Lcy11g009380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g009380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	nuclear transcription factor Y subunit B-like
Location	Chr11: 10184467 .. 10185282 (-)
RNA-Seq Expression	Lcy11g009380
Synteny	Lcy11g009380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCACCAAAACCCCCCCTCCGCCTCCAAATTCCGGCCAAACCCCTCCGCCATGAGCGGCCACAAGCGAAACCCCACCACCACCGCCGCCGCAGGCAGCCCCGTCGGCAGCCCCACCTCCGGCAACATCTCCGACAGCTCCACCAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAACGCCAAAATCTCGAAAGAAGCCAAGGAAACCGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAAAAACGGAAGACCATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCGGCCCTCTCAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTGGCCAGACAGGACGACCCCTCCCCGTCTCCGGCGAAATCCACGGCGGCGATCGCTTCCGCCGCCGCCTCCGACCAGATTATCGGTGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCGCACAATCACAATCATCATCAGGGAAATCAAAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGCTTCAATGTGAGTGGAGTCCATGAAAATGGAGAAGGAAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGATCCGCTTTTATATATATAAATATATATACTCGAAACATGAACAAGAACAGCCAAAAAAATGAAGG

mRNA sequence

CCACCACCAAAACCCCCCCTCCGCCTCCAAATTCCGGCCAAACCCCTCCGCCATGAGCGGCCACAAGCGAAACCCCACCACCACCGCCGCCGCAGGCAGCCCCGTCGGCAGCCCCACCTCCGGCAACATCTCCGACAGCTCCACCAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAACGCCAAAATCTCGAAAGAAGCCAAGGAAACCGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAAAAACGGAAGACCATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCGGCCCTCTCAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTGGCCAGACAGGACGACCCCTCCCCGTCTCCGGCGAAATCCACGGCGGCGATCGCTTCCGCCGCCGCCTCCGACCAGATTATCGGTGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCGCACAATCACAATCATCATCAGGGAAATCAAAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGCTTCAATGTGAGTGGAGTCCATGAAAATGGAGAAGGAAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGATCCGCTTTTATATATATAAATATATATACTCGAAACATGAACAAGAACAGCCAAAAAAATGAAGG

Coding sequence (CDS)

ATGAGCGGCCACAAGCGAAACCCCACCACCACCGCCGCCGCAGGCAGCCCCGTCGGCAGCCCCACCTCCGGCAACATCTCCGACAGCTCCACCAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAACGCCAAAATCTCGAAAGAAGCCAAGGAAACCGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAAAAACGGAAGACCATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCGGCCCTCTCAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTGGCCAGACAGGACGACCCCTCCCCGTCTCCGGCGAAATCCACGGCGGCGATCGCTTCCGCCGCCGCCTCCGACCAGATTATCGGTGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCGCACAATCACAATCATCATCAGGGAAATCAAAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGCTTCAATGTGAGTGGAGTCCATGAAAATGGAGAAGGAAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

Protein sequence

MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYSHNHNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW

Homology

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BLAST of Lcy11g009380 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.4e-44
Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 28  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 87
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 88  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDDPSPSPAKSTAA 147
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D         A 
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAG 135

Query: 148 IASAAA 153
             S  A
Sbjct: 136 SGSGGA 141

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BLAST of Lcy11g009380 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-43
Identity = 109/201 (54.23%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 12  AAAGSPVGSPT------SGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 71
           AA G   GS         G   DS  KEQDRFLPIANVSRIMK+SLPANAKISKE+KETV
Sbjct: 31  AAGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETV 90

Query: 72  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 131
           QECVSEFISF+TGEASDKCQREKRKTINGDDLLWAMTTLGFE YVGPLK YLN+YRE E 
Sbjct: 91  QECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEG 150

Query: 132 EKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYSHNHNHHQG 191
           EK  +      + +                  GG +   V+D     +G  SH+H+ HQ 
Sbjct: 151 EKADVLGGAGGAAAARHGEGGCCGGG------GGGADGVVIDGHYPLAGGLSHSHHGHQQ 210

Query: 192 NQKSFNIIDGVGFGESLRSFN 207
                ++   +G G++   +N
Sbjct: 211 QDGGGDVGLMMGGGDAGVGYN 225

[Close]

BLAST of Lcy11g009380 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 19  GSPTS-GNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 78
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 79  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 134
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Lcy11g009380 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-42
Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 13  AAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF 72
           + G   G+  +G  S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEF
Sbjct: 8   SGGGQNGNNQNGQ-SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 67

Query: 73  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 132
           ISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 68  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]

BLAST of Lcy11g009380 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-42
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 29  SSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 88
           SS +EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQREK
Sbjct: 20  SSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 79

Query: 89  RKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPAKSTAAIA 148
           RKTINGDDLLWAMTTLGFE+YV PLK YL+K+RE E E+           + A +T A  
Sbjct: 80  RKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER-----------AAASTTGAGT 133

Query: 149 SAAAS 154
           SAA++
Sbjct: 140 SAAST 133

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BLAST of Lcy11g009380 vs. ExPASy TrEMBL
Match: A0A6J1IZK6 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481354 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 205/237 (86.50%), Postives = 212/237 (89.45%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           M+GHKRNP TTA   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MNGHKRNP-TTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS--- 180
           RETEEEKHSLARQDD SPSPAKSTAA+ SA   + IIGGKSANSVMDFQN NSGFYS   
Sbjct: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCSA---EPIIGGKSANSVMDFQNLNSGFYSLGA 180

Query: 181 --HNHNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
             HNHNHH GNQKS++IIDGVGFGE+LR FN+S VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 HNHNHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 232

[Close]

BLAST of Lcy11g009380 vs. ExPASy TrEMBL
Match: A0A5D3CXU2 (Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005600 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.2e-102
Identity = 203/233 (87.12%), Postives = 211/233 (90.56%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG KRN TTT A  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS-HN 180
           RETEEEKHSLARQ+DPS SPAKS+A        + IIGGKSANSVMDFQNFNSGFYS  N
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSA--------EHIIGGKSANSVMDFQNFNSGFYSLGN 180

Query: 181 HNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
               QG+QKSFNIIDGVGFGE+LR FN++GVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 QIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Lcy11g009380 vs. ExPASy TrEMBL
Match: A0A1S3BY72 (nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC103494392 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.2e-102
Identity = 203/233 (87.12%), Postives = 211/233 (90.56%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG KRN TTT A  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS-HN 180
           RETEEEKHSLARQ+DPS SPAKS+A        + IIGGKSANSVMDFQNFNSGFYS  N
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSA--------EHIIGGKSANSVMDFQNFNSGFYSLGN 180

Query: 181 HNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
               QG+QKSFNIIDGVGFGE+LR FN++GVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 QIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Lcy11g009380 vs. ExPASy TrEMBL
Match: A0A0A0KXV6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G037610 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.1e-101
Identity = 202/233 (86.70%), Postives = 209/233 (89.70%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG KRN   T A  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS-HN 180
           RETEEEKHSLARQ+DPS SP KS        A++ IIGGKSANSVMDFQNFNSGFYS  N
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKS--------AAEHIIGGKSANSVMDFQNFNSGFYSLGN 180

Query: 181 HNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
              +QGNQKSFNIIDGVGFGE+LR FN++GVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 QIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Lcy11g009380 vs. ExPASy TrEMBL
Match: A0A6J1FNG6 (transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC111447051 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 1.0e-99
Identity = 202/240 (84.17%), Postives = 209/240 (87.08%), Query Frame = 0


Query: 1   MSGHKRNPTT---TAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKI 60
           M+GHKRN TT   TA   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKI
Sbjct: 1   MNGHKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKI 60

Query: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYL 120
           SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YL
Sbjct: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYL 120

Query: 121 NKYRETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS 180
           NKYRETEEEKHSLARQDD SPSPAKSTAA+  A   + IIGGKSANSV DFQN NSGFYS
Sbjct: 121 NKYRETEEEKHSLARQDDHSPSPAKSTAAVCPA---EPIIGGKSANSVFDFQNLNSGFYS 180

Query: 181 -----HNHNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
                HNHNHHQGN KS++IIDGVGFGE+LR FN+S VHEN EGNR RAMA HLQQSSGW
Sbjct: 181 LGAHNHNHNHHQGNPKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAPHLQQSSGW 236

[Close]

BLAST of Lcy11g009380 vs. NCBI nr
Match: XP_038898148.1 (nuclear transcription factor Y subunit B-like [Benincasa hispida])

HSP 1 Score: 391.0 bits (1003), Expect = 7.3e-105
Identity = 210/234 (89.74%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAG-SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK 60
           MSGHKRN TTTAAA  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK
Sbjct: 1   MSGHKRNFTTTAAAAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK 60

Query: 61  EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNK 120
           EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK+YLNK
Sbjct: 61  EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKMYLNK 120

Query: 121 YRETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS-H 180
           YRETEEEKHSLARQDDPS SPAKS        A++QII GKSANSVMDFQNFNSGFYS  
Sbjct: 121 YRETEEEKHSLARQDDPSLSPAKS--------AAEQIISGKSANSVMDFQNFNSGFYSLG 180

Query: 181 NHNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
           N N +QGNQKSFNIIDGVGFGESLR FN++GVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 NQNQNQGNQKSFNIIDGVGFGESLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226

[Close]

BLAST of Lcy11g009380 vs. NCBI nr
Match: XP_022982531.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita maxima])

HSP 1 Score: 382.1 bits (980), Expect = 3.4e-102
Identity = 205/237 (86.50%), Postives = 212/237 (89.45%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           M+GHKRNP TTA   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MNGHKRNP-TTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS--- 180
           RETEEEKHSLARQDD SPSPAKSTAA+ SA   + IIGGKSANSVMDFQN NSGFYS   
Sbjct: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCSA---EPIIGGKSANSVMDFQNLNSGFYSLGA 180

Query: 181 --HNHNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
             HNHNHH GNQKS++IIDGVGFGE+LR FN+S VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 HNHNHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 232

[Close]

BLAST of Lcy11g009380 vs. NCBI nr
Match: XP_023552553.1 (nuclear transcription factor Y subunit B-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 7.6e-102
Identity = 205/237 (86.50%), Postives = 212/237 (89.45%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           M+GHKRNP TTA   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MNGHKRNP-TTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS--- 180
           RETEEEKHSLARQDD SPSPAKSTAA+  A   + IIGGKSANSVMDFQN NSGFYS   
Sbjct: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCPA---EPIIGGKSANSVMDFQNLNSGFYSLGA 180

Query: 181 --HNHNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
             HNHNHHQGNQKS++IIDGVGFGE+LR FN+S VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 HNHNHNHHQGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 232

[Close]

BLAST of Lcy11g009380 vs. NCBI nr
Match: XP_008453748.1 (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA0044740.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa] >TYK16723.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 379.8 bits (974), Expect = 1.7e-101
Identity = 203/233 (87.12%), Postives = 211/233 (90.56%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG KRN TTT A  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS-HN 180
           RETEEEKHSLARQ+DPS SPAKS+A        + IIGGKSANSVMDFQNFNSGFYS  N
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSA--------EHIIGGKSANSVMDFQNFNSGFYSLGN 180

Query: 181 HNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
               QG+QKSFNIIDGVGFGE+LR FN++GVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 QIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Lcy11g009380 vs. NCBI nr
Match: XP_004149164.1 (nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nuclear transcription factor Y subunit B-like [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 8.4e-101
Identity = 202/233 (86.70%), Postives = 209/233 (89.70%), Query Frame = 0


Query: 1   MSGHKRNPTTTAAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG KRN   T A  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDPSPSPAKSTAAIASAAASDQIIGGKSANSVMDFQNFNSGFYS-HN 180
           RETEEEKHSLARQ+DPS SP KS        A++ IIGGKSANSVMDFQNFNSGFYS  N
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKS--------AAEHIIGGKSANSVMDFQNFNSGFYSLGN 180

Query: 181 HNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW 233
              +QGNQKSFNIIDGVGFGE+LR FN++GVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 QIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Lcy11g009380 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-45
Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 28  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 87
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 88  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDDPSPSPAKSTAA 147
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D         A 
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAG 135

Query: 148 IASAAA 153
             S  A
Sbjct: 136 SGSGGA 141

[Close]

BLAST of Lcy11g009380 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-43
Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 19  GSPTS-GNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 78
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 79  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 134
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Lcy11g009380 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-43
Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 13  AAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF 72
           + G   G+  +G  S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEF
Sbjct: 8   SGGGQNGNNQNGQ-SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 67

Query: 73  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 132
           ISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 68  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]

BLAST of Lcy11g009380 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-40
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 14  AGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFI 73
           A +P      G  S  S +EQDR+LPIAN+SRIMKK+LP N KI K+AK+TVQECVSEFI
Sbjct: 2   ADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFI 61

Query: 74  SFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 133
           SFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+ PLKIYL +YRE E +     + 
Sbjct: 62  SFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKS 121

Query: 134 DDPS 138
            D S
Sbjct: 122 GDGS 125

[Close]

BLAST of Lcy11g009380 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-40
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 14  AGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFI 73
           A +P      G  S  S +EQDR+LPIAN+SRIMKK+LP N KI K+AK+TVQECVSEFI
Sbjct: 2   ADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFI 61

Query: 74  SFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 133
           SFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+ PLKIYL +YRE E +     + 
Sbjct: 62  SFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKS 121

Query: 134 DDPS 138
            D S
Sbjct: 122 GDGS 125

The following BLAST results are available for this feature:

BLAST of Lcy11g009380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	3.4e-44	76.19	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q0J7P4	3.7e-43	54.23	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9SIT9	1.4e-42	75.00	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	3.2e-42	73.33	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	3.2e-42	74.40	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Lcy11g009380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZK6	1.6e-102	86.50	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3CXU2	8.2e-102	87.12	Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BY72	8.2e-102	87.12	nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KXV6	4.1e-101	86.70	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0376...	[more]
A0A6J1FNG6	1.0e-99	84.17	transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC11144705...	[more]

BLAST of Lcy11g009380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898148.1	7.3e-105	89.74	nuclear transcription factor Y subunit B-like [Benincasa hispida]	[more]
XP_022982531.1	3.4e-102	86.50	nuclear transcription factor Y subunit B-1-like [Cucurbita maxima]	[more]
XP_023552553.1	7.6e-102	86.50	nuclear transcription factor Y subunit B-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008453748.1	1.7e-101	87.12	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA00...	[more]
XP_004149164.1	8.4e-101	86.70	nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nucle...	[more]

BLAST of Lcy11g009380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	2.4e-45	76.19	nuclear factor Y, subunit B3	[more]
AT2G13570.1	1.0e-43	75.00	nuclear factor Y, subunit B7	[more]
AT5G47640.1	2.2e-43	73.33	nuclear factor Y, subunit B2	[more]
AT2G38880.2	4.0e-40	65.32	nuclear factor Y, subunit B1	[more]
AT2G38880.3	4.0e-40	65.32	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 103..121 score: 41.63 coord: 65..83 score: 50.24 coord: 84..102 score: 38.52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR11064:SF98	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11	coord: 17..193
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 37..101 e-value: 7.0E-27 score: 93.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 24..156 e-value: 3.8E-47 score: 161.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 34..138
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 17..193
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 68..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g009380.1	Lcy11g009380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding