Lcy11g004660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	UBP-type domain-containing protein
Location	Chr11: 4545919 .. 4549035 (+)
RNA-Seq Expression	Lcy11g004660
Synteny	Lcy11g004660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTATCTAAGCACACATCATTTAATAAACAATTAAACTTTATTATTTTTTTATACTTCGAAATAAAACTATAAATAATTTCACATCATCGCAAAAGATGCTGCAAGTCCAAGCAAGTCGTGAGAATTCTCTCTTCATCAATGGCGAAAGAAGCCGGCTCTTCCTCTTCCTCTTCCAACCCAATGGTATCGTAATCAAATCACTCCGTCCACTTCTCTTTGGTTGCCGGAAAAACTCCCAGTTCCTATATTCCTCTATCAATTTCTTTTAGCTCTTTTTATCGCTGTTGAATTGAATCGCTGATCTTGGCAATGTTGTTTTCCTCTTCTCTAGCCATGTCTACTCGAAGAAGAAGTTGAAGAAGAACTCTTATTCGGCGCCGAAGCGGGATGGGTCGAAGCTCTGACTACTTGTGATCATCTCGCTTCGCTGTCTTCAGACCTCGATCACATTCCGGCCCCTGATACCGCCTGCAGCGAGTCAGTTATTCCTTTCCCTAAACCTATTTTGTTGTTCAGCTTAGGCTTAGGATTTGGGGACGTTTGAATTGCTGCAATTTTCAGTATCATTTCCATTTATGTTGTGGACATTGCTGAAGAGTTATGTGGTAAATTTATGTTTTGATTTGATTTTTTTTTTTTTTTTCTTTATGAGGTTTTGCTCTATTAATCTGGAATGTTATGATTAATCGATAAGAGTGTGCTTGGGTTCAAAATGAAAGCTGTCAATCCAATTAAGAAACTAAGTCTTGGTGGATAATTTGTTAATTGTAGCAAACTTGAGTGGTTGACTTGAGCGTAGTTTCAAATTCAATGGTTAGACAATTAAGAGTTGATGTCCTTAATATGGGTTGTGAGTTTGAATCTCCTTCTCTCATTTGTAATGAAGTATTGGCAGAAGAAAAAAATCGTCTTTGAGGACCTTAGGCATCTATGAAGACTCTGAAATATGGTATCTACCCCAATGTTTTAGGTTGCCATGTTCTTCCTGGATCCAAATAGGAAATCAAAACTGAACTTCCTTTCTTTTACTGCATTTCTGTTTCTCAGGAGCAAAACAGGTAGAAATATGAGGATATGTTAAGCTATTTTTTCTCGTATGCTCCATTGACTAATGGAGAATTCTCTAGTGACCAATGCTTCTCTGAATCTCTTTTACCTCTTATTGTGTAGACTTTCTTGTTGGTCTTTTTAGTATTCTCTAGTAAGCACCCTTCCATCTCAAGTAATCTCTTCTGATTATTCTTTATGTGTTCTATAGCGTTTTCTTTTTTCCTCCCATCTGTTGTGTCTCATCCATGCGTGAGTAGATTAGTTTTCATCCTACCTTGTATGAACAGCTTACTAGATTTTTATCTTAATGAGGCTAGATTTAATAAACATGGCACTACATGAAAGTAAAGTAGTAATGCCTTTAATGTATCCTGCACTTGCCTCTTATGCTGGCGGAGTTCCGTTTGGGTTATTGTAGAATTGTTTCCTTAATTTCTTTTGACAAAAGTGAGATATCTGGAGGCTCCACTCTTTGCAATTACGTTCATAGCCCACCTCCATTAATTCTTAGGGGCTTCACCCACTTCAAGGCCAGCACCAAGAAACAACAAAGATATAAAATTATTAAGGTTTGGTCATGGAGGCTTTAAACACAAGATTTTGAAGGATATATTTAAACATCTCAAGCACTTACCATTGAGGCCACCCTTGGAAGTTAGTATTCCATTGATGTCATACACAAAAGATTGAAGTTCTTCCATTTCAACTAGACTACTTCTTGTTTTAGTGGTACTGTACAAGAAAAACATAATTAGATGTTTTGGTATCTTAACATTACCGTTTTTTTTAGATAAGATTTGAACTTTTATTGATAATAAATGAAAGATGTATCTTACCATTACCTGAAGCACACCAATAAGTGATTTTTTTTCCCTGTGGTGCTATCTCTGTAAAAAGTGTCAATTTTTGTATGGTATAACTTGTAACTTGTAAGTGGTGTATAATTTTCTGTTTATAAGTGCCTTCAGATCCATTTCATGTTTTCATTTAGTTTTAGACTACCATGATCTGGAAAACACCTTTTTTATTTGGTTTATTAATCTAAGGAACAATCTGTATATGCAAGATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGAATGTCTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAACCATTGCCTTGCACTCAGCTACAGGTATAAAATGGTTCCTTAAATAGTGTTTTATTTTCTGCCCTTAAGTTTTCTCAATGCCTTGTTTATTTACAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACATGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCACCATTTCGATAGTGTTAAATCTTCCTACAGGGAGGACTGAAATTTCAGACAAGTGTTTTAAATTTTAATTGTTATAGTCTTGATATCTTAGATGCCTTGGTCTCTTGGTTTGTAGAAGTGGGCATTTTAAGCAAATGGCTTATGATCTTTTTCACATGAATTGGGATGGGTTATCAGATGTTATGATGAATTGTTGATTGTTTCTTTTACAGAAATATGAGGGATAAATTGCAGTCTCCTATCTTGTTCAAGAAAATTTAGGGAGTTTTTACTTGAAACTGACAAATCTTCCTACAAATCTTGATGATGGCATTAATGAAATTGGTTCTCAATTTTTATCATTCTTCATTTTTTTTCAAGTGTTGGCCTTTTGGATCAGAGAAACTTAGCTTCAATTTTGATTGCAAAGAAATTTCCAGACAGTTTCAATTGTCTAGCAAAATATTTATCCCTTTCAAGTCATTTTCGTTAATCCAGCTGATTAAGGGGAAAAAAAATGAAACAGAAACATCAATTGCTCAATGAATGCAGTAAAGACCTACATCGAGCCATTGATGTTGCAGCATTGCAAAAGAATTAGTATTATGAAGATATAATGTTTAAGTACAACTAAACATCTTTGCAACAGTAATTACAATGTAAATGTGGACCTTAATGTGCTAGTTGTTGTAG

mRNA sequence

TAGTATCTAAGCACACATCATTTAATAAACAATTAAACTTTATTATTTTTTTATACTTCGAAATAAAACTATAAATAATTTCACATCATCGCAAAAGATGCTGCAAGTCCAAGCAAGTCGTGAGAATTCTCTCTTCATCAATGGCGAAAGAAGCCGGCTCTTCCTCTTCCTCTTCCAACCCAATGCCATGTCTACTCGAAGAAGAAGTTGAAGAAGAACTCTTATTCGGCGCCGAAGCGGGATGGGTCGAAGCTCTGACTACTTGTGATCATCTCGCTTCGCTGTCTTCAGACCTCGATCACATTCCGGCCCCTGATACCGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGAATGTCTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAACCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACATGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCACCATTTCGATAGTGTTAAATCTTCCTACAGGGAGGACTGAAATTTCAGACAAGTGTTTTAAATTTTAATTGTTATAGTCTTGATATCTTAGATGCCTTGGTCTCTTGGTTTGTAGAAGTGGGCATTTTAAGCAAATGGCTTATGATCTTTTTCACATGAATTGGGATGGGTTATCAGATGTTATGATGAATTGTTGATTGTTTCTTTTACAGAAATATGAGGGATAAATTGCAGTCTCCTATCTTGTTCAAGAAAATTTAGGGAGTTTTTACTTGAAACTGACAAATCTTCCTACAAATCTTGATGATGGCATTAATGAAATTGGTTCTCAATTTTTATCATTCTTCATTTTTTTTCAAGTGTTGGCCTTTTGGATCAGAGAAACTTAGCTTCAATTTTGATTGCAAAGAAATTTCCAGACAGTTTCAATTGTCTAGCAAAATATTTATCCCTTTCAAGTCATTTTCGTTAATCCAGCTGATTAAGGGGAAAAAAAATGAAACAGAAACATCAATTGCTCAATGAATGCAGTAAAGACCTACATCGAGCCATTGATGTTGCAGCATTGCAAAAGAATTAGTATTATGAAGATATAATGTTTAAGTACAACTAAACATCTTTGCAACAGTAATTACAATGTAAATGTGGACCTTAATGTGCTAGTTGTTGTAG

Coding sequence (CDS)

ATGGCGAAAGAAGCCGGCTCTTCCTCTTCCTCTTCCAACCCAATGCCATGTCTACTCGAAGAAGAAGTTGAAGAAGAACTCTTATTCGGCGCCGAAGCGGGATGGGTCGAAGCTCTGACTACTTGTGATCATCTCGCTTCGCTGTCTTCAGACCTCGATCACATTCCGGCCCCTGATACCGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGAATGTCTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAACCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACATGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCACCATTTCGATAG

Protein sequence

MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

Homology

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BLAST of Lcy11g004660 vs. ExPASy Swiss-Prot
Match: Q20296 (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-18
Identity = 56/143 (39.16%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 2   AKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDTA 61
           +  +GSSSSS+ P   L       E++    A  V  L TC HL  +           TA
Sbjct: 822 SSSSGSSSSSTRPSHNL-------EIMDSGPAHAVVPLATCPHLKEVKPLPPAKINARTA 881

Query: 62  CSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDA 121
           CSECQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+  
Sbjct: 882 CSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHN 941

Query: 122 QVIQELRPVHEVAYILKFGEAPP 145
                L      A+  KFGE  P
Sbjct: 942 PA---LIGAKSAAHESKFGETMP 954

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BLAST of Lcy11g004660 vs. ExPASy Swiss-Prot
Match: Q9UBN7 (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-17
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 36   VEALTTCDHLASLSSDLDHIPAP----DTACSECQNPKENWLCLCCKNVFCSRFVNKHML 95
            V  L  C HL ++      IPA        C +C   +ENW+CL C  V+C R++N HML
Sbjct: 1107 VTPLPWCPHLVAVCP----IPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHML 1166

Query: 96   QHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP 145
            QH+  S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Sbjct: 1167 QHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLD---VKNIAHQNKFGEDMP 1212

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BLAST of Lcy11g004660 vs. ExPASy Swiss-Prot
Match: Q9Z2V5 (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-16
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 36   VEALTTCDHLASLSSDLDHIPAP----DTACSECQNPKENWLCLCCKNVFCSRFVNKHML 95
            V  L+ C HL ++      IPA        C  C   +ENW+CL C  V+CSR+VN HM+
Sbjct: 1041 VTPLSWCPHLMAVCP----IPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMV 1100

Query: 96   QHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP 145
             H++ S H L LS  DLS WC+ C AY+     ++L+ V   A+  KFGE  P
Sbjct: 1101 CHHEASEHPLVLSCVDLSTWCYVCQAYVHH---EDLQDVKNAAHQNKFGEDMP 1146

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BLAST of Lcy11g004660 vs. ExPASy Swiss-Prot
Match: Q9H0E7 (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 29/84 (34.52%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 38  ALTTCDHLASLSSDLDH--IPAPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQ 97
           A+ TC H+  L    DH  +      C +C   +  W CL C +V C R++ +H L+H+Q
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 98  QSNHCLALSYSDLSVWCFSCDAYL 120
           +S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

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BLAST of Lcy11g004660 vs. ExPASy Swiss-Prot
Match: Q54QE6 (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 60  TACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYL 119
           T C  C +  ENW+C+ C  V CSR VN H  +H++ + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

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BLAST of Lcy11g004660 vs. ExPASy TrEMBL
Match: A0A0A0KT14 (UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 123/146 (84.25%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MA++AGSSSS+SNP+  ++E+EVEEELL+GA +GWV+ALT+CDHLASLSSDL HIP P T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
            CS+CQNPKENW+CLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

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BLAST of Lcy11g004660 vs. ExPASy TrEMBL
Match: A0A1S3BZ94 (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 125/148 (84.46%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCL--LEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAP 60
           MA+EAGSSSS+SN +P +  +E+EVEEELL+GA +GWV+ALT+CDHLASLSSDL HIP P
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAY 120
            T CS+CQNPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

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BLAST of Lcy11g004660 vs. ExPASy TrEMBL
Match: A0A6J1D695 (histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.9e-68
Identity = 129/146 (88.36%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MA EAG  SSSSN  PC++EEE EE+ LFGAEAGWVEALT CDHLASLSSDL HIP PDT
Sbjct: 1   MANEAG--SSSSNLPPCIIEEEGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDT 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
           ACSECQNPKENWLCLCCKN+ CSRFVNKHMLQHYQQS HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVYEVAYILKFGEAPPFR 143

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BLAST of Lcy11g004660 vs. ExPASy TrEMBL
Match: A0A5A7TNA2 (Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00740 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.4e-68
Identity = 124/148 (83.78%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCL--LEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAP 60
           MA+EAGSSSS+SN +P +  +E+EVEEELL+GA +GWV+ALT+CDHLASLSSDL HIP P
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAY 120
            T CS+CQNPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of Lcy11g004660 vs. ExPASy TrEMBL
Match: A0A6J1FUZ8 (BTB/POZ domain-containing protein NPY2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447517 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 114/142 (80.28%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 5   AGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDTACSE 64
           A +SS SS P      +++ +E L+GAE+GWVEALT+CDHL SL SDL HIP PDTAC E
Sbjct: 484 ASTSSGSSTPELPKGVKDLTKEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE 543

Query: 65  CQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVI 124
           C+NPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLDAQ+I
Sbjct: 544 CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLI 603

Query: 125 QELRPVHEVAYILKFGEAPPFR 147
           QELRPVHEVAYILKFGE PPFR
Sbjct: 604 QELRPVHEVAYILKFGEVPPFR 625

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BLAST of Lcy11g004660 vs. NCBI nr
Match: KAG6600290.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.2 bits (692), Expect = 5.3e-69
Identity = 127/146 (86.99%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MA EAG  SSSSNP PC++EEEV EE L+GAE+GWVEALT+CDHL SL SDL HIP PDT
Sbjct: 1   MANEAG--SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
           AC EC+NPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACCECENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQLIQELRPVHEVAYILKFGEAPPFR 144

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BLAST of Lcy11g004660 vs. NCBI nr
Match: XP_004152271.1 (histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015084 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 9.1e-69
Identity = 123/146 (84.25%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MA++AGSSSS+SNP+  ++E+EVEEELL+GA +GWV+ALT+CDHLASLSSDL HIP P T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
            CS+CQNPKENW+CLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

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BLAST of Lcy11g004660 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 4.5e-68
Identity = 125/148 (84.46%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCL--LEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAP 60
           MA+EAGSSSS+SN +P +  +E+EVEEELL+GA +GWV+ALT+CDHLASLSSDL HIP P
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAY 120
            T CS+CQNPKENWLCLCCK+VFCSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

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BLAST of Lcy11g004660 vs. NCBI nr
Match: XP_038904979.1 (histone deacetylase 6 [Benincasa hispida])

HSP 1 Score: 267.7 bits (683), Expect = 5.9e-68
Identity = 127/146 (86.99%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MAKEAG  SSSSNP+P +LEEEVEEELL+GAE+GWVEALT+CDHLA LS DL HIP PD 
Sbjct: 1   MAKEAG--SSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLALLSPDLAHIPPPDI 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
            CSECQNPKENWLCL CK+VFCSRFVNKHMLQHY+Q  HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSECQNPKENWLCLSCKDVFCSRFVNKHMLQHYEQVTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Lcy11g004660 vs. NCBI nr
Match: XP_022149228.1 (histone deacetylase 6 [Momordica charantia])

HSP 1 Score: 267.7 bits (683), Expect = 5.9e-68
Identity = 129/146 (88.36%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MA EAG  SSSSN  PC++EEE EE+ LFGAEAGWVEALT CDHLASLSSDL HIP PDT
Sbjct: 1   MANEAG--SSSSNLPPCIIEEEGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDT 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
           ACSECQNPKENWLCLCCKN+ CSRFVNKHMLQHYQQS HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVYEVAYILKFGEAPPFR 143

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BLAST of Lcy11g004660 vs. TAIR 10
Match: AT2G14830.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 213.8 bits (543), Expect = 9.4e-56
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
           MA++A SSSSSS+P P  + +E ++ +L GA +GWVEA  TCDHL +LS DL H+P PDT
Sbjct: 1   MAEKAPSSSSSSSP-PKEVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61  ACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120
            CS CQNP ENWLCLCCK V CSRFVN+HML H+QQ+ HCLALSYSDLSVWCF C+AYLD
Sbjct: 61  PCSRCQNPVENWLCLCCKEVLCSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPP 145
           AQ+I +LRP+H+ AYILKFGEAPP
Sbjct: 121 AQIILQLRPIHQAAYILKFGEAPP 142

[Close]

BLAST of Lcy11g004660 vs. TAIR 10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1  MAKEAGSSSSSSNPMPCLLEEEVEEELLFGAEAGWVEALTTCDHLASLSSDLDHIPAPDT 60
          MA++A SSSSSS+P P  + +E ++ +L GA +GWVEA  TCDHL +LS DL H+P PDT
Sbjct: 1  MAEKAPSSSSSSSP-PKEVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61 ACS 64
           CS
Sbjct: 61 PCS 61

[Close]

BLAST of Lcy11g004660 vs. TAIR 10
Match: AT2G26000.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 18/61 (29.51%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 59  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAY 118
           ++ C  CQ  +  W+C+ C  V C R+   H  +H++++ HC +L      VW ++ D Y
Sbjct: 215 NSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDNY 274

Query: 119 L 120
           +
Sbjct: 275 V 275

[Close]

BLAST of Lcy11g004660 vs. TAIR 10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 18/61 (29.51%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 59  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAY 118
           ++ C  CQ  +  W+C+ C  V C R+   H  +H++++ HC +L      VW ++ D Y
Sbjct: 215 NSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDNY 274

Query: 119 L 120
           +
Sbjct: 275 V 275

The following BLAST results are available for this feature:

BLAST of Lcy11g004660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q20296	4.4e-18	39.16	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
Q9UBN7	2.2e-17	41.59	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
Q9Z2V5	5.4e-16	40.71	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
Q9H0E7	2.4e-11	34.52	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 S...	[more]
Q54QE6	3.1e-11	43.33	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]

BLAST of Lcy11g004660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT14	4.4e-69	84.25	UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE...	[more]
A0A1S3BZ94	2.2e-68	84.46	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
A0A6J1D695	2.9e-68	88.36	histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1	[more]
A0A5A7TNA2	6.4e-68	83.78	Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A6J1FUZ8	2.0e-61	80.28	BTB/POZ domain-containing protein NPY2-like isoform X2 OS=Cucurbita moschata OX=...	[more]

BLAST of Lcy11g004660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600290.1	5.3e-69	86.99	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004152271.1	9.1e-69	84.25	histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015...	[more]
XP_008454385.1	4.5e-68	84.46	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
XP_038904979.1	5.9e-68	86.99	histone deacetylase 6 [Benincasa hispida]	[more]
XP_022149228.1	5.9e-68	88.36	histone deacetylase 6 [Momordica charantia]	[more]

BLAST of Lcy11g004660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14830.2	9.4e-56	69.44	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G14830.1	5.4e-11	57.14	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G26000.1	4.0e-06	29.51	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G26000.2	4.0e-06	29.51	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 61..110 e-value: 1.3E-9 score: 48.0
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 62..120 e-value: 1.4E-18 score: 67.0
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 60..121 score: 17.913794
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 36..143 e-value: 3.0E-30 score: 106.1
None	No IPR available	PANTHER	PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	coord: 1..146
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 39..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004660.1	Lcy11g004660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009958	positive gravitropism
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0008270	zinc ion binding