Lcy11g004380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 4265280 .. 4266046 (-)
RNA-Seq Expression	Lcy11g004380
Synteny	Lcy11g004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACTCTCCCTCCTTCATTTCTTCTTTAAATTCAACCCCTATCCAAAACCAACGAACCCCAAGTAGCAAAGAAAGAAATGAACATGATCAAGAACATCGTCATCGTGCTTGCAATGGCAGTCATGCTGCTCGTGGCCACTTCGACCCAAGCAGCCATTACTAGTAAGGTGTGTGTACGTGTTAAATCACCACTAGACTCAAACATTTAAGTTGATAGATTACGATAAATTTTAAAGTTGTATTTATATTCTTGACTAGGAGTTTAACCAAGTGATCGAACTCCGTTCCAATGAGACGAGCGGAGTTGGTTCGGACAGGGACACTTCCTCAAGAAAAATGTTGAAAAATGGAGCAGTCGGACTTGGGAATATTGTGGTATGCCCGTCCCAAGGCGCCCCATGTCTCGGCGATGATTACTGTCTTCCTGGGTGCTTCTGTGATTACTCCCGACCAGTGAAACTGGGATTCTGCAATAGTTTGGTTGAATGATATGTTTGATCCATCCCATGAAGTTGTTGTAATTCCTGACCTCTACTGTCTTGCCAAATCTTGGGTTTGGTAATGGTATTGTCAAATGTTGTCTGTTTTCTTTTATGTTTTTATCGAAATAATGGGGTATGTAGGACGATCCCTACATACCGATATGCAGCCAAATATTTTCGATATGGAAAACTCTCACAATGGTTGCTTATTGTCAAGTTTACGTGATTGTATGTTTTCTATATCTATTTCTGTAACCTGTTTTTAAAGAAATAAAAGTGGAGG

mRNA sequence

ATTCACTCTCCCTCCTTCATTTCTTCTTTAAATTCAACCCCTATCCAAAACCAACGAACCCCAAGTAGCAAAGAAAGAAATGAACATGATCAAGAACATCGTCATCGTGCTTGCAATGGCAGTCATGCTGCTCGTGGCCACTTCGACCCAAGCAGCCATTACTAGTAAGGAGTTTAACCAAGTGATCGAACTCCGTTCCAATGAGACGAGCGGAGTTGGTTCGGACAGGGACACTTCCTCAAGAAAAATGTTGAAAAATGGAGCAGTCGGACTTGGGAATATTGTGGTATGCCCGTCCCAAGGCGCCCCATGTCTCGGCGATGATTACTGTCTTCCTGGGTGCTTCTGTGATTACTCCCGACCAGTGAAACTGGGATTCTGCAATAGTTTGGTTGAATGATATGTTTGATCCATCCCATGAAGTTGTTGTAATTCCTGACCTCTACTGTCTTGCCAAATCTTGGGTTTGGTAATGGTATTGTCAAATGTTGTCTGTTTTCTTTTATGTTTTTATCGAAATAATGGGGTATGTAGGACGATCCCTACATACCGATATGCAGCCAAATATTTTCGATATGGAAAACTCTCACAATGGTTGCTTATTGTCAAGTTTACGTGATTGTATGTTTTCTATATCTATTTCTGTAACCTGTTTTTAAAGAAATAAAAGTGGAGG

Coding sequence (CDS)

ATGAACATGATCAAGAACATCGTCATCGTGCTTGCAATGGCAGTCATGCTGCTCGTGGCCACTTCGACCCAAGCAGCCATTACTAGTAAGGAGTTTAACCAAGTGATCGAACTCCGTTCCAATGAGACGAGCGGAGTTGGTTCGGACAGGGACACTTCCTCAAGAAAAATGTTGAAAAATGGAGCAGTCGGACTTGGGAATATTGTGGTATGCCCGTCCCAAGGCGCCCCATGTCTCGGCGATGATTACTGTCTTCCTGGGTGCTTCTGTGATTACTCCCGACCAGTGAAACTGGGATTCTGCAATAGTTTGGTTGAATGA

Protein sequence

MNMIKNIVIVLAMAVMLLVATSTQAAITSKEFNQVIELRSNETSGVGSDRDTSSRKMLKNGAVGLGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCNSLVE

Homology

[Close]

BLAST of Lcy11g004380 vs. ExPASy TrEMBL
Match: A0A5D3E1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00550 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-05
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 1   MNMIKNIVIVLAMAVMLLVATSTQAAITSKEFNQVIELRSNETS-GVGSDRDTSSRKMLK 60
           M ++   V +LAMAV++L+A S  A  TS E ++VIEL S+E +  V ++ +  SRKM+K
Sbjct: 2   MEIMSKKVGLLAMAVLMLMAIS--AGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMK 61

Query: 61  NG-AVGLGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 103
            G   G GN  +C   G PC  D+ C  GC C  +  +KLG C+
Sbjct: 62  EGDRKGSGN-GLCLIVGTPCNSDENCFSGCRCKTTPILKLGICS 102

[Close]

BLAST of Lcy11g004380 vs. ExPASy TrEMBL
Match: A0A5A7TM06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00550 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MNMIKNIVIVLAMAVMLLVATSTQAAITSKEFNQVIELRSNETS-GVGSDRDTSSRKMLK 60
           M ++   V  LAMAV++L+A S  A  TS E ++VIEL S+E +  V ++ +  SRKM+K
Sbjct: 2   MEIMSKKVGFLAMAVLMLMAIS--AGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMK 61

Query: 61  NG-AVGLGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 103
            G   G GN  +C   G PC  D+ C  GC C  +  +KLG C+
Sbjct: 62  EGDRKGSGN-GLCLIVGTPCNSDENCFSGCRCKTTPILKLGICS 102

[Close]

BLAST of Lcy11g004380 vs. NCBI nr
Match: TYK29461.1 (hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 1   MNMIKNIVIVLAMAVMLLVATSTQAAITSKEFNQVIELRSNETS-GVGSDRDTSSRKMLK 60
           M ++   V +LAMAV++L+A S  A  TS E ++VIEL S+E +  V ++ +  SRKM+K
Sbjct: 2   MEIMSKKVGLLAMAVLMLMAIS--AGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMK 61

Query: 61  NG-AVGLGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 103
            G   G GN  +C   G PC  D+ C  GC C  +  +KLG C+
Sbjct: 62  EGDRKGSGN-GLCLIVGTPCNSDENCFSGCRCKTTPILKLGICS 102

[Close]

BLAST of Lcy11g004380 vs. NCBI nr
Match: KAA0044332.1 (hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MNMIKNIVIVLAMAVMLLVATSTQAAITSKEFNQVIELRSNETS-GVGSDRDTSSRKMLK 60
           M ++   V  LAMAV++L+A S  A  TS E ++VIEL S+E +  V ++ +  SRKM+K
Sbjct: 2   MEIMSKKVGFLAMAVLMLMAIS--AGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMK 61

Query: 61  NG-AVGLGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 103
            G   G GN  +C   G PC  D+ C  GC C  +  +KLG C+
Sbjct: 62  EGDRKGSGN-GLCLIVGTPCNSDENCFSGCRCKTTPILKLGICS 102

The following BLAST results are available for this feature:

BLAST of Lcy11g004380 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1J3	9.5e-05	41.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM06	1.6e-04	41.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy11g004380 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29461.1	2.0e-04	41.35	hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa]	[more]
KAA0044332.1	3.3e-04	41.35	hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy11g004380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004380.1	Lcy11g004380.1	mRNA