Lcy11g008270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g008270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription initiation factor IIE subunit beta
Location	Chr11: 8696010 .. 8698835 (+)
RNA-Seq Expression	Lcy11g008270
Synteny	Lcy11g008270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGCGATATAAATTCCAACAAATCTGTTTATGACAGTCTGCGGAATAACCCAAAGGTCCACTATGATGGGAGACGTTTCTCATACAAGGTAATTTGTATTCTCAATTACCTGTAAAATTTGCATGAACTTGTACTTATTTTGTTGACATGTTTGGACCTTCAATGGAGGCTGACATTTTTTCCTCATGTATTCAGTCCAAGCATGACCTGAAGGATAAGAACCAAGTTCTATACTTGATACAGAAATTTCCAGAAGGCATTGCTGTCATTGATCTGAAGGATGCTTATCCAACCATTATTGAGGACTTGCAAGTATGTATACTTGAGTAATTTTTTATGTGCCTTTTCTTTTTTGACTGGAAAAGTGCTATATACCAAGAAATCCTTGGATGATGCTATCCTCATTGAACAGATTCGGCATCAACTTTTGTAGAGTTTAATATAGGGACAATTTAGGGCTTCAAATATCTTATGCAAGAGTTCTTCGGGTTGTGTATTTTATTTGCATAGTAATAGGAATTATAGTTAGTTTGTAGTTCTAATTACTCAGGAGATAAATACAAGAATCTATTGGTGTCTAGATTCGGTGGTGTATTTGGTAGATTTGGACTTCTTGTATATAGGTGCTATGTAAGATTTAAGTAATCAATATATGAAGTCTTGATTTGACTAATAAAGGGATTGATTGAGAGTGTTACAAAGAACAACTCTATGTTTTTTGGTATCTTGTGTGAATAGCACAAAAACTTTCTAAACAATCAACCAAAAGTTGTTCTTAAAAGAAGTTTTGAAAATAAAAGCAGAGGAGTGTTTTCCTGAATAGCACTCAAAAAAGCCCCTAAATTCCTTTGAGCTACTAATCACATGTATTTTCTTTCCTCCCCCTTCTTGTTTATTTTTCTTCTCTTTCCTCCATCCCCTCCACCATATGGTGTCAGTACTAGATTGATCAAACAAGTTCATTGCTTTCTGCTGAAATCTGACTGATTCTCATATGGCTCATTCATTATTCATGTCAGTGTTTACGGTTGTCGGTTACTTTTGATGTCATATCTCATAAGTTAGCTTATGAGAGGAAGGAATGATAGAATTTCTAGAGGGGTCGAGAGACTTCCTTGTGAGGTTTGAGCCAATATTAGATTTTACTGATTTGTTGGTGCTTGGTTTTTAGGATGTCCTTGTATTCTTTCATTTTTTCTCAATGAAAGTTCGGTTCTTTATTAAAAAAAATCTCATAAGTTAGTTTGTATGGTGATCTTTTCAGGTTAGGATGTGGTGTCCCCTTGTACATTCAAAGGTTTTTGTAAGGTATTCCCCTACTGTATATCGGTAAACTGTGAAAGACAATGCCCAAAGGCAATACAAAATATCCCAGCTTATTGCAGAGTGCTGGTAAACTCTCCCTTCCTCTCCAAGCTCACTAAAGCAACAACACAAAAAGCATAAAGACTGGCTAACGTTACTTTCCTACGTATATACTACCCACATTCCTTCCATGGCCCCCCTTCCTACATAACTAACTTGTCGAGAGTGAATTACCCTTCCTACCCCTCCTTGTATACTTAATTATGATTGGGGCCTAACAGTTTCTTCATTCAACATTTCCTATTCCTGAAGATTAAGAGACTGACTGTTTTTTTGAGCAGTTGAAATTTTAAATTGAAGTATTTAGCCCCACGGCTCATGGTCTTTATCAAGATTGTTGCATGTAAACTTCAGTTGAGAATTTATAAAAATCTACAAGAAACGTTTGGCTTTTGGTTTAAAACCTGTACAAAAAGCTAGAAAACGAATAGAGTGGTAGTGGTCCTATCATCAATGTCATCCATCTACAACTTCAGTTTCTCCATCAAATAAACTTGGAAATCATGATTAGTCAATCGAGGCCAATAAGAAGATTAAGAATTGATGATAACATGTTATTGAGTACGAAAGTTACATGGTGATGTAGAGATCCATAGAGACTGAGTAATTTCAACAACCCAGTTGAGCATTATTAAATCTTGGAAGTTTTCTATGAATGATTGACTTTGTCATCTGAAAAAAGGTTTGAAAACTGAAATGCAAAGCATTCTCATGATATAAGTGAAAGCATAAACTTTTCTTATGAATTAAAAGTCGATCAAAATGATCTCTGCTTCTAGAATACGCATCCTTGAGTGCTTTGAAGCTTGAGGAGGATTAGCTTTCTTCCACCAGGGAAGACCAGGGTCATGTAGAAAATTACTGTTTTATGTGAGGTTTTTGATCGCGTTTGAATTAGGAGTCATAGTTAGTTTATCTGATTAGCAGGTTACTACGGGAGTTTTGTTAGAATTTTGTTCTTTTTATAATAACAATCATGTCCATACTAATAAGAACGATTTTAAATCTTAGAAGTTCGTTATTTGACCTATAACCATTGCTTTTGAGTTATGCATCAAGTTATGAGGAGTGATTTGTGGGAAGCTCCTTTTAAATTAGAATGTATTCCAAACGGACCCTTATTCTTTTGAGCTAATAGTATCTCTTCCCCACTTGTTTATTAGGCTCTAAAAGCCTCTGGTCAGCTTCTCTCAAACTTTGATTTGCAAGAAGATATTCATATCCAAATGGTCCAAGAATTCAAATCAAGGTAGACGGCGGCGATCTGAAGCAACTATTGAATTACCTCATGACTTGCTTGGTGTTGAAGATGAAGCCTGAAGCGAACACTGCAAAGAGGCGTGCCAATGCACAACACTTGGCGTCCTTGAAACAGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATGTTCCCGAGCTCTTCAAAAATTAG

mRNA sequence

ATGCTATGCGATATAAATTCCAACAAATCTGTTTATGACAGTCTGCGGAATAACCCAAAGGTCCACTATGATGGGAGACGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAACCAAGTTCTATACTTGATACAGAAATTTCCAGAAGGCATTGCTGTCATTGATCTGAAGGATGCTTATCCAACCATTATTGAGGACTTGCAAGTTAGGATGTGGTGTCCCCTTGTACATTCAAAGGTTTTTGTAAGAAGATATTCATATCCAAATGGTCCAAGAATTCAAATCAAGGTAGACGGCGGCGATCTGAAGCAACTATTGAATTACCTCATGACTTGCTTGGTGTTGAAGATGAAGCCTGAAGCGAACACTGCAAAGAGGCGTGCCAATGCACAACACTTGGCGTCCTTGAAACAGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATGTTCCCGAGCTCTTCAAAAATTAG

Coding sequence (CDS)

ATGCTATGCGATATAAATTCCAACAAATCTGTTTATGACAGTCTGCGGAATAACCCAAAGGTCCACTATGATGGGAGACGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAACCAAGTTCTATACTTGATACAGAAATTTCCAGAAGGCATTGCTGTCATTGATCTGAAGGATGCTTATCCAACCATTATTGAGGACTTGCAAGTTAGGATGTGGTGTCCCCTTGTACATTCAAAGGTTTTTGTAAGAAGATATTCATATCCAAATGGTCCAAGAATTCAAATCAAGGTAGACGGCGGCGATCTGAAGCAACTATTGAATTACCTCATGACTTGCTTGGTGTTGAAGATGAAGCCTGAAGCGAACACTGCAAAGAGGCGTGCCAATGCACAACACTTGGCGTCCTTGAAACAGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATGTTCCCGAGCTCTTCAAAAATTAG

Protein sequence

MLCDINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQVRMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQLLNYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN

Homology

[Close]

BLAST of Lcy11g008270 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.6e-53
Identity = 122/178 (68.54%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP
Sbjct: 103 DINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP 162

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 163 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 222

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 223 DVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Lcy11g008270 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.6e-53
Identity = 122/178 (68.54%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP
Sbjct: 103 DINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP 162

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 163 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 222

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 223 DVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Lcy11g008270 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.6e-53
Identity = 121/178 (67.98%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYL++KFPEGIAVIDLKDAYP
Sbjct: 103 DINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYP 162

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 163 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 222

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 223 DVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Lcy11g008270 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 119/178 (66.85%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKD+YP
Sbjct: 100 DINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP 159

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 160 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 219

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQ++AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 220 DVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Lcy11g008270 vs. ExPASy TrEMBL
Match: A0A6J1ETU7 (Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111437664 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 119/178 (66.85%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKD+YP
Sbjct: 100 DINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP 159

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 160 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 219

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQ++AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 220 DVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Lcy11g008270 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >KAA0044840.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa] >TYK16624.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 122/178 (68.54%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP
Sbjct: 103 DINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP 162

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 163 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 222

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 223 DVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Lcy11g008270 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 121/178 (67.98%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYL++KFPEGIAVIDLKDAYP
Sbjct: 103 DINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYP 162

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 163 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 222

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 223 DVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Lcy11g008270 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 5.7e-51
Identity = 120/178 (67.42%), Postives = 135/178 (75.84%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP
Sbjct: 101 DINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP 160

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 161 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 220

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQH+AS K K KKKKQEISKRTKLTNAH+PELFKN
Sbjct: 221 DVEKDLQKNGMKPATNTAKRRANAQHVASSKPKLKKKKQEISKRTKLTNAHLPELFKN 275

[Close]

BLAST of Lcy11g008270 vs. NCBI nr
Match: XP_022984812.1 (general transcription factor IIE subunit 2-like [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 5.7e-51
Identity = 119/178 (66.85%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKD+YP
Sbjct: 100 DINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP 159

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 160 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 219

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQ++AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 220 DVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Lcy11g008270 vs. NCBI nr
Match: XP_022931511.1 (general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_023552207.1 general transcription factor IIE subunit 2-like [Cucurbita pepo subsp. pepo] >KAG7015180.1 General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 5.7e-51
Identity = 119/178 (66.85%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKD+YP
Sbjct: 100 DINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP 159

Query: 64  TIIEDLQV-----RMWCPLVHSKVFVRRYSYPNGPRIQIKVDGGDLKQL----------L 123
           +++EDLQ      ++W  L+ +       +YPN PRIQIKVD  DLKQL          L
Sbjct: 160 SVMEDLQALKASGQVW--LLSNFDSQEDIAYPNDPRIQIKVD-DDLKQLFREIELPRDML 219

Query: 124 NYLMTCLVLKMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHVPELFKN 167
           +         MKP  NTAKRRANAQ++AS K KPKKKKQEISKRTKLTNAH+PELFKN
Sbjct: 220 DVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Lcy11g008270 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-37
Identity = 90/175 (51.43%), Postives = 120/175 (68.57%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           D+++NK+V+DSLR NPK HYDGRRFSYK+ HD+ DKNQ+L L++K+ +GIAV+DLKDAYP
Sbjct: 104 DMHANKAVFDSLRKNPKAHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYP 163

Query: 64  TIIEDLQVRMWCPLVHSKVFVRR-YSYPNGPRIQIKVDG------GDL---KQLLNYLMT 123
            ++EDL+       ++     +   +YPN  + +IKVD        D+     +L+    
Sbjct: 164 NVMEDLKALSASGDIYLLSNSQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKE 223

Query: 124 CLVLKMKPEANTAKRRANAQ-HLASLKQK-PKKKKQEISKRTKLTNAHVPELFKN 167
            L + +KP  NTA+RRA AQ H  S K K  KKKKQEISKRTKLTNAH+PELF+N
Sbjct: 224 LLKIGLKPATNTAERRAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQN 278

[Close]

BLAST of Lcy11g008270 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 0


Query: 4   DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYP 63
           D+++NK+V+DSLR NPKVHYDGRRFSYK+ H++KDK Q+L  + K  + I V DLKDAYP
Sbjct: 100 DMHNNKAVFDSLRKNPKVHYDGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYP 159

Query: 64  TIIEDL-------QVRMWCPLVHSK---VFVRRYSYPNGPRIQIKVDGGDL--KQLLNYL 123
            ++EDL       ++        SK   V+     YP     ++K    D+    +L   
Sbjct: 160 NVMEDLKSLKSSGEIFWLLSNTDSKEGTVYRNNMEYPKIDD-ELKALFRDIIPSDMLEVE 219

Query: 124 MTCLVLKMKPEANTAKRRANAQHLASLKQKP---KKKKQEISKRTKLTNAHVPELFKN 167
              L + +KP  N A+RRA A+ L  +  KP   KKKK+EI+ RTKLTN+H+ ELF++
Sbjct: 220 KELLKIGLKPATNIAERRA-AEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275

The following BLAST results are available for this feature:

BLAST of Lcy11g008270 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g008270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BS95	6.6e-53	68.54	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TNR4	6.6e-53	68.54	Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0KWU5	8.6e-53	67.98	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A6J1J372	2.8e-51	66.85	Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1ETU7	2.8e-51	66.85	Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Lcy11g008270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452012.1	1.4e-52	68.54	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_00...	[more]
XP_011653191.1	1.8e-52	67.98	general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothe...	[more]
XP_038906431.1	5.7e-51	67.42	general transcription factor IIE subunit 2-like [Benincasa hispida]	[more]
XP_022984812.1	5.7e-51	66.85	general transcription factor IIE subunit 2-like [Cucurbita maxima]	[more]
XP_022931511.1	5.7e-51	66.85	general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_0235522...	[more]

BLAST of Lcy11g008270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20330.1	3.8e-37	51.43	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	2.7e-27	43.26	Transcription initiation factor TFIIE, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..166
None	No IPR available	PANTHER	PTHR12716:SF13	BNAA02G21830D PROTEIN	coord: 3..166
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 3..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g008270.1	Lcy11g008270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0016020	membrane
cellular_component	GO:0005673	transcription factor TFIIE complex