Lcy11g005630 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g005630
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ferredoxin
Location	Chr11: 5505452 .. 5506517 (+)
RNA-Seq Expression	Lcy11g005630
Synteny	Lcy11g005630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAACCAGAAGGTTGAATTCGAATTTTAAAATTAATTGAACTAAATTCCAACTTTCTCCAAATCATAGGGACCAAATTTGTAACGTGGCCTCAATTATTTGTGATACTTGCCAATCAATTTATCGGTTTCCAATTATTTGCCATGGAAGATAAGGTTAGTCATACGCACATGTTCTTTGTTTCACTCTCCACATTAAAGCTACACAACCATCAAGCCCACCTCTCACCTTCACCATATCTCCATTCCATTCCCAGTACCAAAAATGGCAAGCACCACCACTGCATTTTCCAGCCTCATCACCACCACTTCCTTCCTCCCGCGCCGGCCGGTGTCGAACGTGGGCGAGCGTCTGCTCGGGCTGCAGAAGGGCGGCAGCCGGGGCGGGCGAGTGACGGCGATGGCAAAGAAGTACAAGGTCAAGCTAATAACACCAAGTGGACAGGAAGTGTTCAACTGTCCGGATGATGATTACATTCTAGATGAAGCTGAAATGGTAGGGATAGACCTTCCATACTCATGTAGAGCAGGAGCATGTTCTACTTGTGTAGGGAAACTAAAATCAGGGAAGGTGGATCAGTCAGCTGGTAGCTTCCTTGATGATGATCAGATTGCAGATGGCTGGGTTCTTACTTGTGTGGCTCTTCCCCTCTCTGATGTTGTCATTCAGACCAACATGGAGGATGAGTTAATGAAAAGTTGAGAAACAGAGAGAGTGAGTGAGTGAGTGAACAAAAAGAAGGAATTCCATCTTGTTCATCAGTCATTTTCACTTCTTTTTAGCATCTATGATATGAGAATAAAGCCAATTATGCTATCTTTAACTTAATGATTGAAATGGATCATTAAAACTTTCTCTTTCTCTCTTAAGTGTTTGTGTGTTGGGTTTCAAATCATCTTGTTCTTGTTCATCAGTCATTTGGGCACATTTACATCTCTTTTTAGCATCTAAAAAGTGAAAGTAAGCCAATGATGCTGTTGTTACACTAATGATTCAGGTAGATTGATAAATCACTCTTTCTAAGTGTATGTTGGGTTTCAATACCAAAAGTGTTTTTTGCCTTGG

mRNA sequence

ATCAAACCAGAAGGTTGAATTCGAATTTTAAAATTAATTGAACTAAATTCCAACTTTCTCCAAATCATAGGGACCAAATTTGTAACGTGGCCTCAATTATTTGTGATACTTGCCAATCAATTTATCGGTTTCCAATTATTTGCCATGGAAGATAAGGTTAGTCATACGCACATGTTCTTTGTTTCACTCTCCACATTAAAGCTACACAACCATCAAGCCCACCTCTCACCTTCACCATATCTCCATTCCATTCCCAGTACCAAAAATGGCAAGCACCACCACTGCATTTTCCAGCCTCATCACCACCACTTCCTTCCTCCCGCGCCGGCCGGTGTCGAACGTGGGCGAGCGTCTGCTCGGGCTGCAGAAGGGCGGCAGCCGGGGCGGGCGAGTGACGGCGATGGCAAAGAAGTACAAGGTCAAGCTAATAACACCAAGTGGACAGGAAGTGTTCAACTGTCCGGATGATGATTACATTCTAGATGAAGCTGAAATGGTAGGGATAGACCTTCCATACTCATGTAGAGCAGGAGCATGTTCTACTTGTGTAGGGAAACTAAAATCAGGGAAGGTGGATCAGTCAGCTGGTAGCTTCCTTGATGATGATCAGATTGCAGATGGCTGGGTTCTTACTTGTGTGGCTCTTCCCCTCTCTGATGTTGTCATTCAGACCAACATGGAGGATGAGTTAATGAAAAGTTGAGAAACAGAGAGAGTGAGTGAGTGAGTGAACAAAAAGAAGGAATTCCATCTTGTTCATCAGTCATTTTCACTTCTTTTTAGCATCTATGATATGAGAATAAAGCCAATTATGCTATCTTTAACTTAATGATTGAAATGGATCATTAAAACTTTCTCTTTCTCTCTTAAGTGTTTGTGTGTTGGGTTTCAAATCATCTTGTTCTTGTTCATCAGTCATTTGGGCACATTTACATCTCTTTTTAGCATCTAAAAAGTGAAAGTAAGCCAATGATGCTGTTGTTACACTAATGATTCAGGTAGATTGATAAATCACTCTTTCTAAGTGTATGTTGGGTTTCAATACCAAAAGTGTTTTTTGCCTTGG

Coding sequence (CDS)

ATGGCAAGCACCACCACTGCATTTTCCAGCCTCATCACCACCACTTCCTTCCTCCCGCGCCGGCCGGTGTCGAACGTGGGCGAGCGTCTGCTCGGGCTGCAGAAGGGCGGCAGCCGGGGCGGGCGAGTGACGGCGATGGCAAAGAAGTACAAGGTCAAGCTAATAACACCAAGTGGACAGGAAGTGTTCAACTGTCCGGATGATGATTACATTCTAGATGAAGCTGAAATGGTAGGGATAGACCTTCCATACTCATGTAGAGCAGGAGCATGTTCTACTTGTGTAGGGAAACTAAAATCAGGGAAGGTGGATCAGTCAGCTGGTAGCTTCCTTGATGATGATCAGATTGCAGATGGCTGGGTTCTTACTTGTGTGGCTCTTCCCCTCTCTGATGTTGTCATTCAGACCAACATGGAGGATGAGTTAATGAAAAGTTGA

Protein sequence

MASTTTAFSSLITTTSFLPRRPVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADGWVLTCVALPLSDVVIQTNMEDELMKS

Homology

[Close]

BLAST of Lcy11g005630 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-40
Identity = 87/148 (58.78%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRP------VSNVGERLLGLQKGGSRGGRVTAMAKKYKVKL 60
           MA+TT A S    +T+F P+ P       +NVG  L GL+   SR GRVTAMA  YKV L
Sbjct: 1   MAATTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASR-GRVTAMA-AYKVTL 60

Query: 61  ITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDD 120
           +TP G++   CPDD YILD AE  GIDLPYSCRAG+CS+C GK+ SG V+Q  GSFLDDD
Sbjct: 61  VTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDD 120

Query: 121 QIADGWVLTCVALPLSDVVIQTNMEDEL 143
           QI +GWVLTCVA P  DV I+T+ E+EL
Sbjct: 121 QIKEGWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of Lcy11g005630 vs. ExPASy Swiss-Prot
Match: Q43517 (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-39
Identity = 85/143 (59.44%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 7   AFSSLITTTSFLPRRP-------VSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLITPSG 66
           + S  + +TSFLPR+P       +SNVGE L GL+ G  R GR+T MA  YKVKLITP G
Sbjct: 3   SISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSG--RNGRITCMA-SYKVKLITPEG 62

Query: 67  QEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADG 126
              F CPDD YILD+AE  G DLPYSCRAG+CS+C GK+ +G VDQS G+FLD+DQ A G
Sbjct: 63  PIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAG 122

Query: 127 WVLTCVALPLSDVVIQTNMEDEL 143
           +VLTCVA P  DV I+T+ E+EL
Sbjct: 123 FVLTCVAYPKGDVTIETHKEEEL 142

[Close]

BLAST of Lcy11g005630 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-39
Identity = 82/142 (57.75%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 9   SSLITTTSFLPR-------RPVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLITPSGQE 68
           S+ + +TSF+PR       +P+ NVGE L GL+   + GG+VT MA  YKVKLITP G  
Sbjct: 5   SATMISTSFMPRKPAVTSLKPIPNVGEALFGLK--SANGGKVTCMA-SYKVKLITPDGPI 64

Query: 69  VFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADGWV 128
            F+CPD+ YILD+AE  G DLPYSCRAG+CS+C GK+  G VDQ+ G+FLDDDQ+ +GWV
Sbjct: 65  EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWV 124

Query: 129 LTCVALPLSDVVIQTNMEDELM 144
           LTCVA P SDV I+T+ E EL+
Sbjct: 125 LTCVAYPQSDVTIETHKEAELV 143

[Close]

BLAST of Lcy11g005630 vs. ExPASy Swiss-Prot
Match: P00221 (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-38
Identity = 86/148 (58.11%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRP------VSNVGERLLGLQKGGSRGGRVTAMAKKYKVKL 60
           MA+TTT    + TT    P+ P       SN G  L GL K GSRGGR+T  A  YKV L
Sbjct: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGL-KTGSRGGRMTMAA--YKVTL 60

Query: 61  ITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDD 120
           +TP+G   F CPDD YILD AE  GIDLPYSCRAG+CS+C GKLK+G ++Q   SFLDDD
Sbjct: 61  VTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDD 120

Query: 121 QIADGWVLTCVALPLSDVVIQTNMEDEL 143
           QI +GWVLTC A P+SDV I+T+ E+EL
Sbjct: 121 QIDEGWVLTCAAYPVSDVTIETHKEEEL 145

[Close]

BLAST of Lcy11g005630 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-37
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 5   TTAFSSLITTTSFLPRR---------PVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLI 64
           +TA SS I +TSFL R+         P +N  + L GL+   +RGGRVTAMA  YKVK I
Sbjct: 3   STALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMA-TYKVKFI 62

Query: 65  TPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQ 124
           TP G++   C +D Y+LD AE  G+DLPYSCRAG+CS+C GK+ SG +DQS  SFLDD+Q
Sbjct: 63  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 122

Query: 125 IADGWVLTCVALPLSDVVIQTNMEDELM 144
           +++G+VLTCVA P SDVVI+T+ E+ +M
Sbjct: 123 MSEGYVLTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of Lcy11g005630 vs. ExPASy TrEMBL
Match: A0A2P5BHJ1 (Ferredoxin OS=Trema orientale OX=63057 GN=TorRG33x02_320950 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 94/149 (63.09%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRPVS-------NVGERLLGLQKGGSRGGRVTAMAKKYKVK 60
           MA+T  A SS + +TSF+ R+P +       NVG+ L GL+   SRGGRVTAMA  YKVK
Sbjct: 1   MAATAAALSSAMVSTSFVRRQPTTTSLRALPNVGQALFGLKATPSRGGRVTAMA-AYKVK 60

Query: 61  LITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDD 120
           L+TP G+  F CPDD Y+LD+AE VGIDLPYSCRAG+CS+CVGK+  G+VDQS  SFLDD
Sbjct: 61  LLTPEGEVEFECPDDVYVLDQAEEVGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDD 120

Query: 121 DQIADGWVLTCVALPLSDVVIQTNMEDEL 143
           DQ+A GWVLTCVA P SDVVI+T+ E+EL
Sbjct: 121 DQVAGGWVLTCVAYPQSDVVIETHKEEEL 148

[Close]

BLAST of Lcy11g005630 vs. ExPASy TrEMBL
Match: A0A7J6EFC8 (Ferredoxin OS=Cannabis sativa OX=3483 GN=F8388_003320 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.4e-43
Identity = 95/150 (63.33%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRPVS-------NVGERLLGLQKG-GSRGGRVTAMAKKYKV 60
           MA+T+ A SS + +TSF+ R+P +       NVG+ L GL+   GSRGGRVTAMA  YKV
Sbjct: 1   MAATSAALSSAMVSTSFVRRQPTTTSLRALPNVGQALFGLKASTGSRGGRVTAMA-AYKV 60

Query: 61  KLITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLD 120
           KLITP G+  F CPDD Y+LD+AE +G+DLPYSCRAG+CS+CVGK+ SG VDQS  SFLD
Sbjct: 61  KLITPEGETEFECPDDVYVLDQAEEMGLDLPYSCRAGSCSSCVGKVVSGDVDQSDNSFLD 120

Query: 121 DDQIADGWVLTCVALPLSDVVIQTNMEDEL 143
           DDQI +GWVLTCVA P SDVVI+T+ E+EL
Sbjct: 121 DDQIGEGWVLTCVAYPQSDVVIETHKEEEL 149

[Close]

BLAST of Lcy11g005630 vs. ExPASy TrEMBL
Match: A0A803Q7R7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.4e-43
Identity = 95/150 (63.33%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRPVS-------NVGERLLGLQKG-GSRGGRVTAMAKKYKV 60
           MA+T+ A SS + +TSF+ R+P +       NVG+ L GL+   GSRGGRVTAMA  YKV
Sbjct: 37  MAATSAALSSAMVSTSFVRRQPTTTSLRALPNVGQALFGLKASTGSRGGRVTAMA-AYKV 96

Query: 61  KLITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLD 120
           KLITP G+  F CPDD Y+LD+AE +G+DLPYSCRAG+CS+CVGK+ SG VDQS  SFLD
Sbjct: 97  KLITPEGETEFECPDDVYVLDQAEEMGLDLPYSCRAGSCSSCVGKVVSGDVDQSDNSFLD 156

Query: 121 DDQIADGWVLTCVALPLSDVVIQTNMEDEL 143
           DDQI +GWVLTCVA P SDVVI+T+ E+EL
Sbjct: 157 DDQIGEGWVLTCVAYPQSDVVIETHKEEEL 185

[Close]

BLAST of Lcy11g005630 vs. ExPASy TrEMBL
Match: A0A6J1C4E2 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.0e-43
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPR-RPVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLITPSG 60
           M +TTTA  S IT+     R RPVSNVGE L GLQKG SR GRVTAMA  YKVKLITPSG
Sbjct: 1   MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMA-TYKVKLITPSG 60

Query: 61  QEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADG 120
           ++V +C D DYILD AE  G++LP+SCRAGACS+CVGKLKSGK+DQS  SFLD+DQI +G
Sbjct: 61  EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEG 120

Query: 121 WVLTCVALPLSDVVIQTNMEDE 142
           WVLTC+A P+SDVVI+T+  +E
Sbjct: 121 WVLTCLASPMSDVVIETHKAEE 141

[Close]

BLAST of Lcy11g005630 vs. ExPASy TrEMBL
Match: A0A6J1C815 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.6e-42
Identity = 93/147 (63.27%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 3   STTTAFSSLITTTSFLPRRP------VSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLIT 62
           +++TA S  + +TSFL ++P      VSN G+ L GL KGGSRGGRVTAMA  YKVKLIT
Sbjct: 2   ASSTALSGAMMSTSFLRKQPAGGLRSVSNFGQGLFGL-KGGSRGGRVTAMA-TYKVKLIT 61

Query: 63  PSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQI 122
           P G++ F+CPDD Y+LD+AE  G DLPYSCRAG+CS+C GK+ SGKVDQS  SFLDDDQ+
Sbjct: 62  PEGEKEFSCPDDVYVLDQAEEQGFDLPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQL 121

Query: 123 ADGWVLTCVALPLSDVVIQTNMEDELM 144
            +GWVLTCVA P SD+VI+T+ E+EL+
Sbjct: 122 EEGWVLTCVAYPQSDIVIETHKEEELV 146

[Close]

BLAST of Lcy11g005630 vs. NCBI nr
Match: PON48265.1 (Ferredoxin [2Fe-2S] [Trema orientale])

HSP 1 Score: 184.1 bits (466), Expect = 8.5e-43
Identity = 94/149 (63.09%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRPVS-------NVGERLLGLQKGGSRGGRVTAMAKKYKVK 60
           MA+T  A SS + +TSF+ R+P +       NVG+ L GL+   SRGGRVTAMA  YKVK
Sbjct: 1   MAATAAALSSAMVSTSFVRRQPTTTSLRALPNVGQALFGLKATPSRGGRVTAMA-AYKVK 60

Query: 61  LITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDD 120
           L+TP G+  F CPDD Y+LD+AE VGIDLPYSCRAG+CS+CVGK+  G+VDQS  SFLDD
Sbjct: 61  LLTPEGEVEFECPDDVYVLDQAEEVGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDD 120

Query: 121 DQIADGWVLTCVALPLSDVVIQTNMEDEL 143
           DQ+A GWVLTCVA P SDVVI+T+ E+EL
Sbjct: 121 DQVAGGWVLTCVAYPQSDVVIETHKEEEL 148

[Close]

BLAST of Lcy11g005630 vs. NCBI nr
Match: XP_030510578.1 (ferredoxin [Cannabis sativa] >KAF4352261.1 hypothetical protein G4B88_029217 [Cannabis sativa] >KAF4357173.1 hypothetical protein F8388_003320 [Cannabis sativa] >KAF4366362.1 hypothetical protein G4B88_026689 [Cannabis sativa])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 95/150 (63.33%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRPVS-------NVGERLLGLQKG-GSRGGRVTAMAKKYKV 60
           MA+T+ A SS + +TSF+ R+P +       NVG+ L GL+   GSRGGRVTAMA  YKV
Sbjct: 1   MAATSAALSSAMVSTSFVRRQPTTTSLRALPNVGQALFGLKASTGSRGGRVTAMA-AYKV 60

Query: 61  KLITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLD 120
           KLITP G+  F CPDD Y+LD+AE +G+DLPYSCRAG+CS+CVGK+ SG VDQS  SFLD
Sbjct: 61  KLITPEGETEFECPDDVYVLDQAEEMGLDLPYSCRAGSCSSCVGKVVSGDVDQSDNSFLD 120

Query: 121 DDQIADGWVLTCVALPLSDVVIQTNMEDEL 143
           DDQI +GWVLTCVA P SDVVI+T+ E+EL
Sbjct: 121 DDQIGEGWVLTCVAYPQSDVVIETHKEEEL 149

[Close]

BLAST of Lcy11g005630 vs. NCBI nr
Match: XP_022136605.1 (ferredoxin-2-like [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPR-RPVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLITPSG 60
           M +TTTA  S IT+     R RPVSNVGE L GLQKG SR GRVTAMA  YKVKLITPSG
Sbjct: 1   MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMA-TYKVKLITPSG 60

Query: 61  QEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADG 120
           ++V +C D DYILD AE  G++LP+SCRAGACS+CVGKLKSGK+DQS  SFLD+DQI +G
Sbjct: 61  EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEG 120

Query: 121 WVLTCVALPLSDVVIQTNMEDE 142
           WVLTC+A P+SDVVI+T+  +E
Sbjct: 121 WVLTCLASPMSDVVIETHKAEE 141

[Close]

BLAST of Lcy11g005630 vs. NCBI nr
Match: XP_022136608.1 (ferredoxin [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-42
Identity = 93/147 (63.27%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 3   STTTAFSSLITTTSFLPRRP------VSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLIT 62
           +++TA S  + +TSFL ++P      VSN G+ L GL KGGSRGGRVTAMA  YKVKLIT
Sbjct: 2   ASSTALSGAMMSTSFLRKQPAGGLRSVSNFGQGLFGL-KGGSRGGRVTAMA-TYKVKLIT 61

Query: 63  PSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQI 122
           P G++ F+CPDD Y+LD+AE  G DLPYSCRAG+CS+C GK+ SGKVDQS  SFLDDDQ+
Sbjct: 62  PEGEKEFSCPDDVYVLDQAEEQGFDLPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQL 121

Query: 123 ADGWVLTCVALPLSDVVIQTNMEDELM 144
            +GWVLTCVA P SD+VI+T+ E+EL+
Sbjct: 122 EEGWVLTCVAYPQSDIVIETHKEEELV 146

[Close]

BLAST of Lcy11g005630 vs. NCBI nr
Match: KAF4352271.1 (hypothetical protein G4B88_029227 [Cannabis sativa])

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-42
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRP-------VSNVGERLLGLQKGGSRGGRVTAMAKKYKVK 60
           MASTT A ++++  TSF+ R+P       V NVG+ L G  K  SRGGRVTAMA  YKVK
Sbjct: 608 MASTTAAAATMM-NTSFVRRQPTATSLRAVPNVGQSLFGGLK-ASRGGRVTAMA-TYKVK 667

Query: 61  LITPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDD 120
           LITP G +   CP+D Y+LD AE  G+DLPYSCRAGACS+CVGK+  GKVDQS  SFLDD
Sbjct: 668 LITPDGDKEIKCPEDTYVLDRAEEEGLDLPYSCRAGACSSCVGKVVEGKVDQSDNSFLDD 727

Query: 121 DQIADGWVLTCVALPLSDVVIQTNMEDEL 143
           DQIA+GWVLTCVALPLSDVVIQT+ EDEL
Sbjct: 728 DQIAEGWVLTCVALPLSDVVIQTHKEDEL 753

[Close]

BLAST of Lcy11g005630 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-38
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 5   TTAFSSLITTTSFLPRR---------PVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLI 64
           +TA SS I +TSFL R+         P +N  + L GL+   +RGGRVTAMA  YKVK I
Sbjct: 3   STALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMA-TYKVKFI 62

Query: 65  TPSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQ 124
           TP G++   C +D Y+LD AE  G+DLPYSCRAG+CS+C GK+ SG +DQS  SFLDD+Q
Sbjct: 63  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 122

Query: 125 IADGWVLTCVALPLSDVVIQTNMEDELM 144
           +++G+VLTCVA P SDVVI+T+ E+ +M
Sbjct: 123 MSEGYVLTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of Lcy11g005630 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 6.7e-38
Identity = 82/147 (55.78%), Postives = 101/147 (68.71%), Query Frame = 0


Query: 5   TTAFSSLITTTSFLPRRPV--------SNVGERLLGLQKGGSRGGRVTAMAKKYKVKLIT 64
           +TA SS I  TSF+ R P         S   + L GL+ G +RGGRVTAMA  YKVK IT
Sbjct: 3   STALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMA-TYKVKFIT 62

Query: 65  PSGQEVFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQI 124
           P G+    C DD Y+LD AE  GIDLPYSCRAG+CS+C GK+ SG VDQS  SFLDD+QI
Sbjct: 63  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 122

Query: 125 ADGWVLTCVALPLSDVVIQTNMEDELM 144
            +G+VLTC A P SDV I+T+ E++++
Sbjct: 123 GEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of Lcy11g005630 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-30
Identity = 74/143 (51.75%), Postives = 89/143 (62.24%), Query Frame = 0


Query: 1   MASTTTAFSSLITTTSFLPRRPVSNVGERLLGLQKGGSRGGRVTAMAKKYKVKLITPSGQ 60
           + S TT  + LIT  S+      +    R  GL+   + GG    M+  YKVKL+ P GQ
Sbjct: 16  LRSQTT--NKLITNKSYNLSVGSTKRVSRSFGLKCSANSGG--ATMSAVYKVKLLGPDGQ 75

Query: 61  E-VFNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADG 120
           E  F   DD YILD AE  G+DLPYSCRAGACSTC G++ SG VDQS GSFL+D  +  G
Sbjct: 76  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 135

Query: 121 WVLTCVALPLSDVVIQTNMEDEL 143
           +VLTCVA P SD VI T+ E EL
Sbjct: 136 YVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Lcy11g005630 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 32  GLQKGGSRGGRVTAMAKKYKVKLITPSGQE-VFNCPDDDYILDEAEMVGIDLPYSCRAGA 91
           GL       G+V A   + KVKLI+P G+E      +D  IL+ AE  G++LPYSCR+G 
Sbjct: 37  GLSSSRGNFGKVFAKESR-KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 96

Query: 92  CSTCVGKLKSGKVDQSAGSFLDDDQIADGWVLTCVALPLSDVVIQTNMEDELM 144
           C TC GKL SGKVDQS GSFL+++QI  G++LTC+ALPL D V+ T+ + +L+
Sbjct: 97  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDLI 148

[Close]

BLAST of Lcy11g005630 vs. TAIR 10
Match: AT1G32550.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 7.5e-13
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 63  FNCPDDDYILDEAEMVGIDLPYSCRAGACSTCVGKLKSGKVDQSAGSFLDDDQIADGWVL 122
           F  P+D YIL  AE   I LP++CR G C++C  ++KSG++ Q     +  +  + G+ L
Sbjct: 74  FEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQGYAL 133

Query: 123 TCVALPLSDVVIQTNMEDEL 143
            CV  P SD+ ++T  EDE+
Sbjct: 134 LCVGFPTSDLEVETQDEDEV 153

The following BLAST results are available for this feature:

BLAST of Lcy11g005630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04683	1.4e-40	58.78	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
Q43517	3.5e-39	59.44	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1	[more]
Q9ZTS2	3.5e-39	57.75	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
P00221	1.7e-38	58.11	Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2	[more]
O04090	3.3e-37	54.73	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]

BLAST of Lcy11g005630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BHJ1	4.1e-43	63.09	Ferredoxin OS=Trema orientale OX=63057 GN=TorRG33x02_320950 PE=3 SV=1	[more]
A0A7J6EFC8	5.4e-43	63.33	Ferredoxin OS=Cannabis sativa OX=3483 GN=F8388_003320 PE=3 SV=1	[more]
A0A803Q7R7	5.4e-43	63.33	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J1C4E2	7.0e-43	68.31	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1	[more]
A0A6J1C815	1.6e-42	63.27	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1	[more]

BLAST of Lcy11g005630 vs. NCBI nr


Match Name	E-value	Identity	Description
PON48265.1	8.5e-43	63.09	Ferredoxin [2Fe-2S] [Trema orientale]	[more]
XP_030510578.1	1.1e-42	63.33	ferredoxin [Cannabis sativa] >KAF4352261.1 hypothetical protein G4B88_029217 [Ca...	[more]
XP_022136605.1	1.5e-42	68.31	ferredoxin-2-like [Momordica charantia]	[more]
XP_022136608.1	3.2e-42	63.27	ferredoxin [Momordica charantia]	[more]
KAF4352271.1	4.2e-42	66.44	hypothetical protein G4B88_029227 [Cannabis sativa]	[more]

BLAST of Lcy11g005630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10960.1	2.3e-38	54.73	ferredoxin 1	[more]
AT1G60950.1	6.7e-38	55.78	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	8.8e-30	51.75	ferredoxin 3	[more]
AT5G10000.1	1.7e-25	50.44	ferredoxin 4	[more]
AT1G32550.1	7.5e-13	38.75	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 47..145 e-value: 1.1E-33 score: 116.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 56..128 e-value: 1.5E-17 score: 63.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 50..140 score: 11.871924
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 52..135 e-value: 3.56203E-29 score: 100.162
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 49..143 e-value: 2.8E-44 score: 146.8
None	No IPR available	PANTHER	PTHR43112:SF20	FERREDOXIN	coord: 3..142
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 3..142
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 86..94
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 49..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g005630.1	Lcy11g005630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding