Lcy11g005900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g005900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	50S ribosomal protein L33-like
Location	Chr11: 5855672 .. 5857108 (-)
RNA-Seq Expression	Lcy11g005900
Synteny	Lcy11g005900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCATTCTCATGGAAGATGGCGACAGCAATTCAAAGGCTTTGTTTGGATTTGGCGCTTTCTTGTGGAAGAAGGAATCGATTTCTCTGCAATTCGTCTTCTTCAACTCCTTCAAACTTCCTCACTTTCAAGTCTCTCTCCTTCTCTGCTACCCTCTCGCAGAGCGTCCTTCCCAATCTCAAAGGTAATTGCGAACATTTCATCCAAATTCATCATCACAAATCCATTCATCAGACTTCTGTTCTCGTCAATTGTACGAATATTATCCCAATTCGAGTTCCCTTTCCCGTTACTTGATCAAAATCTCAATCGAGAGACTAGAAAGAACGGGAATTAAGACTGAGTATCATAATCCAGAGTCTCTACTGGGAGAATTTTGTTTGGTGGGGTTTATTTACAGTTTTTCTTACCAAACAAACAGAAGGCGGAGAAATTTAAGATTTGGAGGTCTCTTGAAATTTTCAGGATCGTTGTCACAGAGCGCTCGGGAGAGATCAATCCGTTATGGATCTGTGATTTGCATGGCCAAAAGATATGCTCCTAACACTACAAAGAGAAAGGTACAGAACTTGTAGCTAATTGTTCCTTTTGTGGATAGATTGAATCTGTATCTAGTTTTAGCTTCGAAATTGTGTGGATTATGGTACAAATTTGCAAATCAAGAGGACAGTAATGCATTTTATATGTTTTGTTTATGTGTCTATATTGACCCTTTGATGTGAATTTGTATGATATCCTTCAAAATTACCATATTCTGCATGTTATCAGTTCGGTATGGTATAGAAAACATATACTTATCTTATTGAATTTTATGTTTGATATGAGATGATAGAGAAATCTGATAAACCTTCTGTTGGGATTGTTCTGCATCGAAGTTTGGTATACTGTTCTAACTTTATAGTCTGTACTGTACAGTGCAAAAGAGAACCATCCAATTCCAAGGCATTGGAAATAATATTGTGTAATTTGCTTGTTAACCGTTGATTTGATGATGTAACTAAGTTGTCAATTGCATTCAAATGCAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAGAGATTTCAAAATAGTCCGACTTTCCTCAGCAGCTGGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAAACGTCATGTTCTGTTCACTGAAGTCAAGTGAGTCAGGTTGTCCTCTGTGCTATATATAAATAGATAGATGGATATGTAAAACACTGCTCACACTTAGAATCCAAAGGTGAAAGTTAGAGGAAATATGTTACTGAATGGCTTGCGTACATTGCCATATTTTGGAACATATGATCGGAAGGAAGTATAAAAGAAAGAAACTTTTGGAGTCCGTATTAAGAAGTAATTGAT

mRNA sequence

GTTCATTCTCATGGAAGATGGCGACAGCAATTCAAAGGCTTTGTTTGGATTTGGCGCTTTCTTGTGGAAGAAGGAATCGATTTCTCTGCAATTCGTCTTCTTCAACTCCTTCAAACTTCCTCACTTTCAAGTCTCTCTCCTTCTCTGCTACCCTCTCGCAGAGCGTCCTTCCCAATCTCAAAGGATCGTTGTCACAGAGCGCTCGGGAGAGATCAATCCGTTATGGATCTGTGATTTGCATGGCCAAAAGATATGCTCCTAACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAGAGATTTCAAAATAGTCCGACTTTCCTCAGCAGCTGGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAAACGTCATGTTCTGTTCACTGAAGTCAAGTGAGTCAGGTTGTCCTCTGTGCTATATATAAATAGATAGATGGATATGTAAAACACTGCTCACACTTAGAATCCAAAGGTGAAAGTTAGAGGAAATATGTTACTGAATGGCTTGCGTACATTGCCATATTTTGGAACATATGATCGGAAGGAAGTATAAAAGAAAGAAACTTTTGGAGTCCGTATTAAGAAGTAATTGAT

Coding sequence (CDS)

ATGGCGACAGCAATTCAAAGGCTTTGTTTGGATTTGGCGCTTTCTTGTGGAAGAAGGAATCGATTTCTCTGCAATTCGTCTTCTTCAACTCCTTCAAACTTCCTCACTTTCAAGTCTCTCTCCTTCTCTGCTACCCTCTCGCAGAGCGTCCTTCCCAATCTCAAAGGATCGTTGTCACAGAGCGCTCGGGAGAGATCAATCCGTTATGGATCTGTGATTTGCATGGCCAAAAGATATGCTCCTAACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAGAGATTTCAAAATAGTCCGACTTTCCTCAGCAGCTGGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAAACGTCATGTTCTGTTCACTGAAGTCAAGTGA

Protein sequence

MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSAAGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

Homology

[Close]

BLAST of Lcy11g005900 vs. ExPASy Swiss-Prot
Match: Q5FFJ4 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rpmG PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 25/46 (54.35%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 114 IVRLSSAAGTGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK 159
           +V+L+S+AGTG+FY KK++ +K+ +K+  +KYDP+A++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Lcy11g005900 vs. ExPASy Swiss-Prot
Match: Q5HBV6 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rpmG PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 25/46 (54.35%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 114 IVRLSSAAGTGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK 159
           +V+L+S+AGTG+FY KK++ +K+ +K+  +KYDP+A++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Lcy11g005900 vs. ExPASy Swiss-Prot
Match: B6IN38 (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 26/51 (50.98%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 109 KRDFKIVRLSSAAGTGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK 159
           K++  +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A++HV+F E K
Sbjct: 3   KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of Lcy11g005900 vs. ExPASy Swiss-Prot
Match: Q2W1A2 (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-07
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 114 IVRLSSAAGTGFFY-AKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           +++L S AGTGFFY AKK  RK  +K+E +KYDP+ ++HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of Lcy11g005900 vs. ExPASy Swiss-Prot
Match: Q9RSS4 (50S ribosomal protein L33 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=rpmG PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.5e-07
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 114 IVRLSSAAGTGFFYAKKKSRKMAD-KIELQKYDPIAKRHVLFTEVK 159
           IV++ S+AGTGF+Y   K+R+    K+EL+KYDP+AK+HV+F E K
Sbjct: 9   IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 54

[Close]

BLAST of Lcy11g005900 vs. ExPASy TrEMBL
Match: A0A6J1E4T6 (uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.1e-63
Identity = 130/158 (82.28%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+R CLD ALSCG RNRFLC+S+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Lcy11g005900 vs. ExPASy TrEMBL
Match: A0A6J1E445 (uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 129/157 (82.17%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+R CLD ALSCG RNRFLC+S+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEV 158
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEV
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV 157

[Close]

BLAST of Lcy11g005900 vs. ExPASy TrEMBL
Match: A0A6J1J566 (uncharacterized protein LOC111482725 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482725 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 127/158 (80.38%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+RLCL  AL CG RNRFLC+S+SSTP +F++FK LSFSA LS  V+PN+K SLSQ
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSVICMA+RYAPNTTKRKRLSRKRGGDP+KK+KTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTE K
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of Lcy11g005900 vs. ExPASy TrEMBL
Match: A0A6J1J250 (uncharacterized protein LOC111482725 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482725 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 127/158 (80.38%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+RLCL  AL CG RNRFLC+S+SSTP +F++FK LSFSA LS  V+PN+K SLSQ
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSVICMA+RYAPNTTKRKRLSRKRGGDP+KK+KTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTE K
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of Lcy11g005900 vs. ExPASy TrEMBL
Match: A0A5A7UZ21 (50S ribosomal protein L33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001000 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.0e-60
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLS--QSVLPNLKGSL 60
           MAT IQR CLDL LSCG+RN+FL NSSSS PSNF+TF S SF ATLS   S +PN+KG L
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLS 120
            Q A ERSIRYGSVICMAKRYAP+TTKRKRLSRKRGGDP KKKKTRRKGG++DFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 SAAGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           S A TGFFYAKKKSRKMADKIE+QKYDPIA RHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of Lcy11g005900 vs. NCBI nr
Match: KAG7015026.1 (rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+RLCLD ALSCG RNRFLCNS+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Lcy11g005900 vs. NCBI nr
Match: KAG6577004.1 (hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.3 bits (656), Expect = 8.6e-65
Identity = 134/158 (84.81%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+RLCLD ALSCG RNRFLCNS+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSI YGSVICMAKRYAPNTTKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIPYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Lcy11g005900 vs. NCBI nr
Match: XP_023552499.1 (uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63
Identity = 131/158 (82.91%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+RLC D ALSCG RNRFLC+S+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSV CMAKRYAPNTTKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVTCMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Lcy11g005900 vs. NCBI nr
Match: XP_022922690.1 (uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata] >XP_022922691.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 130/158 (82.28%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+R CLD ALSCG RNRFLC+S+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Lcy11g005900 vs. NCBI nr
Match: XP_022922689.1 (uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 3.1e-62
Identity = 129/157 (82.17%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MATAIQRLCLDLALSCGRRNRFLCNSSSSTPSNFLTFKSLSFSATLSQSVLPNLKGSLSQ 60
           MA  I+R CLD ALSCG RNRFLC+S+SSTP +F++FK LSFSA LS SV+PN+K SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPDKKKKTRRKGGKRDFKIVRLSSA 120
           SARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDP+KKKKTRRKGG++DFKI+RLSS 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEV 158
           AGTGFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEV
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV 157

[Close]

BLAST of Lcy11g005900 vs. TAIR 10
Match: AT3G06320.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-10
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 98  DKKKKTRRKGGKRDFKIVRLSSAAGTGFFYAKKKSRK-MADKIELQKYDPIAKRHVLFTE 157
           DK+KKT        F  +RL SAAGTGFFY K+KS K + +K+E +KYDP   RHVLFTE
Sbjct: 3   DKRKKT--------FMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTE 56

Query: 158 VK 159
            K
Sbjct: 63  QK 56

[Close]

BLAST of Lcy11g005900 vs. TAIR 10
Match: AT5G18790.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-10
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 98  DKKKKTRRKGGKRDFKIVRLSSAAGTGFFYAKKKSRK-MADKIELQKYDPIAKRHVLFTE 157
           DK+KKT        F  +RL SAAGTGFFY K+KS K + +K+E +KYDP   RHVLFTE
Sbjct: 3   DKRKKT--------FMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTE 56

Query: 158 VK 159
            K
Sbjct: 63  QK 56

The following BLAST results are available for this feature:

BLAST of Lcy11g005900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5FFJ4	4.5e-08	54.35	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]
Q5HBV6	4.5e-08	54.35	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494...	[more]
B6IN38	1.3e-07	50.98	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q2W1A2	5.0e-07	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
Q9RSS4	8.5e-07	54.35	50S ribosomal protein L33 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20...	[more]

BLAST of Lcy11g005900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4T6	5.1e-63	82.28	uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E445	1.5e-62	82.17	uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J566	2.1e-61	80.38	uncharacterized protein LOC111482725 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J250	2.1e-61	80.38	uncharacterized protein LOC111482725 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UZ21	4.0e-60	81.88	50S ribosomal protein L33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Lcy11g005900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015026.1	1.3e-65	85.44	rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577004.1	8.6e-65	84.81	hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023552499.1	2.1e-63	82.91	uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]	[more]
XP_022922690.1	1.1e-62	82.28	uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata] >XP_0229226...	[more]
XP_022922689.1	3.1e-62	82.17	uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata]	[more]

BLAST of Lcy11g005900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06320.1	3.8e-10	56.45	Ribosomal protein L33 family protein	[more]
AT5G18790.1	3.8e-10	56.45	Ribosomal protein L33 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 109..158 e-value: 4.6E-13 score: 47.3
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 114..158 e-value: 4.8E-9 score: 36.6
IPR038584	Ribosomal protein L33 superfamily	GENE3D	2.20.28.120	Ribosomal protein L33	coord: 99..157 e-value: 1.4E-17 score: 65.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..109
None	No IPR available	PANTHER	PTHR15238:SF1	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 108..158
None	No IPR available	PANTHER	PTHR15238	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 108..158
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 127..145
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 112..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g005900.1	Lcy11g005900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome