Lcy11g006570 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g006570
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	VQ domain-containing protein
Location	Chr11: 6562732 .. 6563307 (-)
RNA-Seq Expression	Lcy11g006570
Synteny	Lcy11g006570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTTTTCTCTTCTCTCTTTCCTTCTTCTTTCTTCTGTAATTATAAAATCCCTTCACCCCTTCCATTAAAACCCCAAAACCCATCAAAACCCACTTCTCAAAATTCCTCCTTTTTGCTCTCATCTTCTTCCCAACACAAGAATCTCTCCATTTCTCCATTGATATGTCTGGTGGAGAAGCTCATTCGACTAGGGTTGTCATTATTGACACCAAGTATGTGCACACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACCGGGAGAGATCCGATGGCGGCCGTGGTGGAGGAGAACCGACATGTCGGTGGGGGCCGGAGCTCGGGTCTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAATTGATCGATGATCTTTATGCTGATTGAATAGGGACTGAGTTTTCTCTTTTGGTGATCTAGGTTTTGCTTAGTGTTATTTATATACACTTTATTGATGAATAATTCTTTTATTAATTTTTTTGACCCTTTTGTTTTGTTTGTTTGTGTGTGTATATGTGATTAATAATTTTTCATTGTTTAATTCA

mRNA sequence

CTCCCTTTTCTCTTCTCTCTTTCCTTCTTCTTTCTTCTGTAATTATAAAATCCCTTCACCCCTTCCATTAAAACCCCAAAACCCATCAAAACCCACTTCTCAAAATTCCTCCTTTTTGCTCTCATCTTCTTCCCAACACAAGAATCTCTCCATTTCTCCATTGATATGTCTGGTGGAGAAGCTCATTCGACTAGGGTTGTCATTATTGACACCAAGTATGTGCACACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACCGGGAGAGATCCGATGGCGGCCGTGGTGGAGGAGAACCGACATGTCGGTGGGGGCCGGAGCTCGGGTCTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAATTGATCGATGATCTTTATGCTGATTGAATAGGGACTGAGTTTTCTCTTTTGGTGATCTAGGTTTTGCTTAGTGTTATTTATATACACTTTATTGATGAATAATTCTTTTATTAATTTTTTTGACCCTTTTGTTTTGTTTGTTTGTGTGTGTATATGTGATTAATAATTTTTCATTGTTTAATTCA

Coding sequence (CDS)

ATGTCTGGTGGAGAAGCTCATTCGACTAGGGTTGTCATTATTGACACCAAGTATGTGCACACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACCGGGAGAGATCCGATGGCGGCCGTGGTGGAGGAGAACCGACATGTCGGTGGGGGCCGGAGCTCGGGTCTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAATTGATCGATGA

Protein sequence

MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGLLRDSSFKEFQRVLREMPRIDR

Homology

[Close]

BLAST of Lcy11g006570 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 10 RVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAA--------------------VVEENRHV 69
          +VV I+T+YV TDA+SFKTVVQ+LTG++ + A                    + E+ R +
Sbjct: 13 KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 70 GGGRSSGLLRDSSFKEFQRVLREMPRID 78
           GG   G  R  +  EF R+ +EMP ++
Sbjct: 73 HGGGGGG-GRMGTTTEFDRLFKEMPHME 99

[Close]

BLAST of Lcy11g006570 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.7e-05
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 2  SGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGLLRDS 61
          +G  +   +VV I+T+YV TDA+SFKT+VQ+LTG++   AVV +  +   G+  G  +DS
Sbjct: 3  AGVRSEPMKVVFINTQYVQTDARSFKTIVQELTGKN---AVVADGPYEFSGQGYG-GKDS 62

Query: 62 SFK---------------EFQRVLREMPRI 77
          S +               EF    REMP +
Sbjct: 63 SQRFCGVGKEAERGVETTEFDSFFREMPPV 88

[Close]

BLAST of Lcy11g006570 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGL-LR 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTG+DP    VEENR   GG SSGL + 
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDP---AVEENRQTSGGWSSGLVIT 60

Query: 61 DSSFKEFQRVLREMPRIDR 79
          DSSFK+FQ  LREMP I R
Sbjct: 61 DSSFKKFQTELREMPTIHR 76

[Close]

BLAST of Lcy11g006570 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-22
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGR-SSGLLR 60
          M+GGEA STRVVIIDTKYVHTDAKSFKTVVQKLTG+DP AA  E+ R  GGG  SS L R
Sbjct: 1  MAGGEAPSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTR 60

Query: 61 DSSFKEFQRVLREMPR 76
          DSSFKEFQRVLREM +
Sbjct: 61 DSSFKEFQRVLREMAK 76

[Close]

BLAST of Lcy11g006570 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.3e-21
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEE-NRHVGGGRSSGLLRDSSFKE 66
          HSTRVVIIDTKYV TDAKSFKTVVQKLTG+D + AV EE  R  G  R+S LLRDSSFKE
Sbjct: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSFKE 64

Query: 67 FQRVLREMPRID 78
          FQRVLREMPRID
Sbjct: 65 FQRVLREMPRID 76

[Close]

BLAST of Lcy11g006570 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEE-NRHVGGGRSSGLLRDSSFKE 66
          HSTRVVIIDTKYV TDAKSFKTVVQKLTG+D +  V EE  R  G  R+S LLRDSSFKE
Sbjct: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSFKE 64

Query: 67 FQRVLREMPRID 78
          FQRVLREMPRID
Sbjct: 65 FQRVLREMPRID 76

[Close]

BLAST of Lcy11g006570 vs. ExPASy TrEMBL
Match: A0A3Q0EY25 (VQ motif-containing protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760578 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 10 RVVIIDTKYVHTDAKSFKTVVQKLTGR--DPMAAVVEENRH-VGGGRSSGLLRDSSFKEF 69
          +VVII+T+YV TDA SFK+VVQKLTG+  D   A V+ NRH  GG + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 70 QRVLREMPRID 78
           R+LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Lcy11g006570 vs. NCBI nr
Match: XP_038889427.1 (VQ motif-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 6  AHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGLLRDSSFKE 65
          AHSTRVVIIDTKYV TDAKSFKTVVQKLTG+D +A   EENRH GG R+SGLLRDSSFKE
Sbjct: 4  AHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVAE--EENRHTGGTRNSGLLRDSSFKE 63

Query: 66 FQRVLREMPRID 78
          FQRVLREMPRID
Sbjct: 64 FQRVLREMPRID 73

[Close]

BLAST of Lcy11g006570 vs. NCBI nr
Match: KAG6600481.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGL-LR 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTG+DP A   EENR  GGG SSGL + 
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA---EENRQTGGGWSSGLVIT 60

Query: 61 DSSFKEFQRVLREMPRIDR 79
          DSSFK+FQ  LREMP I R
Sbjct: 61 DSSFKKFQTELREMPTIHR 76

[Close]

BLAST of Lcy11g006570 vs. NCBI nr
Match: KAG6577059.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015070.1 VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 6  AHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGLLRDSSFKE 65
          A+STRVVIIDTKYV TDAKSFKTVVQKLTG+DP+A   EENRH  G R+S LLRDSSFKE
Sbjct: 3  AYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA---EENRHGDGARNSSLLRDSSFKE 62

Query: 66 FQRVLREMPRID 78
          FQRVLREMPRID
Sbjct: 63 FQRVLREMPRID 71

[Close]

BLAST of Lcy11g006570 vs. NCBI nr
Match: XP_022942030.1 (VQ motif-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 5.8e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGL-LR 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTG+DP    VEENR   GG SSGL + 
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDP---AVEENRQTSGGWSSGLVIT 60

Query: 61 DSSFKEFQRVLREMPRIDR 79
          DSSFK+FQ  LREMP I R
Sbjct: 61 DSSFKKFQTELREMPTIHR 76

[Close]

BLAST of Lcy11g006570 vs. NCBI nr
Match: XP_022142787.1 (VQ motif-containing protein 10-like [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 9.9e-22
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGR-SSGLLR 60
          M+GGEA STRVVIIDTKYVHTDAKSFKTVVQKLTG+DP AA  E+ R  GGG  SS L R
Sbjct: 1  MAGGEAPSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTR 60

Query: 61 DSSFKEFQRVLREMPR 76
          DSSFKEFQRVLREM +
Sbjct: 61 DSSFKEFQRVLREMAK 76

[Close]

BLAST of Lcy11g006570 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 10 RVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAA--------------------VVEENRHV 69
          +VV I+T+YV TDA+SFKTVVQ+LTG++ + A                    + E+ R +
Sbjct: 13 KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 70 GGGRSSGLLRDSSFKEFQRVLREMPRID 78
           GG   G  R  +  EF R+ +EMP ++
Sbjct: 73 HGGGGGG-GRMGTTTEFDRLFKEMPHME 99

[Close]

BLAST of Lcy11g006570 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.8e-06
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 2  SGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGRDPMAAVVEENRHVGGGRSSGLLRDS 61
          +G  +   +VV I+T+YV TDA+SFKT+VQ+LTG++   AVV +  +   G+  G  +DS
Sbjct: 3  AGVRSEPMKVVFINTQYVQTDARSFKTIVQELTGKN---AVVADGPYEFSGQGYG-GKDS 62

Query: 62 SFK---------------EFQRVLREMPRI 77
          S +               EF    REMP +
Sbjct: 63 SQRFCGVGKEAERGVETTEFDSFFREMPPV 88

The following BLAST results are available for this feature:

BLAST of Lcy11g006570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI5	2.7e-06	36.36	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
Q1G3U8	6.7e-05	36.67	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of Lcy11g006570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVF7	2.8e-22	78.48	VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4...	[more]
A0A6J1CNV7	4.8e-22	78.95	VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A5A7VBD1	5.3e-21	80.56	VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KXJ0	6.9e-21	79.17	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=...	[more]
A0A3Q0EY25	1.0e-11	61.97	VQ motif-containing protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760...	[more]

BLAST of Lcy11g006570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889427.1	1.4e-23	86.11	VQ motif-containing protein 1-like [Benincasa hispida]	[more]
KAG6600481.1	1.5e-22	79.75	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577059.1	3.4e-22	83.33	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022942030.1	5.8e-22	78.48	VQ motif-containing protein 1 [Cucurbita moschata]	[more]
XP_022142787.1	9.9e-22	78.95	VQ motif-containing protein 10-like [Momordica charantia]	[more]

BLAST of Lcy11g006570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78410.1	1.9e-07	36.36	VQ motif-containing protein	[more]
AT1G17147.1	4.8e-06	36.67	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 13..37 e-value: 7.1E-11 score: 41.4
IPR039608	VQ motif-containing protein 1/10	PANTHER	PTHR34777	VQ MOTIF-CONTAINING PROTEIN 10	coord: 5..77
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 10	coord: 5..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g006570.1	Lcy11g006570.1	mRNA