Lcy11g004600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 4489554 .. 4489953 (+)
RNA-Seq Expression	Lcy11g004600
Synteny	Lcy11g004600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGAGATGAAAAAGAAGGTTGCTTTGGTGGCTATGGTTGTTGTGATGGTGGTAATGGCTCAATCCGCCACCGCCATCGCCGCCATGGATGAGGCGATTCAGCTCCCGTCGGACGGCAGAGCAGGGGATTCCGATACACCGATAGTCTGTCCTGTTACGATATTGCCATGCAAAACTGACTCGGAGTGCTCTCCATGCTACTGTGTTTATGGCTCCTGTATGTTTCAAAACTAAAGAAGATGAAGAACAATGGCCTTTCTTTTTTTCTCTTTTCTTTCTATGTTTTTTGCAGAATAAAAACTTCCCTTTTGATCCCTCTTTGTCATATTTGACTGAATCATGATTTTGTGTTGCAATTGTTGTTGAACTGCAAAATCAATGGAGGTTCCATTAATTTCC

mRNA sequence

GATGGAGATGAAAAAGAAGGTTGCTTTGGTGGCTATGGTTGTTGTGATGGTGGTAATGGCTCAATCCGCCACCGCCATCGCCGCCATGGATGAGGCGATTCAGCTCCCGTCGGACGGCAGAGCAGGGGATTCCGATACACCGATAGTCTGTCCTGTTACGATATTGCCATGCAAAACTGACTCGGAGTGCTCTCCATGCTACTGTGTTTATGGCTCCTGTATGTTTCAAAACTAAAGAAGATGAAGAACAATGGCCTTTCTTTTTTTCTCTTTTCTTTCTATGTTTTTTGCAGAATAAAAACTTCCCTTTTGATCCCTCTTTGTCATATTTGACTGAATCATGATTTTGTGTTGCAATTGTTGTTGAACTGCAAAATCAATGGAGGTTCCATTAATTTCC

Coding sequence (CDS)

ATGGAGATGAAAAAGAAGGTTGCTTTGGTGGCTATGGTTGTTGTGATGGTGGTAATGGCTCAATCCGCCACCGCCATCGCCGCCATGGATGAGGCGATTCAGCTCCCGTCGGACGGCAGAGCAGGGGATTCCGATACACCGATAGTCTGTCCTGTTACGATATTGCCATGCAAAACTGACTCGGAGTGCTCTCCATGCTACTGTGTTTATGGCTCCTGTATGTTTCAAAACTAA

Protein sequence

MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTDSECSPCYCVYGSCMFQN

Homology

[Close]

BLAST of Lcy11g004600 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-17
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDT---PIVCPVTILPC 60
          MEMK KVALVAMVVVMVVM +SAT  AAMDE I+LP++G A   DT   P VCP+ ILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVYGSCM 75
          KTDSECSPCYC  GSC+
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Lcy11g004600 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTD 60
          MEMK K ALVAMVV MVVMAQS T I A DE I+L     +G  +T  VCP TILPCKTD
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL-----SGGENTARVCPATILPCKTD 60

Query: 61 SECSPCYC--VYGSCM 75
          SECSPC C    GSC+
Sbjct: 61 SECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004600 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTD 60
          MEMK K ALVAMVV MVVMAQS T I A DE I++     +G  +T  VCP TILPCKTD
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEV-----SGGENTARVCPATILPCKTD 60

Query: 61 SECSPCYC--VYGSCM 75
          SECSPC C    GSC+
Sbjct: 61 SECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004600 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTD 60
          MEMK K ALVAMVV MVVMAQS T I A DE I+L     +G  +T  VCP T+LPC+TD
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL-----SGGENTARVCPATLLPCETD 60

Query: 61 SECSPCYC 69
          SECSPC C
Sbjct: 61 SECSPCIC 62

[Close]

BLAST of Lcy11g004600 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDT---PIVCPVTILPC 60
          MEMK KVALVAMVVVMVVM +SAT  AAMDE I+LP++G A   DT   P VCP+ ILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVYGSCM 75
          KTDSECSPCYC  GSC+
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Lcy11g004600 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-10
Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTD 60
          MEMK K ALVAMVV MVVMAQS T I A DE I+L     +G  +T  VCP TILPCKTD
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL-----SGGENTARVCPATILPCKTD 60

Query: 61 SECSPCYC--VYGSCM 75
          SECSPC C    GSC+
Sbjct: 61 SECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004600 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-10
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTD 60
          MEMK K ALVAMVV MVVMAQS T I A DE I++     +G  +T  VCP TILPCKTD
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEV-----SGGENTARVCPATILPCKTD 60

Query: 61 SECSPCYC--VYGSCM 75
          SECSPC C    GSC+
Sbjct: 61 SECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004600 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-09
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MEMKKKVALVAMVVVMVVMAQSATAIAAMDEAIQLPSDGRAGDSDTPIVCPVTILPCKTD 60
          MEMK K ALVAMVV MVVMAQS T I A DE I+L     +G  +T  VCP T+LPC+TD
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL-----SGGENTARVCPATLLPCETD 60

Query: 61 SECSPCYC 69
          SECSPC C
Sbjct: 61 SECSPCIC 62

The following BLAST results are available for this feature:

BLAST of Lcy11g004600 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g004600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	1.6e-17	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A5A7TRY5	1.9e-10	64.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1Q5	4.2e-10	63.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE9	2.1e-09	64.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]

BLAST of Lcy11g004600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52766.1	3.3e-17	71.43	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KAA0044341.1	3.9e-10	64.47	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
TYK29470.1	8.6e-10	63.16	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]
KGN52767.1	4.3e-09	64.71	hypothetical protein Csa_015168 [Cucumis sativus]	[more]

BLAST of Lcy11g004600 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004600.1	Lcy11g004600.1	mRNA