Lcy11g004590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 4485686 .. 4485931 (+)
RNA-Seq Expression	Lcy11g004590
Synteny	Lcy11g004590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAAAACGAAGGTGGCTTTTGTGGCTATGGTGGTTTTGGTGGTGGTTATGGCTCAGTCCGCCACCGCAGTCGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAAGTTATGACGAGACACTGCCACCTCCGATCATCTGTCCTGCTACGTTCGTGCCATGCAAAACTGATGCCATCTGCTCTCCATGCTACTGTGTTGATGGCAACTGCGTTCCACACAAAGGAAAATGA

mRNA sequence

ATGAAGATGAAAACGAAGGTGGCTTTTGTGGCTATGGTGGTTTTGGTGGTGGTTATGGCTCAGTCCGCCACCGCAGTCGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAAGTTATGACGAGACACTGCCACCTCCGATCATCTGTCCTGCTACGTTCGTGCCATGCAAAACTGATGCCATCTGCTCTCCATGCTACTGTGTTGATGGCAACTGCGTTCCACACAAAGGAAAATGA

Coding sequence (CDS)

ATGAAGATGAAAACGAAGGTGGCTTTTGTGGCTATGGTGGTTTTGGTGGTGGTTATGGCTCAGTCCGCCACCGCAGTCGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAAGTTATGACGAGACACTGCCACCTCCGATCATCTGTCCTGCTACGTTCGTGCCATGCAAAACTGATGCCATCTGCTCTCCATGCTACTGTGTTGATGGCAACTGCGTTCCACACAAAGGAAAATGA

Protein sequence

MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCKTDAICSPCYCVDGNCVPHKGK

Homology

[Close]

BLAST of Lcy11g004590 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-15
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSAT-AVAVDEAIQLPSEGGASYDETLPPPIICPATFVPC 60
          M+MK KVA VAMVV++VVM +SAT   A+DE I+LP+ G ASY +T PPP +CP   +PC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDAICSPCYCVDGNCV 77
          KTD+ CSPCYC +G+C+
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Lcy11g004590 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCK 60
          M+MK K A VAMVV +VVMAQS T +  DE I+L   GG +         +CPAT +PCK
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEL--SGGENTAR------VCPATILPCK 60

Query: 61 TDAICSPCYC--VDGNCV 77
          TD+ CSPC C    G+C+
Sbjct: 61 TDSECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004590 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCK 60
          M+MK K A VAMVV +VVMAQS T +  DE I++   GG +         +CPAT +PCK
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEV--SGGENTAR------VCPATILPCK 60

Query: 61 TDAICSPCYC--VDGNCV 77
          TD+ CSPC C    G+C+
Sbjct: 61 TDSECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004590 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCK 60
          M+MK K A VAMVV +VVMAQS T +  DE I+L   GG +         +CPAT +PC+
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEL--SGGENTAR------VCPATLLPCE 60

Query: 61 TDAICSPCYC--VDGNCV 77
          TD+ CSPC C    G CV
Sbjct: 61 TDSECSPCICNVKSGACV 70

[Close]

BLAST of Lcy11g004590 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSAT-AVAVDEAIQLPSEGGASYDETLPPPIICPATFVPC 60
          M+MK KVA VAMVV++VVM +SAT   A+DE I+LP+ G ASY +T PPP +CP   +PC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDAICSPCYCVDGNCV 77
          KTD+ CSPCYC +G+C+
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Lcy11g004590 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-07
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCK 60
          M+MK K A VAMVV +VVMAQS T +  DE I+L   GG +         +CPAT +PCK
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEL--SGGENTAR------VCPATILPCK 60

Query: 61 TDAICSPCYC--VDGNCV 77
          TD+ CSPC C    G+C+
Sbjct: 61 TDSECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004590 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCK 60
          M+MK K A VAMVV +VVMAQS T +  DE I++   GG +         +CPAT +PCK
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEV--SGGENTAR------VCPATILPCK 60

Query: 61 TDAICSPCYC--VDGNCV 77
          TD+ CSPC C    G+C+
Sbjct: 61 TDSECSPCICNLQSGSCI 70

[Close]

BLAST of Lcy11g004590 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-06
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MKMKTKVAFVAMVVLVVVMAQSATAVAVDEAIQLPSEGGASYDETLPPPIICPATFVPCK 60
          M+MK K A VAMVV +VVMAQS T +  DE I+L   GG +         +CPAT +PC+
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEL--SGGENTAR------VCPATLLPCE 60

Query: 61 TDAICSPCYC--VDGNCV 77
          TD+ CSPC C    G CV
Sbjct: 61 TDSECSPCICNVKSGACV 70

The following BLAST results are available for this feature:

BLAST of Lcy11g004590 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g004590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	7.7e-15	59.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A5A7TRY5	4.5e-07	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1Q5	1.0e-06	48.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE9	2.3e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]

BLAST of Lcy11g004590 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52766.1	1.6e-14	59.74	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KAA0044341.1	9.4e-07	50.00	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
TYK29470.1	2.1e-06	48.72	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]
KGN52767.1	4.6e-06	50.00	hypothetical protein Csa_015168 [Cucumis sativus]	[more]

BLAST of Lcy11g004590 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004590.1	Lcy11g004590.1	mRNA