Lcy11g004770 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004770
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	homeobox protein HAT3.1 isoform X2
Location	Chr11: 4628862 .. 4629723 (+)
RNA-Seq Expression	Lcy11g004770
Synteny	Lcy11g004770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGGGCCAAGAAATGGAGCCCAGAATGAGAGGGGCGCACGCAATATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCAGATAGTAACGGTGGCCCAGATTTGGAGGACTCCGAGTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAGAAGAAGAAGAAGAACAACAACAACAACAACAACCATCGCCAAAATTTTTACTCTTGTCTCTCGAAACTCCATCAACGGACACCACCAACAAGATCCAAAACCCGCCTTCTTTCACGGACGATACTTTGCTCACCAGGTACCTCTTTCCAATAGGTTTTTCTTTTCTTTTCTTCCATGTTCTTGTGTTTCTGCTGGATTCTCGTTGTTTCTTGAGAATTGGAGCCAAAAGGGAAATGGAGTTTTCCAGCCCCATGCATTGCTTTGCTCTTTTCTTCAAATGCTTAGCTCGTTAATTGCATTTGTTTCTTTGCTTTCCTTTTTCCCACTTTACCGTTTGCTTTGCTTAACCGGCGGAGAAAGAAGCGTAATGATTCGAGAAATGTTATTTTTTTAACTTGCTGTCTTTCCTTGCTGAAGTATTACTTCAATTGTAGCTTGGTTGTTTCATGACCGGGGACTAACCTTTAATCTTGAAGAATTTCATTGCTAAGATCCTGATTTCATTACGTCGAGCTTAATTTTTCCCCCTTGGAAGCTTAGTTCCACGTAATTGATGTCGTATGTGAGTTTGGACGTACAAATTTCTGAGGTTCGAGCTGGAGTACGAGCCAACCTGAGCTGAGCTTTTTGTTTAGGCATTTGTAACTCCCGTCGAGCCTCACCCGCCCGTTTTTGCAATGTAA

mRNA sequence

ATGGAAAATGGGCCAAGAAATGGAGCCCAGAATGAGAGGGGCGCACGCAATATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCAGATAGTAACGGTGGCCCAGATTTGGAGGACTCCGAGTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAGAAGAAGAAGAAGAACAACAACAACAACAACAACCATCGCCAAAATTTTTACTCTTGTCTCTCGAAACTCCATCAACGGACACCACCAACAAGATCCAAAACCCGCCTTCTTTCACGGACGATACTTTGCTCACCAGGCATTTGTAACTCCCGTCGAGCCTCACCCGCCCGTTTTTGCAATGTAA

Coding sequence (CDS)

ATGGAAAATGGGCCAAGAAATGGAGCCCAGAATGAGAGGGGCGCACGCAATATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCAGATAGTAACGGTGGCCCAGATTTGGAGGACTCCGAGTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAGAAGAAGAAGAAGAACAACAACAACAACAACAACCATCGCCAAAATTTTTACTCTTGTCTCTCGAAACTCCATCAACGGACACCACCAACAAGATCCAAAACCCGCCTTCTTTCACGGACGATACTTTGCTCACCAGGCATTTGTAACTCCCGTCGAGCCTCACCCGCCCGTTTTTGCAATGTAA

Protein sequence

MENGPRNGAQNERGARNMSGGSGRQTVRVKAGQNADSNGGPDLEDSESETKPLYSLFALRRRRRTTTTTTTIAKIFTLVSRNSINGHHQQDPKPAFFHGRYFAHQAFVTPVEPHPPVFAM

Homology

[Close]

BLAST of Lcy11g004770 vs. ExPASy TrEMBL
Match: A0A6J1D7M5 (homeobox protein HAT3.1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017765 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.9e-12
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 15 ARNMSGGSGRQTVRVKAGQNADS-NGGPDLEDSESETKPLYSLFALRRRRRTTTTTTTIA 74
          ARNM GGSGRQTVRVKAG+NA + NGGPDLED  SETKPLYSLFALR R  TTTT  TI 
Sbjct: 26 ARNMCGGSGRQTVRVKAGRNAAACNGGPDLED--SETKPLYSLFALRTRTATTTTRRTID 85

Query: 75 KI 76
          KI
Sbjct: 86 KI 85

[Close]

BLAST of Lcy11g004770 vs. ExPASy TrEMBL
Match: A0A0A0LBT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 9  AQNERGARNMSGGSGRQTVRVKAGQNADSNGGPDLEDSESETKPLYSLFALRRRRRTTTT 68
          A+NE      SGGSGRQTVRVKA QNA SNGGPDLED  SETKPLYSLF LR +RRT   
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLED--SETKPLYSLFPLRTQRRTEQQ 68

Query: 69 TTTIAKIFT 78
          TT IAK  T
Sbjct: 69 TTIIAKFLT 75

[Close]

BLAST of Lcy11g004770 vs. NCBI nr
Match: XP_022149327.1 (homeobox protein HAT3.1 isoform X2 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 15 ARNMSGGSGRQTVRVKAGQNADS-NGGPDLEDSESETKPLYSLFALRRRRRTTTTTTTIA 74
          ARNM GGSGRQTVRVKAG+NA + NGGPDLED  SETKPLYSLFALR R  TTTT  TI 
Sbjct: 26 ARNMCGGSGRQTVRVKAGRNAAACNGGPDLED--SETKPLYSLFALRTRTATTTTRRTID 85

Query: 75 KI 76
          KI
Sbjct: 86 KI 85

[Close]

BLAST of Lcy11g004770 vs. NCBI nr
Match: KGN57486.1 (hypothetical protein Csa_010932 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 9  AQNERGARNMSGGSGRQTVRVKAGQNADSNGGPDLEDSESETKPLYSLFALRRRRRTTTT 68
          A+NE      SGGSGRQTVRVKA QNA SNGGPDLED  SETKPLYSLF LR +RRT   
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLED--SETKPLYSLFPLRTQRRTEQQ 68

Query: 69 TTTIAKIFT 78
          TT IAK  T
Sbjct: 69 TTIIAKFLT 75

The following BLAST results are available for this feature:

BLAST of Lcy11g004770 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g004770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7M5	6.9e-12	79.03	homeobox protein HAT3.1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101776...	[more]
A0A0A0LBT3	1.2e-11	71.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1	[more]

BLAST of Lcy11g004770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149327.1	1.4e-11	79.03	homeobox protein HAT3.1 isoform X2 [Momordica charantia]	[more]
KGN57486.1	2.4e-11	71.01	hypothetical protein Csa_010932 [Cucumis sativus]	[more]

BLAST of Lcy11g004770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004770.1	Lcy11g004770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046872	metal ion binding