Lcy11g007060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g007060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr11: 7166739 .. 7167080 (+)
RNA-Seq Expression	Lcy11g007060
Synteny	Lcy11g007060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAGCTCAACTCAGACATGCGTGGATTGATGCGAACAGGAGAGGTGGCTTGGGTTGGGTGATTCGTGACTCCTCCGGATCTTTGATTGGTGCGGGTTGTGTTCAAGTTGATAGGAAATGGTCGATTAAGGCTATGGAAGGGCAAGCGATTATAGAGGGGTTAAAGGCTTACCATTCTCTATCCAATAAAGGAGGGGTTGGGGTCAAGCCACCCCTTATTGTAGAGTTTGACTCCTTCGACGTTGTGAAAGCAATCAATGGTGAGGAGGAAGATTTGTCTGAGATCGCCTTGGTTGTGGATTCGATCGTCGAGAAGACAAGAGGAGAAGTCATCTAG

mRNA sequence

ATGGTGGAAGCTCAACTCAGACATGCGTGGATTGATGCGAACAGGAGAGGTGGCTTGGGTTGGGTGATTCGTGACTCCTCCGGATCTTTGATTGGTGCGGGTTGTGTTCAAGTTGATAGGAAATGGTCGATTAAGGCTATGGAAGGGCAAGCGATTATAGAGGGGTTAAAGGCTTACCATTCTCTATCCAATAAAGGAGGGGTTGGGGTCAAGCCACCCCTTATTGTAGAGTTTGACTCCTTCGACGTTGTGAAAGCAATCAATGGTGAGGAGGAAGATTTGTCTGAGATCGCCTTGGTTGTGGATTCGATCGTCGAGAAGACAAGAGGAGAAGTCATCTAG

Coding sequence (CDS)

ATGGTGGAAGCTCAACTCAGACATGCGTGGATTGATGCGAACAGGAGAGGTGGCTTGGGTTGGGTGATTCGTGACTCCTCCGGATCTTTGATTGGTGCGGGTTGTGTTCAAGTTGATAGGAAATGGTCGATTAAGGCTATGGAAGGGCAAGCGATTATAGAGGGGTTAAAGGCTTACCATTCTCTATCCAATAAAGGAGGGGTTGGGGTCAAGCCACCCCTTATTGTAGAGTTTGACTCCTTCGACGTTGTGAAAGCAATCAATGGTGAGGAGGAAGATTTGTCTGAGATCGCCTTGGTTGTGGATTCGATCGTCGAGAAGACAAGAGGAGAAGTCATCTAG

Protein sequence

MVEAQLRHAWIDANRRGGLGWVIRDSSGSLIGAGCVQVDRKWSIKAMEGQAIIEGLKAYHSLSNKGGVGVKPPLIVEFDSFDVVKAINGEEEDLSEIALVVDSIVEKTRGEVI

Homology

[Close]

BLAST of Lcy11g007060 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.4e-08
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 9   AWIDANRRGGLGWVIRDSSGSLIGAGCVQVDRKWSIKAMEGQAIIEGLKAYHSLSNKGGV 68
           +W D+  RGG+GW+IR   G ++ AG   V+   ++K +E  AI+EGL+      N   +
Sbjct: 86  SWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR------NLTNL 145

Query: 69  GVKPPLIVEFDSFDVVKAINGEEEDLSEIALVVDSIV 106
           GV  PL +E DS +V   +N + EDL++   VV+ I+
Sbjct: 146 GVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEIL 176

[Close]

BLAST of Lcy11g007060 vs. ExPASy TrEMBL
Match: A0A6J5UV01 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32434 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-04
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 9    AWIDANRRGGLGWVIRDSSGSLIGAGCVQVDRKWSIKAMEGQAIIEGLKAYHSLSNKGGV 68
            AW+   + GG+GWV+RDS G ++ AGC    R  S  AME +AI E L A      + G+
Sbjct: 1074 AWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALLA----CVQSGL 1133

Query: 69   GVKPPLIVEFDSFDVVKAINGEEEDLSEIALVVDSIV 106
                 L VE DS  +++ + GE      I + V++IV
Sbjct: 1134 S---KLEVESDSLQLIRMLGGE----WNIDIAVETIV 1159

[Close]

BLAST of Lcy11g007060 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-08
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 9   AWIDANRRGGLGWVIRDSSGSLIGAGCVQVDRKWSIKAMEGQAIIEGLKAYHSLSNKGGV 68
           +W +   +GG+ WVI DS GS I   C ++ RKW +K +EG+A+IEGLK Y  +      
Sbjct: 13  SWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYLLIRETVSY 72

Query: 69  GVKPPLIVEFDSFDVVKAINGEEEDLSEIALVVDSIVE 107
             +P + +E     + + +N    DL E++ VVD I +
Sbjct: 73  SHRPIIFLE-----LARILNNTHMDLIELSNVVDEIFD 105

[Close]

BLAST of Lcy11g007060 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-08
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 9   AWIDANRRGGLGWVIRDSSGSLIGAGCVQVDRKWSIKAMEGQAIIEGLKAYHSLSNKGGV 68
           +W D+  RGG+GW+IR   G ++ AG   V+   ++K +E  AI+EGL+      N   +
Sbjct: 86  SWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR------NLTNL 145

Query: 69  GVKPPLIVEFDSFDVVKAINGEEEDLSEIALVVDSIV 106
           GV  PL +E DS +V   +N + EDL++   VV+ I+
Sbjct: 146 GVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEIL 176

[Close]

BLAST of Lcy11g007060 vs. NCBI nr
Match: XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 18  GLGWVIRDSSGSLIGAGCVQVDRKWSIKAMEGQAIIEGLKAYHSLSNKGGVGVKPPLIVE 77
           GLG V+RD  G ++  G  Q+   W ++  E +AI  GL+         G+GV+  L+VE
Sbjct: 178 GLGAVVRDEVGIVVAVGVQQIKASWEVRIAEAKAIEWGLRV------AAGLGVR-DLVVE 237

Query: 78  FDSFDVVKAINGEEEDLSEIALVVDSIV 106
            D   V++A+  +  DLSE++L++D I+
Sbjct: 238 SDCLQVIQALKNKTADLSELSLIIDDIL 258

The following BLAST results are available for this feature:

BLAST of Lcy11g007060 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g007060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	4.4e-08	37.11	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5UV01	8.5e-04	37.11	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]

BLAST of Lcy11g007060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599977.1	6.9e-08	35.71	hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022155262.1	9.0e-08	37.11	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_021753633.1	2.5e-05	35.23	uncharacterized protein LOC110719026 [Chenopodium quinoa]	[more]

BLAST of Lcy11g007060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 9..110 e-value: 4.6E-6 score: 28.7
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 12..105 e-value: 1.6E-12 score: 47.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g007060.1	Lcy11g007060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity