  CN+++ P +      CTKC ++NS    +Y++++
Sbjct: 457 NTYCSFKATIIRIDNMEQPWYNACKVCNKKVIPGE--QGMECTKCADKNSEHHPRYLMKI 516

Query: 187 LVSDGEEESYITLFYAADYIVGCNATEY 212
            V DGE + YITLF AA+ I GC+  ++
Sbjct: 517 TVGDGERQLYITLFEAAEKITGCSVVDF 540

[Close]

BLAST of Lcy11g010090 vs. TAIR 10
Match: AT5G61000.1 (Replication factor-A protein 1-related )

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-13
Identity = 58/223 (26.01%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 8   KREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISSTI 67
           KR++ L D    T+ ++LW+DLA   GQ L +      VI I ++K  +F G +++S+  
Sbjct: 343 KRDITLADESRKTVVVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQG-VSLSTIS 402

Query: 68  ISVIDINPPLERAEPLKCRMQTLIKDQKLNDI---LYPSKKMIEAKEVNMDDIIKGKVSD 127
            S + INP    A+ LK    +  K+  ++ I   + PS K   ++ +  D ++   ++ 
Sbjct: 403 RSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSAKN-GSRSLYTDRVLLSHITS 462

Query: 128 ---------LYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAY-CTKCENENST 187
                    ++ S    I  I      W++ C +CN+++   + + + Y C  C+ +   
Sbjct: 463 NPSLFEEKPVFFSTRAYISFIKPDQTMWYQACKTCNKKV--TEALDSGYWCEGCQRKYEE 522

Query: 188 FTRKYVLRMLVSDGEEESYITLFY-AADYIVGCNATEYYNDLK 217
            + +Y++ + V+D   E++I+ F   A+ I+GC+A E  N LK
Sbjct: 523 CSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADE-LNKLK 560

[Close]

BLAST of Lcy11g010090 vs. TAIR 10
Match: AT5G08020.1 (RPA70-kDa subunit B )

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-13
Identity = 58/222 (26.13%), Postives = 104/222 (46.85%), Query Frame = 0


Query: 8   KREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVIVITNVKPTEFDGEIAISSTI 67
           KR++ L D    T+ ++LW+DLA   GQ L +      VI I ++K   F G +++S+  
Sbjct: 319 KRDITLADETKKTVVVSLWNDLATGIGQELLDMADNHPVIAIKSLKVGAFQG-VSLSTIS 378

Query: 68  ISVIDINPPLERAEPLKCRMQTLIKDQKLNDI-------LYPSKKMIEAKEVNMDDIIK- 127
            S + INP    A  LK       K+  ++ I            + + +  V +  I   
Sbjct: 379 RSNVVINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSN 438

Query: 128 ---GKVSDLYCSFIGRIIKIHNKDNPWFEKCNSCNERLFPIDYMPTAY-CTKCENENSTF 187
              G+   ++ S    I  I      W+  C +CN+++   + M + Y C  C+ ++   
Sbjct: 439 PSLGEEKPVFFSTRAYISFIKPDQTMWYRACKTCNKKV--TEAMDSGYWCESCQKKDQEC 498

Query: 188 TRKYVLRMLVSDGEEESYITLFY-AADYIVGCNATEYYNDLK 217
           + +Y++ + VSD   E++++ F   A+ I+GC A +  NDLK
Sbjct: 499 SLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADD-LNDLK 536

The following BLAST results are available for this feature:

BLAST of Lcy11g010090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10Q08	5.0e-13	25.46	Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japoni...	[more]
Q9FME0	5.5e-12	26.01	Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=37...	[more]
Q9SD82	1.2e-11	26.13	Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Lcy11g010090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNS8	7.7e-41	71.19	replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia O...	[more]
A0A314L4L3	8.2e-27	34.62	Replication protein a 70 kDa dna-binding subunit b OS=Nicotiana attenuata OX=494...	[more]
A0A1S4BAI4	4.5e-25	32.08	replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=...	[more]
A0A1S4BRY1	2.9e-24	30.52	replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=...	[more]
A0A1J6KWZ0	5.0e-24	32.57	Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_2...	[more]

BLAST of Lcy11g010090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155232.1	1.6e-40	71.19	replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]	[more]
OIT36661.1	1.7e-26	34.62	replication protein a 70 kda dna-binding subunit b [Nicotiana attenuata]	[more]
KAG5563556.1	1.1e-25	30.77	hypothetical protein RHGRI_006105 [Rhododendron griersonianum]	[more]
KAG5563555.1	1.1e-25	30.77	hypothetical protein RHGRI_006105 [Rhododendron griersonianum]	[more]
KAG5560633.1	2.5e-25	30.77	hypothetical protein RHGRI_003829 [Rhododendron griersonianum]	[more]

BLAST of Lcy11g010090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61000.1	3.9e-13	26.01	Replication factor-A protein 1-related	[more]
AT5G08020.1	8.7e-13	26.13	RPA70-kDa subunit B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 96..218 e-value: 6.8E-13 score: 50.3
None	No IPR available	GENE3D	2.40.50.140		coord: 6..95 e-value: 1.4E-13 score: 52.8
None	No IPR available	PANTHER	PTHR23273:SF46	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE	coord: 8..213
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 8..213
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 127..212 e-value: 7.8E-10 score: 38.7
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 120..213
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g010090.1	Lcy11g010090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003677	DNA binding