Lcy11g005840 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g005840
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	S4 RNA-binding domain-containing protein
Location	Chr11: 5796048 .. 5801137 (+)
RNA-Seq Expression	Lcy11g005840
Synteny	Lcy11g005840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGCTCACTGACAATGGCCGCAACGAGCATTGGAACTCTGTGGTGTCTAAGAAGAGCAGCCCAAGCTTCGACTTTCTGCAGTCCCTTTGCCGCTAACCTCAACAAGCTCTCCTTCCACGAGGCTCGCTTTCCCTCTGCTTCATCTTCTCCTCTTGGCTCCTCAGGTCTCGATTCGCTTTTCCTCCGTTGATTGTTCTTGAGCAATGCAAAATCCTCTCAGTGTTATAGAAAATTATGAATTATTATTGTTTAGTGGGCGGATTTGTCCTTGAATTGCATTGTGATTGCTTGCTAAGATCAAAATTATCGAACAATTAGTGCAGGAGATAATAAGCTTTGAATGGGGTACCAATTGGAAGTAATCTTTTTCCATTTCGAATGAATGACATAAAGGGTAACGGCGAGTGTGCTTGTTTCTATAGAAAGGATGGTAGCTAATTGATTAGGATATACGCCTGAGGACTTGAGGAGTATTCAGTCGAAGTGCTTTTGCTTGTGCAGTTATATTTTTCCTTTGGGGATGTCATTCAATTGTGAAAGACAACTTTAGCTTAATATTGAGCTTGCAGTTTCAGGTATCCTTAGGGGTTGCCTGTTGGGTTTCAAGCCTCCACTCTTTGCCTCCGGGTTGAAAACTTAATAACTTAATATCCCTGTTGTCTCTTGTAGCCTGCGTGGGACATTCGATACCTTAAACATGACAAATTATGAGTATCATAATCTTGGCTTGGTCAAAAGTACTTCCTTCTAAACTATGCGTCCACCAGCTTGTCTCCTACACCTCATCAAATCCTTAAATTATGTCACTTTCATTATAACTCTAGAAATGAAACATATTGTACATGGGATAAAGGAATGTTTTACTTCATCTTGACACAATCCTGAATGTTCACCCAAGTAATTCAATATTTGCATGTTAATAATTGTCCCAATGCCATTTCAGGAACATGCCAATTACTACAAGCTGTAAAGGGGGACATTGATGTTTTACTTAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTATTGAATCCTGATAAACTTTTACTGACATGTTAGTATGTAAGACTAGAGCCTTAACCATCTTGTTACACCATATTTTCTTTTTCCTCACCCTTTTTTATCCATGCTGCGAAGACTGGATAAGGGTGGATCTACAAATTTCTAAAGAATTAAAGGGAAAAAGGCAATCCTTTTTCTTCCCCTTCTATCTTGGTTTTGACTTGTGAGGGATGATTCTGGTTCTTCACTCCTTTTTGGTTTCATCTAGGCCAAACGTTCATTATCAAGACGAGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTTTACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGTGAAAATATAATGGTTTTGCTTTGTTGTTTCAGTTGGGGATTGAGTTTATGAATCTAAGATCTATTGCTGATACCACACTTCTTTCAAGTTGACAAAATGTTTAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACGTAATTTCGGCATTGAGGTATCATTATTTGATCTTCCACATTAGTCCCCCCCCCTTTTTATAGGAAACAAAAATCATCCATTGATACGATGAAATGGATACAAAAGCAAGTTCTATCGAATAATAATTACAAAAAACACCTCCATTGATTAGTCTATTTCATTTGAGCTCTGGTAAAATCCATTATTCTTTTGTTCTTTCTTCTTTTAATTTTTTTTCCTTCTCAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGTATTATTATATTCAGTATTAAGTATAATTACAACTGTTTTGTTCTTATTCTTACTGTACATTTGATGTCGTGCACATTGCAATTGTTGGTTTCTTTTTAATGATTAGTTTTCTTATAATGATTGTTTGAACTTGTGACTCATTAAATATTATAAATGCGTTACATTTTGGTCATCTGTGGGTTGGTTTTATCCTGAGAAAGTGTCATTCTCTTTGACATATCCCAAGAACTGATGGTGAAAATTATGTTTTGGGTTATCATGCTCTTGCCTTGATCAGAAAAGGTAGTTTTTAAATTTTATTTTTCAATCCCCAATCCCTCATGTGGAACAAAACTTTATGAAAAAAAAAATCAATTTAGATAAATGCTACAACATCTATATTCAGAAGTGGCTTTGTAAATTTTTAGGTTTTTGATAAAAAAAAATTGCGACAAGGCTATCATGGGTCAGATTTTTTTTATTCTCTTATTGCTTCCTTATTTACAGGAAGATAGGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTTGTATCATCACTGCGTAAGGTAGTGTGATTATCTTGGGTGGTTGCTTCTAATATGATGAATACATAAATTAACATGAGAATGAAAATATGTTTTACCTCTGACTGAATTTCTTGTGTACTAAACAAATTAAGATATATTTTGGTGAAGTCTGCATGGCCTAATAGCTATTCAAACTCTTTGTAAATTTGCTTCATTGATCACTTTATTCATTATGGCATTCTTAATTTCAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGACAGCTCTTGATTACGAACCACCGAAGTATGAAGTTATATCAGTAATATTTCATATTGGTTTCCATGTTGATTTTTATGTAGTATTTTCTTATTTCATTTGCAGGACCAAGACATTTAAAACCATAGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTGATCAGGTACAATGGCTTCTACTGACCTATTAAAATTTCACATTGTGATTATTTCTTTCTAGTATAGAATGAGTCAGTTATCTATTTTTGTTCACAACAAAAATAATGATATTTTTCCTTCAGTTTAATCATCTAATTATCTCAAATGAATAATTTGAAGAACTATTTTCTAAGTTCCAATCCCTAAAAGTAAAGGAATAATTTATGGCAAAGTTTTTGTGTTGCTGAATCCTATGCAATAGTGCTTCTCTTCTTTCACCTATTTTACTAGTGGAATAGAGTTTGACTTAATCCATAAGTTTACACCTTTTGCTCAATACTTATTAAAGCATCCATTGATTGGGGATACCCAACAAACTTTTACAATGTATAAGTTTGCTCTTATCCTTTATTAATTTGCCGGTTTGACCTTAATTAATCTGAAATTTTAGGCACCATTTTGAAGTGTTTATAGGTAGTTAAACTGTGCCATCATATGGGGTAATGAATGATAATAGACAACTTTCTCACAGTTTCTGGGGAATGGGGCGTTGCAATGTCATATCTCCTATTTCTTATGTGAAACTAAGTATATGAACCTGAAATTGTTACATGAGCAGCAGTGGTGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGGTGAGATTTTCAATTCAATCAAAACGAAAACTAGTTGCACTAAGTTCCTATCTTTTCATTCTTAGCATTTCTGATTTCTGGCTATTTTCCTCCCATTCAGATTGGAGAAATAAATTCTACAAAAAAGGGAAAATTTGCTATTGAGCTTATCAGGTATGTGTGAGCTCTGGTGATATTGGAATCTCCCTCGGGGGTGAACATCAGGACTGCTCCCTTAGGAACAATGAAAGTAAGTCATTGTTCAACATGACATTCATCCAGTTGTATATGTTAAAATCTGAACATTCATTCATCCGTTAAAAAATTTCATTTGGAAAACTGTCTCTCAACATTTCAATGCCAGGGATTATTAGTTCTTTTGTTCTTGGGATGTGTAATTTTTTTTTCCTGGAATGAATTCTAAACTTCGATGGAGGGAATGTAAATACAAAGTTATAGCATCACATTAACCATTTGTATATTCAATGGTCTGTCTTATTTCAATCCCATAATATGTGGTCATTGATGTGTATTGGTCTGTTGTGTTAGTTGGTCTACGAGTTTCGATTTGTTATGTTGCTCGCTGTTGGTTGACTGGCCAAGTATTTAAGTCAGTTTTCTTTTCAATAAGATTGATTCTATTTTTTCCCCTTATTTTCACGTGCTCACAGTCAATATGATTGACATATATTTTTAAAAACTTTTGAACCCTCAAGTGGTTTAAACTTGGATTCAATGGGTGATTTGAATGTAGTCTTCAAGGAAGACCCATCACCATATGAACAAAACTGAAATTTAATGCTAAAATGGGCAGAGTATCTGTTATTTGCTTTACTTACAATACTTCAAAAGTGGAAAACTGGCATTTTGAACTGAGTTTTATTACATAGGCTTGACCAGGACAAGATTAAGTACAACTGTTCTGGTAAAAGCAAAAAAGATATTGCTTCAGTTTAAACTTAAAAAAACAATGGCAGAGAGGGAAAAAAGAGGGGAAACTTGTCAAGCTATGATTTTTATTGATCATTTTCAGGCTTTTTAGAATGTAATTACAAAATGTAGTCTCTCATTTCAGATTTCAGAGAAGGAATTGATTGTCTGGAACCCATGATCATCAGGTAGTGAGCCATTTCCTGGTCGGATTGAGATTGCCACCTGCAGCCCTGAAACGTCGTCGATTGTGTTCGAAGAAGTATGAAATTAGTAAATCTGCATTACGATTAACTTAGTAATTCTTTTGAAACTTCATATGATAGTTTTCACAATAACTTTTCAGCCATTCCAATGGTATAGCACGAATGTATTTTACTCTTTTTTCTTCCATAAATTAACAACAAACAATAGCTAAAAGGATAGACTCATTACCTGCTGCTTTTGCTGCCACAGCTTCCTGATACACATCTGTGATGAACAATATTTCGGATGGTGTATCAACTCCAACAGACTCAGAAATCTCAACGTAACTGCTTATTTCTCTTTTGTTAC

mRNA sequence

GCTGCTCACTGACAATGGCCGCAACGAGCATTGGAACTCTGTGGTGTCTAAGAAGAGCAGCCCAAGCTTCGACTTTCTGCAGTCCCTTTGCCGCTAACCTCAACAAGCTCTCCTTCCACGAGGCTCGCTTTCCCTCTGCTTCATCTTCTCCTCTTGGCTCCTCAGGAACATGCCAATTACTACAAGCTGTAAAGGGGGACATTGATGTTTTACTTAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTTTACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACGTAATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGATAGGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTTGTATCATCACTGCGTAAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGACAGCTCTTGATTACGAACCACCGAAGACCAAGACATTTAAAACCATAGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTGATCAGCAGTGGTGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACAAAAAAGGGAAAATTTGCTATTGAGCTTATCAGGTATGTGTGAGCTCTGGTGATATTGGAATCTCCCTCGGGGGTGAACATCAGGACTGCTCCCTTAGGAACAATGAAAATTTCAGAGAAGGAATTGATTGTCTGGAACCCATGATCATCAGGTAGTGAGCCATTTCCTGGTCGGATTGAGATTGCCACCTGCAGCCCTGAAACGTCGTCGATTGTGTTCGAAGAAGTATGAAATTAGTAAATCTGCATTACGATTAACTTAGTAATTCTTTTGAAACTTCATATGATAGTTTTCACAATAACTTTTCAGCCATTCCAATGGTATAGCACGAATGTATTTTACTCTTTTTTCTTCCATAAATTAACAACAAACAATAGCTAAAAGGATAGACTCATTACCTGCTGCTTTTGCTGCCACAGCTTCCTGATACACATCTGTGATGAACAATATTTCGGATGGTGTATCAACTCCAACAGACTCAGAAATCTCAACGTAACTGCTTATTTCTCTTTTGTTAC

Coding sequence (CDS)

ATGGCCGCAACGAGCATTGGAACTCTGTGGTGTCTAAGAAGAGCAGCCCAAGCTTCGACTTTCTGCAGTCCCTTTGCCGCTAACCTCAACAAGCTCTCCTTCCACGAGGCTCGCTTTCCCTCTGCTTCATCTTCTCCTCTTGGCTCCTCAGGAACATGCCAATTACTACAAGCTGTAAAGGGGGACATTGATGTTTTACTTAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTTTACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACGTAATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGATAGGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTTGTATCATCACTGCGTAAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGACAGCTCTTGATTACGAACCACCGAAGACCAAGACATTTAAAACCATAGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTGATCAGCAGTGGTGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACAAAAAAGGGAAAATTTGCTATTGAGCTTATCAGGTATGTGTGA

Protein sequence

MAATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAIELIRYV

Homology

[Close]

BLAST of Lcy11g005840 vs. ExPASy Swiss-Prot
Match: P71020 (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmH PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-18
Identity = 67/226 (29.65%), Postives = 115/226 (50.88%), Query Frame = 0


Query: 98  TNFLTPPVVKESML--ALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VISAL 157
           T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A 
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILFPEYITPEESDFELQAF 94

Query: 158 SITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQEDRGAQVVIVPELVDFLVSSLRKV 217
           ++     F    H   LG+++G G+ R+K GDI+  E    Q+++  +  DF+ + L + 
Sbjct: 95  NVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSE-TAVQLIVSADTADFVAAQLTQA 154

Query: 218 GNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRV 277
           G   VS  +I L+ L+      +      +SLR+DA+ ++  + SR K   L+ +G V+V
Sbjct: 155 GKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKV 214

Query: 278 NWTPITKNGTILKTGDIVSVSGKGRLKIGEI-NSTKKGKFAIELIR 319
           NW  +     I+  GD++S+ G GR  + +I   TKK K+ +   R
Sbjct: 215 NWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255

[Close]

BLAST of Lcy11g005840 vs. ExPASy TrEMBL
Match: A0A6J1CP18 (uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012786 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 3.6e-156
Identity = 289/320 (90.31%), Postives = 303/320 (94.69%), Query Frame = 0


Query: 1   MAATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVK 60
           MAATSIG LW LRRAAQAS+F  P A N   LSFH+ARFP + SSP GSSG CQL+QAVK
Sbjct: 1   MAATSIGALWSLRRAAQASSFRIPLALN---LSFHQARFPPSPSSPPGSSGICQLVQAVK 60

Query: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVK 120
           GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180

Query: 181 EKLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT 240
           EKLGDIILQ + GAQVV+VPELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF T
Sbjct: 181 EKLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNT 240

Query: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Sbjct: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFAIELIRYV 321
           IGEINSTKKGKF++ELIRYV
Sbjct: 301 IGEINSTKKGKFSVELIRYV 317

[Close]

BLAST of Lcy11g005840 vs. ExPASy TrEMBL
Match: A0A6J1J103 (uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480897 PE=4 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 4.0e-155
Identity = 286/319 (89.66%), Postives = 302/319 (94.67%), Query Frame = 0


Query: 2   AATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKG 61
           A  SIG LW LRRAAQ+S+  +P A NL+K+SFHEARFP++ SSPLGSSG CQL+QAVKG
Sbjct: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQAVKG 63

Query: 62  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKA 121
           DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA++KLADVKA
Sbjct: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADVKA 123

Query: 122 IAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIARE 181
           IAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIARE 183

Query: 182 KLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTI 241
           KLGDIILQE++GAQVVIVPELVDFLVSSL KVGNVTVSCTRIPLT LDYEPPKTKTFKTI
Sbjct: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243

Query: 242 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 301
           EASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 244 EASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303

Query: 302 GEINSTKKGKFAIELIRYV 321
           GEIN TKKGKFA+ELIRYV
Sbjct: 304 GEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Lcy11g005840 vs. ExPASy TrEMBL
Match: A0A0A0LC56 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 5.2e-155
Identity = 289/318 (90.88%), Postives = 302/318 (94.97%), Query Frame = 0


Query: 3   ATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKGD 62
           ATSI  LW LRRAAQ S+F  P A NLN+L F+EARFP   SSPLG+SG CQL+QAVKGD
Sbjct: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64

Query: 63  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKAI 122
           IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVKAI
Sbjct: 65  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124

Query: 123 AQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182
           AQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184

Query: 183 LGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIE 242
           LGDI+LQE+ GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIE
Sbjct: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244

Query: 243 ASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG 302
           ASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIG
Sbjct: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG 304

Query: 303 EINSTKKGKFAIELIRYV 321
           EINSTKKGKFA+ELIRYV
Sbjct: 305 EINSTKKGKFAVELIRYV 319

[Close]

BLAST of Lcy11g005840 vs. ExPASy TrEMBL
Match: A0A6J1FU11 (uncharacterized protein LOC111446880 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446880 PE=4 SV=1)

HSP 1 Score: 556.2 bits (1432), Expect = 8.8e-155
Identity = 286/319 (89.66%), Postives = 301/319 (94.36%), Query Frame = 0


Query: 2   AATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKG 61
           A  SIG LW LRRAA++S+F +P A NL K+SFHEARFPS+ SSPLG+SG CQL+QAVKG
Sbjct: 4   ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63

Query: 62  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKA 121
           DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVKA
Sbjct: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123

Query: 122 IAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIARE 181
           IAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF F  C+HGDFLG+ILGTGIARE
Sbjct: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIARE 183

Query: 182 KLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTI 241
           KLGDIILQE++GAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTI
Sbjct: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243

Query: 242 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 301
           EASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303

Query: 302 GEINSTKKGKFAIELIRYV 321
           GEIN TKKGKFAIELI+YV
Sbjct: 304 GEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Lcy11g005840 vs. ExPASy TrEMBL
Match: A0A1S3C3I2 (putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 2.0e-154
Identity = 286/317 (90.22%), Postives = 300/317 (94.64%), Query Frame = 0


Query: 4   TSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKGDI 63
           T+IG LW LR A+Q S+F  P   NLN+L FHE RFP   SSPLG+SG CQL+QAVKGDI
Sbjct: 6   TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFP---SSPLGTSGICQLVQAVKGDI 65

Query: 64  DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKAIA 123
           DVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVKAIA
Sbjct: 66  DVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 125

Query: 124 QGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 183
           QGGYPEAERCRISVGH+DELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREKL
Sbjct: 126 QGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 185

Query: 184 GDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEA 243
           GDII+QE+ GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEA
Sbjct: 186 GDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEA 245

Query: 244 SLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE 303
           SLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE
Sbjct: 246 SLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE 305

Query: 304 INSTKKGKFAIELIRYV 321
           INSTKKGKFA+ELIRYV
Sbjct: 306 INSTKKGKFAVELIRYV 319

[Close]

BLAST of Lcy11g005840 vs. NCBI nr
Match: XP_038899605.1 (putative RNA-binding protein YlmH [Benincasa hispida])

HSP 1 Score: 576.6 bits (1485), Expect = 1.3e-160
Identity = 296/320 (92.50%), Postives = 308/320 (96.25%), Query Frame = 0


Query: 1   MAATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVK 60
           MAATSIG  W LRRAAQ+S+F SP A NLNKLSFHEARFPS+ SSPLGSSG CQL+QAVK
Sbjct: 1   MAATSIGARWSLRRAAQSSSFRSPLAVNLNKLSFHEARFPSSPSSPLGSSGICQLVQAVK 60

Query: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVK 120
           GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLHTNFLTPPVVKES+LALQKLADVK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRVVLHTNFLTPPVVKESILALQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGHADEL SDPD++SALSITGNF FHPCSHGDFLG+ILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHADELLSDPDIVSALSITGNFMFHPCSHGDFLGAILGTGIAR 180

Query: 181 EKLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT 240
           EKLGDIILQE++GAQVV+VPELVDFL SSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT
Sbjct: 181 EKLGDIILQEEKGAQVVVVPELVDFLASSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT 240

Query: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
Sbjct: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFAIELIRYV 321
           IGEINSTKKGKFA+ELIRYV
Sbjct: 301 IGEINSTKKGKFAVELIRYV 320

[Close]

BLAST of Lcy11g005840 vs. NCBI nr
Match: XP_022142743.1 (uncharacterized protein LOC111012786 isoform X1 [Momordica charantia])

HSP 1 Score: 560.8 bits (1444), Expect = 7.4e-156
Identity = 289/320 (90.31%), Postives = 303/320 (94.69%), Query Frame = 0


Query: 1   MAATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVK 60
           MAATSIG LW LRRAAQAS+F  P A N   LSFH+ARFP + SSP GSSG CQL+QAVK
Sbjct: 1   MAATSIGALWSLRRAAQASSFRIPLALN---LSFHQARFPPSPSSPPGSSGICQLVQAVK 60

Query: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVK 120
           GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180

Query: 181 EKLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT 240
           EKLGDIILQ + GAQVV+VPELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF T
Sbjct: 181 EKLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNT 240

Query: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Sbjct: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFAIELIRYV 321
           IGEINSTKKGKF++ELIRYV
Sbjct: 301 IGEINSTKKGKFSVELIRYV 317

[Close]

BLAST of Lcy11g005840 vs. NCBI nr
Match: KAG6600381.1 (hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031043.1 ylmH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 560.5 bits (1443), Expect = 9.6e-156
Identity = 288/319 (90.28%), Postives = 302/319 (94.67%), Query Frame = 0


Query: 2   AATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKG 61
           A  SIG LW LRRAAQ+S+F +P A NL K+SFHEARFPS+ SSPLG+SG CQL+QAVKG
Sbjct: 4   ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63

Query: 62  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKA 121
           DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVKA
Sbjct: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123

Query: 122 IAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIARE 181
           IAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183

Query: 182 KLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTI 241
           KLGDIILQE++GAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTI
Sbjct: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243

Query: 242 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 301
           EASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303

Query: 302 GEINSTKKGKFAIELIRYV 321
           GEIN TKKGKFAIELI+YV
Sbjct: 304 GEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Lcy11g005840 vs. NCBI nr
Match: XP_022981895.1 (uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima])

HSP 1 Score: 557.4 bits (1435), Expect = 8.2e-155
Identity = 286/319 (89.66%), Postives = 302/319 (94.67%), Query Frame = 0


Query: 2   AATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKG 61
           A  SIG LW LRRAAQ+S+  +P A NL+K+SFHEARFP++ SSPLGSSG CQL+QAVKG
Sbjct: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQAVKG 63

Query: 62  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKA 121
           DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA++KLADVKA
Sbjct: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADVKA 123

Query: 122 IAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIARE 181
           IAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIARE 183

Query: 182 KLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTI 241
           KLGDIILQE++GAQVVIVPELVDFLVSSL KVGNVTVSCTRIPLT LDYEPPKTKTFKTI
Sbjct: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243

Query: 242 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 301
           EASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 244 EASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303

Query: 302 GEINSTKKGKFAIELIRYV 321
           GEIN TKKGKFA+ELIRYV
Sbjct: 304 GEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Lcy11g005840 vs. NCBI nr
Match: XP_004146247.1 (uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharacterized protein LOC101221944 [Cucumis sativus] >KGN57626.1 hypothetical protein Csa_011390 [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 1.1e-154
Identity = 289/318 (90.88%), Postives = 302/318 (94.97%), Query Frame = 0


Query: 3   ATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVKGD 62
           ATSI  LW LRRAAQ S+F  P A NLN+L F+EARFP   SSPLG+SG CQL+QAVKGD
Sbjct: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64

Query: 63  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVKAI 122
           IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLA+QKLADVKAI
Sbjct: 65  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124

Query: 123 AQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182
           AQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184

Query: 183 LGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIE 242
           LGDI+LQE+ GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIE
Sbjct: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244

Query: 243 ASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG 302
           ASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIG
Sbjct: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG 304

Query: 303 EINSTKKGKFAIELIRYV 321
           EINSTKKGKFA+ELIRYV
Sbjct: 305 EINSTKKGKFAVELIRYV 319

[Close]

BLAST of Lcy11g005840 vs. TAIR 10
Match: AT1G53120.1 (RNA-binding S4 domain-containing protein )

HSP 1 Score: 419.5 bits (1077), Expect = 2.5e-117
Identity = 210/320 (65.62%), Postives = 257/320 (80.31%), Query Frame = 0


Query: 1   MAATSIGTLWCLRRAAQASTFCSPFAANLNKLSFHEARFPSASSSPLGSSGTCQLLQAVK 60
           MA TS+   W + R A  S   S       K        P++      +   C   +A+K
Sbjct: 1   MAVTSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIK 60

Query: 61  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLALQKLADVK 120
           GD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES+  L+K ADVK
Sbjct: 61  GDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
            +AQGGYPEAERCRIS+GH D LTSDPD+++ALSITGNF F PCSHGDFLG+ILGTGI+R
Sbjct: 121 IVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISR 180

Query: 181 EKLGDIILQEDRGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT 240
           EKLGDI++QE++GAQV+IVPELVDF+V++L KVGNV V+C++IPL AL+YEPP+T +FKT
Sbjct: 181 EKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKT 240

Query: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300
           +EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD+VSVSGKGRLK
Sbjct: 241 VEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFAIELIRYV 321
           IGEIN TKKGKFA+E+IRY+
Sbjct: 301 IGEINETKKGKFAVEIIRYL 320

The following BLAST results are available for this feature:

BLAST of Lcy11g005840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P71020	3.4e-18	29.65	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]

BLAST of Lcy11g005840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP18	3.6e-156	90.31	uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1J103	4.0e-155	89.66	uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LC56	5.2e-155	90.88	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233...	[more]
A0A6J1FU11	8.8e-155	89.66	uncharacterized protein LOC111446880 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3C3I2	2.0e-154	90.22	putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Lcy11g005840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899605.1	1.3e-160	92.50	putative RNA-binding protein YlmH [Benincasa hispida]	[more]
XP_022142743.1	7.4e-156	90.31	uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]	[more]
KAG6600381.1	9.6e-156	90.28	hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022981895.1	8.2e-155	89.66	uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]	[more]
XP_004146247.1	1.1e-154	90.88	uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharact...	[more]

BLAST of Lcy11g005840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53120.1	2.5e-117	65.63	RNA-binding S4 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 245..305 e-value: 4.6E-11 score: 52.8
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 249..291 e-value: 4.5E-8 score: 32.7
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 246..300 e-value: 7.93238E-11 score: 55.3334
IPR040591	YlmH, putative RNA-binding domain	PFAM	PF17774	YlmH_RBD	coord: 151..226 e-value: 9.3E-14 score: 51.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 146..228 e-value: 4.8E-22 score: 79.6
IPR017506	Photosystem II S4	TIGRFAM	TIGR03069	TIGR03069	coord: 78..318 e-value: 1.7E-95 score: 317.0
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 237..296 e-value: 1.1E-7 score: 33.2
None	No IPR available	PANTHER	PTHR32219:SF3	RNA-BINDING PROTEIN YLMH-RELATED	coord: 52..320
None	No IPR available	PANTHER	PTHR32219	RNA-BINDING PROTEIN YLMH-RELATED	coord: 52..320
None	No IPR available	PROSITE	PS50889	S4	coord: 245..305 score: 13.680749
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 150..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g005840.1	Lcy11g005840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding