Lcy11g009500 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g009500
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	18S rRNA aminocarboxypropyltransferase
Location	Chr11: 10351254 .. 10357112 (-)
RNA-Seq Expression	Lcy11g009500
Synteny	Lcy11g009500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCAAGTTATTGTGGTATGGTGTAAATATGAGATTTTTATTCTTTAGCATTTGTATCATTTAAATAAGATTTTTAATTTAATTATATTCAAGACTCAATTTATATATCTAAATTTTGATGACGTAGAACTCAAAAAAATAAAATAAAATAATTGATCGTGTATATCAATGTTTACTTTAAAAATTCAGTTTTATCTAATTGAACCATATATTTTGATAAGTTGATACATTTTTTTCCTTAAACTTTAATCCATTTTACTAATTTTACTTTTTAATAGACTTTCATTTAAAAAGTCATTAAGCAAATGTTATTAGAGTTATAAAACATATGTATGTAAAAAAAAAAAAAAACAAAGTTGTATTTTTGTTTGTTTTTTTTTTTTTTTTACATAAAATATAAAACAAATAATTACAAAGATTCAGAATAAATGGGCAGAATGTCCGCTTGAGATAAATCTCGAGCTAAAACGTTGTCAGCATGAGGACAATCTTCTAACCATACTTTAGAGTGGATCAATGGTCTATATTAGGAAAAAAATTTCAATACACATTAATTTTCAATATTTCTGAATTTTTAAGTTTGTATTTAATGGGTTCCTAAATTAACCCATTCGGCATTTTAAAATTTCATAGAACTATTGGACATAAAATTGAAAGTTTAGAATTTTACTAGACACAAAATTCAATTTTATGTTTAATACATTTGTTAATTTTTAAAAATGTTAAGGCTCCATTTGATGACCATTTGATTTTTGGTTTTTGAAAATTAAGTTTGTTTTCTCTTGATATCACTACCATAGTTTTCATCATTGTCAATGACGCATTTGAATTCCTACTCAAATTCCAAACCCCAAAACAAGTTTTTGGAAACTACTTTTTAAAAAAAAAAATTAAAACTTGACTTGATTTTTGAAAATATATGGAAAATGTATATAACAAAACCAAAAAACTCATAAGTGGAAGTAATGTTTTCAAGCTTAATTTTCAAAAACAAAAAATCAAAAGACAATAAATTCATAAATTTTCATTTTTGTGTCTAGTAGGTTATCATTGATATGTTCGACATTTATTAAAATTTATGGATTCACTAGACACAAAATTAAAAGCTTAAGAGTTATGACAAACATAAAATTCAATTTTATAATTAATATACCAAGGGTCCATTTGTAATACATTTTAATTTAAATGTTTTTCAATCATGTATTTTTTAAAAAACATTTTGTATAAAAATGTTTAGAATTTAAACACACATATATTTGGTTGCATTCCCCTATTAGTGTTTTTATACACAAGTTATTGTATACTTAAAAAGTCTTTTTTAAAAAGTTGGTTTCAAGTGTTTCTCGAAAAATAGTTTATTTATCAATCTCATTTTATAATAAGTCATTTTTAATGGTTGCCAAACACTATAATTTTTTCAAAATGTTTTTTTTTTCCAAAATTAAACACTTGACAAGTTAAACCAAACACACCTTAAGTCAACTTTTAAATAATTTGAATACATCATAGATCTATTATACACAAAATTGAGAGTTAGAGGACTATTTGGATATTTTAAATCTTAGGAACATATTAGACACAATATTTAAAATAAAAAGGACTAATTAGACACCCTATAGAATTCATGACCTATTGAATAGGTTAATGACATATTGAAACAAATTGAAAGATTGGGTTCGTTTGATAACCATTTCGTTTTTTACTTTCGAAAATTATGTTTATTTTCTCCCAATTTTCTTACCATGATTTTCATGTTTATTAAAGATACAAAATTCCAAAAAAAAAAAAAAACAAAAACAAAAACAAAACAAAATTTGAAAACTATTTTTTTCATTTTTAAATTTTGACTTCATTCTTGAAAATAGGAGGAGAAGGTAAATGACAAATTAATTTATAGGTGGTATAAGTGTTTACAGACTTAGTTTTTAAAAATAAAAAAACAAAACCAAATGTTATCAATCAAATGTGTCAATTACAACTATGATCGCTTTGACAACAAATTTGAAATTTATGGTAGGACTAAAGTTGTAATTAAACCAAATTAAACGTAGTAAAAAAAAATAAACCAAATTAAACCTTATTCTAATCTGCAGACCATAACCTTCGTCCTATTGGAAAAAGCATCCGCCGACCCTTCCTCGCCGTCGTGTACTAATTCCGCCACCTGGAGACGGTGCTCTACTAAATCATCGAGGCCATTTTCGAGAAGGAAAGGAGAGGGAAAACAATAAGAAAACAAGCAACGAATCCGCGGAGAAAAGAACCCAGAAGCCCCGAATTCCACTTCACTAGTCTGCTTCAGAATGAGCCATAACAAGCCTAGACGCTTCAAAAATCATCATCCCCGTCGCGGACAATCCACTCGAGGCCATAAATTCGTCGCGTAATTACATTTACAGTTACCCTTTTCCCCCGATTCGTCTTTTCGTCGATTGCTCATTTGCTTTCTTTTTGTGTTTTTTGGGTTTCTCAGAGAGGACGAGTGTTTGCCAGTCGACCCAGGTGCCTACTTTGTTTCACCGAAGCTTCATAGATTTAGTTACTGTTAATAGAAGCCATCACGGTAAAGGGGTTTTGGATATAGGTCCTTTATGAGTTCCTTTCTCTTGCAGCCAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGTGTGTGTTATTCAACTTGTTTTTGACCTTTTTGTTGCTGAATTCTCAACAATTCCATCCTTAAACTTGTTACTGCCCTGCTGCTGTTACAAATGGGAATGAAAACTTAAGCTTAAAAAACTGCATGCTATATGAAATTGATGGTGTTTTATTGTTGATATAGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGAAAGAAAGTACCTTATTCTCTCCTTTTCTTTTATTTTCATATTTTTAACTATGTTGCTCATTAGTACATTAATTGGTTCATGTTGGCATATCACCGAGCCATTTTAGTTCTACCACAAGAATTAGTTGATTTTGTATGTGTTATCCCCTCTCCACTTCATTAATGATCAAACAAAATGTCTTGTTGGATGTATTGGCTTAATTCTACTTGGTCTTGGCGGCAAGAAAATCTGAAGATAAGCTTCAAATGTGATAATTGGTATCCATACGAATATGATGAAGTCTAGAAAAATAGGCTGCATTTTGTTTACACGCTGAAGGAAGTCTAATGTTAGATGGTTCTGTTTCGTAGGTGTGGAACATGTCCTATACGAGGAACTTTCCAGATATAAATACAAATTAGAAGAGAAGCAAATCTAAAGTTTCTGATTGTAGACTGACAAATCAGGTTTAAATCATAAAAGTTGCAAAACCAAGAACCAAATAGAACTAGTGAAAATTAAGGAACAACAAGTTTAATTTGCTTTAATTATTTTTAAGTTGCCTCATCAAATGAGGGTGGATGGTTTAAATTTGATGTGAATCATCTGATTCATGCTCGTTTAATATTCGAATTAAAAGCACGCATCTTCTATCAAATACAATTAATTGAGTTCTTTTAACATATAAACAAATGATCTAGCTTCCGTTGTGTTCATGCAGGATTTGCGTGTTAACAGTGGATTTGGAGGCATTGTTTTAAGGTATGGTGAACAATTATGTTTCTTAGTGTACTAACTGTAAGTTTGTAACTGAACATAGGTTTATGATAATAATATCACTTGAAAGTTGTGTCATCTCATCTCTAGTTTTAGATATACATAAACAGCTTTCAAGAGTGTCAAGGAAATTTGAACTTGTTTCCTGACTTGATGGAGGTACTATTCAACATTATTGGGAATCCTTTACCTTTGACATTTGGTGTTAATTTCAAGAAATTTGTTTGTTTTCAATTGTTTTTGGATGATATGCTTCTGTAAGTGAGGATCCACTTGTTTCGATTGAGGGAGTTGCTGCCAATCCTCTAAATGGTTGCGATGGAATGGAATAATGGCCGGTTTCAAAGCATATGATGGAGTTGAGAGGTTTCCTTAATTTTACTGGATATTACAGAAATTTTGTTGCCAATTATGGTGCATTGCTTTCCTTTTTATCCACTCAAGAAAGACAATTTCCACAGGAAAACAGCTTTTTTGTTGCACAACTGTAAGTTGCTTGTGATACATTCCTATGTTTAGATTGCCACATTTTTCTCAACCTTGTTATCATAGAGATAGTTGCTTCTGAGACCAGGGTGGAAGAGTGGGTATTTTCAGTTAGGAGTTGATGTTCATCGTTTCAAAGATGCATTAGTGATGACCATACCCAGATGGAAATTTGTGGTCCTTAAAGTCTTGTTAGATAATAGATACTAAGATGGTGGCTGGACAGTTGAAGACATCATAAACGGATCACTAAGCTCATATGGTATTATTTTGATATTTATTATAAACCTGGCTGGAAATAAGGTTGCCAGTGCACTGTCTTGTATGCCCTTGCATAAGGCGTTAAACCATCCTTCAAGGTTCCCCCACCACCATCCACCCACTCACACACAAAATGGGAAAAATGGGTGCATGATGGTATGGAGATCTTTCGTGTTTCAAAGAAAAGTTAGTCTTGCCATCTAATTCGCCTACCATTCCTTCATCGCAATAGGAGTTCCATGCCTCACTTATGGCTGGCTGGCTGGCCAGGGGTATCCTCAAGACCTATCATAGATTAGCCAAGGAAGTGGCCTGGCTAGAGTTAAGCTATTTGTTAGTGTATGTGTGGTCTATGAACAAGCTAAGTACCTTTGTGCAGGTGGCTTGGGGAGGACCAGTCCTTCATCACTTGCTGTTGGGTTGCCATTTTGTGCAATTGATCTGGAGTAGGTGGTTGAGCTTGTTTGGTTTACATTTGGTGTGGAGGAGAGATTGATACTCTATGATTGAGGAGGTGCTCTGGAGTTTGCCTTAGAGTGCTGCGACAAGCTATTTCTTTTGTTGTTGATCGGGGTATCTGGCTTGAGAGAAATAACAATTTTTTAGAGAGGTGGAGAAATCACGTGAGGAGGTCTAGGAGGGGGCTAGGTTTAATGCCTCCTTGTGGGTGTCTAATTATCATATTGGTTTGGTTTTATTGGATTGGAGGCTTTTTCTATACTTAGTTTTTGGGCTCCCTCTCGCTTTCTTGGTTTTTGTTGGGCTTTTTTTGTATGCCCTTGTTTTTATTTCATTTTTCCTAATGAAAGTTTGGTTTCTTAAAAAAAAAAAACTCGAACAAGCTACGTACGTTGCTTTAGCCCTTGTTATTCTTTTTCCAACCTTTGCTCATTTCAAAATGTATTTTGGGGGACTTGTATTTATTAATTTAATGAAGAAATCAACTTTCATTAAGATGTAGTGTGGGTCCCACCTATAACCAAGTGATGTAACTAATTTTCGGGTGGGAAAGATTCAAGCTAAGGTCGTATTTAGTAAGGATATTACATGTATGAGATATTTTCTTTGGATTAAGAGTTTTGGCGTTTGAGGAGCGGTCTTGAGTCATCTCAAAACTATGTACCTCTCTATTGTTAATTTAATTGTGAATCGATCATCTTGCTAATTATCTACTATAACCTGCGTTCACAATTTTATTGATGGCCTGATGAAACAAGATGGATGGTAATGATTAAATTCTTATACAAAGGCTTATGAACTTTTGGTCCGTATCTTTATCCTCTTCAATCTGAAAATTTTGACAGCCCAGTGGGAGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTGGCAGTTGTGGATTGCTCATGGGCGCGTCTGGGCGATGTTCCATTTGTGAAGTTGCGTTGCTCTGCTCCTCGCCTATGTAAGATATTTGCTTCTGGAATATGA

mRNA sequence

ATGGGCCAAGTTATTGTGACCATAACCTTCGTCCTATTGGAAAAAGCATCCGCCGACCCTTCCTCGCCGTCGTGTACTAATTCCGCCACCTGGAGACGAGAGGACGAGTGTTTGCCAGTCGACCCAGCCAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGAAAGAAACTTCCGTTGTGTTCATGCAGGATTTGCGTGTTAACAGTGGATTTGGAGGCATTGTTTTAAGCCCAGTGGGAGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTGGCAGTTGTGGATTGCTCATGGGCGCGTCTGGGCGATGTTCCATTTGTGAAGTTGCGTTGCTCTGCTCCTCGCCTATGTAAGATATTTGCTTCTGGAATATGA

Coding sequence (CDS)

ATGGGCCAAGTTATTGTGACCATAACCTTCGTCCTATTGGAAAAAGCATCCGCCGACCCTTCCTCGCCGTCGTGTACTAATTCCGCCACCTGGAGACGAGAGGACGAGTGTTTGCCAGTCGACCCAGCCAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGAAAGAAACTTCCGTTGTGTTCATGCAGGATTTGCGTGTTAACAGTGGATTTGGAGGCATTGTTTTAAGCCCAGTGGGAGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTGGCAGTTGTGGATTGCTCATGGGCGCGTCTGGGCGATGTTCCATTTGTGAAGTTGCGTTGCTCTGCTCCTCGCCTATGTAAGATATTTGCTTCTGGAATATGA

Protein sequence

MGQVIVTITFVLLEKASADPSSPSCTNSATWRREDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLCKIFASGI

Homology

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BLAST of Lcy11g009500 vs. ExPASy Swiss-Prot
Match: Q5HZH2 (18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 40  VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVNS 99
           V P   E+Q GP        LAMW+ G CD KRCTGRKLAR GL++         LR++ 
Sbjct: 40  VQPEEAEDQGGPGPAALPCALAMWELGHCDPKRCTGRKLARLGLVR--------CLRLSQ 99

Query: 100 GFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
            FGG+VLSPVG   VS  D  L+ Q G+AV+DCSWA+L D PF K+R S  RL
Sbjct: 100 RFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRL 144

[Close]

BLAST of Lcy11g009500 vs. ExPASy Swiss-Prot
Match: Q9UJK0 (18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.2e-22
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 40  VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVNS 99
           V+P   + + GP        LAMW+ G CD +RCTGRKLAR GL++         LR+  
Sbjct: 40  VEPGAADGEGGPGPAALPCTLAMWELGHCDPRRCTGRKLARLGLVR--------CLRLGH 99

Query: 100 GFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
            FGG+VLSPVG    S  D  L+ Q G+AV+DCSWARL + PF K+R S  RL
Sbjct: 100 RFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRL 144

[Close]

BLAST of Lcy11g009500 vs. ExPASy Swiss-Prot
Match: Q12094 (18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.3e-19
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 44  NEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVNSGFGGIVLSP 103
           N E+   P ++LAMWDF  CD KRC+G+KL R GL+K         LRV   F GIV+SP
Sbjct: 38  NSEKMKFP-VKLAMWDFDHCDPKRCSGKKLERLGLIK--------SLRVGQKFQGIVVSP 97

Query: 104 VGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
            G   V  +D  +++Q G +VV+CSWARL +VPF K+     RL
Sbjct: 98  NGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGGKHERL 132

[Close]

BLAST of Lcy11g009500 vs. ExPASy Swiss-Prot
Match: Q10409 (18S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tsr3 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 53  IQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVNSGFGGIVLSPVGVNCVSKE 112
           + LAMWDFG C+   C+G++L R G ++        +LR+   F G+V++P G   VS  
Sbjct: 27  LPLAMWDFGHCNPNACSGKRLERLGCVR--------NLRIGQKFRGVVITPNGKVPVSPA 86

Query: 113 DHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           D       G +VV+CSWAR+ ++PF ++     RL
Sbjct: 87  DKEYFDNGGASVVECSWARIEEIPFSRIGGRCERL 113

[Close]

BLAST of Lcy11g009500 vs. ExPASy Swiss-Prot
Match: O26654 (16S rRNA aminocarboxypropyltransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_554 PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 25/80 (31.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 53  IQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVNSGFGGIVLSPVGVNCVSKE 112
           +++ ++   +CD K+CT  KL R G  K  S +           G +VL+P     VS E
Sbjct: 1   MKIVVYHAEECDRKKCTSLKLGRKGKFKIVSSLNQLPR------GALVLNPFSEKAVSPE 60

Query: 113 DHSLLKQKGLAVVDCSWARL 133
           D  ++ ++G+A +DCSW ++
Sbjct: 61  DRDMVLRRGIAALDCSWKKV 74

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BLAST of Lcy11g009500 vs. ExPASy TrEMBL
Match: A0A6J1C5M7 (18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC111008482 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.8e-51
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           ED+CLP+DPANEEE AGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRV+
Sbjct: 28  EDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVS 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKED SLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 133

[Close]

BLAST of Lcy11g009500 vs. ExPASy TrEMBL
Match: A0A6J1J6L0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.3e-50
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. ExPASy TrEMBL
Match: A0A6J1J3E9 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.3e-50
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. ExPASy TrEMBL
Match: A0A6J1ETU0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435889 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.3e-50
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. ExPASy TrEMBL
Match: A0A6J1EML6 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435889 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.3e-50
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. NCBI nr
Match: XP_022136904.1 (ribosome biogenesis protein TSR3 homolog [Momordica charantia])

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           ED+CLP+DPANEEE AGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRV+
Sbjct: 28  EDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVS 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKED SLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 133

[Close]

BLAST of Lcy11g009500 vs. NCBI nr
Match: XP_022984901.1 (ribosome biogenesis protein TSR3 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. NCBI nr
Match: XP_022984902.1 (ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. NCBI nr
Match: XP_022929251.1 (ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. NCBI nr
Match: XP_023551798.1 (ribosome biogenesis protein TSR3 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 34  EDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRVN 93
           EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK        DLRVN
Sbjct: 28  EDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLK--------DLRVN 87

Query: 94  SGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           SGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRL
Sbjct: 88  SGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRL 133

[Close]

BLAST of Lcy11g009500 vs. TAIR 10
Match: AT5G10070.2 (RNase L inhibitor protein-related )

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-44
Identity = 84/115 (73.04%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 33  REDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRV 92
           REDE LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKLARF LLKE        LRV
Sbjct: 24  REDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKLARFNLLKE--------LRV 83

Query: 93  NSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           N+GFGG+VLSPVG  CVS+ED+ L+K+KGLAVVDCSWARL DVPF KLRC+APRL
Sbjct: 84  NTGFGGVVLSPVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLRCTAPRL 130

[Close]

BLAST of Lcy11g009500 vs. TAIR 10
Match: AT5G10070.1 (RNase L inhibitor protein-related )

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-44
Identity = 84/115 (73.04%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 33  REDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKETSVVFMQDLRV 92
           REDE LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKLARF LLKE        LRV
Sbjct: 24  REDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKLARFNLLKE--------LRV 83

Query: 93  NSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRL 148
           N+GFGG+VLSPVG  CVS+ED+ L+K+KGLAVVDCSWARL DVPF KLRC+APRL
Sbjct: 84  NTGFGGVVLSPVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLRCTAPRL 130

The following BLAST results are available for this feature:

BLAST of Lcy11g009500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5HZH2	2.6e-24	51.33	18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=...	[more]
Q9UJK0	9.2e-22	47.79	18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1	[more]
Q12094	7.3e-19	47.12	18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q10409	1.6e-13	36.84	18S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 ...	[more]
O26654	1.4e-06	31.25	16S rRNA aminocarboxypropyltransferase OS=Methanothermobacter thermautotrophicus...	[more]

BLAST of Lcy11g009500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5M7	9.8e-51	88.60	18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1J6L0	6.3e-50	87.72	18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830...	[more]
A0A6J1J3E9	6.3e-50	87.72	18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830...	[more]
A0A6J1ETU0	6.3e-50	87.72	18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1EML6	6.3e-50	87.72	18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Lcy11g009500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136904.1	2.0e-50	88.60	ribosome biogenesis protein TSR3 homolog [Momordica charantia]	[more]
XP_022984901.1	1.3e-49	87.72	ribosome biogenesis protein TSR3 homolog isoform X1 [Cucurbita maxima]	[more]
XP_022984902.1	1.3e-49	87.72	ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita maxima]	[more]
XP_022929251.1	1.3e-49	87.72	ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita moschata]	[more]
XP_023551798.1	1.3e-49	87.72	ribosome biogenesis protein TSR3 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy11g009500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10070.2	3.0e-44	73.04	RNase L inhibitor protein-related	[more]
AT5G10070.1	3.0e-44	73.04	RNase L inhibitor protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007177	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal	PFAM	PF04034	Ribo_biogen_C	coord: 99..147 e-value: 5.9E-10 score: 38.9
IPR007209	RNase L inhibitor RLI-like, possible metal-binding domain	PFAM	PF04068	RLI	coord: 54..81 e-value: 6.7E-13 score: 48.2
IPR022968	16S/18S rRNA aminocarboxypropyltransferase Tsr3	PANTHER	PTHR20426	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	coord: 32..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g009500.1	Lcy11g009500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0106388	18S rRNA aminocarboxypropyltransferase activity
molecular_function	GO:1904047	S-adenosyl-L-methionine binding
molecular_function	GO:0016740	transferase activity