Lcy11g004260 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004260
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	thymocyte nuclear protein 1
Location	Chr11: 4103504 .. 4104715 (+)
RNA-Seq Expression	Lcy11g004260
Synteny	Lcy11g004260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAATCACGTTTTAAAGTGTAAAATCAAATATCAAATTGATTGTGAATGATTATGTTTCGGGATGATTTCAAATATGACAAAAGTGATTTTAACAATTTCAAAATCACTCCCAAATACGTATTTAGACATCAATTTCTATTGAATAGGTATTGTATTAATTTTTATCCTAAATTTTCAATTTAATCAAATTAGTCTCTAAATTATTTTTTTCCCAAAAAACTATTAATATAAATAAACGAGAGCCATAAGTTTTAGGCGCCAATGCTAGCACGATTTTCCCGCCGGAAATATCACTGACGTCACTTTCTCTTCTCTCTCAAACCACCGAACCACCGTAAGCGAACACCGTTAATCCGAGAAAGACAATGGCCAGCGCCGCCGCCGGAGACAAAAAACAGTACTGGCTTCTGAAGACGGAGCCGGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAACGGCGGGCGAACGAAGTGGGACGGCGTCAAGAACAAGCAAGCCCAGAAGCATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTGGGCGTTGTCGCCGTCGCACGAGAGTGGTACTCGGAGGCAGACGGCAGCGACGCCGTCGTCGACGTCGAGGCGGTTGGGGAAATGAGGGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGGTGAAGAATTTCGCGCTGTTTCGGCAACCGAGGCTGTCGGTTGTGCCGGTCGCGAAGGAAATTTGGGAGAAGATCTGCGAACTGGGAGGCGGATTTGAAGGGGATGGAACGGAGGGCGGCCATGGGAGTGAGGGATAGAGCTTGAATGTGAATGCAGGCAAGGTGTTTGTGAATATGCCTAAGAGAATTTTGTTGAGCCTTTTTTGATTGAACATGAAATTTTGTGAATGGAGATGGAATTGGGATGGATTTCTGGCCTTGATGTTGAAGAATTTTGAGGGGCTTTGCGAAGAAGACGATCCAGAATTTGAAGGCTTAGAGGTATGTTTTTGTTTGTTGTATAAATTGTAGTTTGTGGATTTTTAGGGAATCGAATTTCTGATTATGGAGTTTCTTTAGTTCTTTATCAATGGCAGATTATTCCTTAGCATCAAAACATTGAACGGAATTTTTAAAATTGGGGTAAAAATGAGACATTCGAAATGTTTTTTTTTTTTTAGGTTAA

mRNA sequence

TGAAAATCACGTTTTAAAGTGTAAAATCAAATATCAAATTGATTGTGAATGATTATGTTTCGGGATGATTTCAAATATGACAAAAGTGATTTTAACAATTTCAAAATCACTCCCAAATACGTATTTAGACATCAATTTCTATTGAATAGGTATTGTATTAATTTTTATCCTAAATTTTCAATTTAATCAAATTAGTCTCTAAATTATTTTTTTCCCAAAAAACTATTAATATAAATAAACGAGAGCCATAAGTTTTAGGCGCCAATGCTAGCACGATTTTCCCGCCGGAAATATCACTGACGTCACTTTCTCTTCTCTCTCAAACCACCGAACCACCGTAAGCGAACACCGTTAATCCGAGAAAGACAATGGCCAGCGCCGCCGCCGGAGACAAAAAACAGTACTGGCTTCTGAAGACGGAGCCGGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAACGGCGGGCGAACGAAGTGGGACGGCGTCAAGAACAAGCAAGCCCAGAAGCATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTGGGCGTTGTCGCCGTCGCACGAGAGTGGTACTCGGAGGCAGACGGCAGCGACGCCGTCGTCGACGTCGAGGCGGTTGGGGAAATGAGGGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGGTGAAGAATTTCGCGCTGTTTCGGCAACCGAGGCTGTCGGTTGTGCCGGTCGCGAAGGAAATTTGGGAGAAGATCTGCGAACTGGGAGGCGGATTTGAAGGGGATGGAACGGAGGGCGGCCATGGGAGTGAGGGATAGAGCTTGAATGTGAATGCAGGCAAGGTGTTTGTGAATATGCCTAAGAGAATTTTGTTGAGCCTTTTTTGATTGAACATGAAATTTTGTGAATGGAGATGGAATTGGGATGGATTTCTGGCCTTGATGTTGAAGAATTTTGAGGGGCTTTGCGAAGAAGACGATCCAGAATTTGAAGGCTTAGAGGTATGTTTTTGTTTGTTGTATAAATTGTAGTTTGTGGATTTTTAGGGAATCGAATTTCTGATTATGGAGTTTCTTTAGTTCTTTATCAATGGCAGATTATTCCTTAGCATCAAAACATTGAACGGAATTTTTAAAATTGGGGTAAAAATGAGACATTCGAAATGTTTTTTTTTTTTTAGGTTAA

Coding sequence (CDS)

ATGGCCAGCGCCGCCGCCGGAGACAAAAAACAGTACTGGCTTCTGAAGACGGAGCCGGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAACGGCGGGCGAACGAAGTGGGACGGCGTCAAGAACAAGCAAGCCCAGAAGCATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTGGGCGTTGTCGCCGTCGCACGAGAGTGGTACTCGGAGGCAGACGGCAGCGACGCCGTCGTCGACGTCGAGGCGGTTGGGGAAATGAGGGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGGTGAAGAATTTCGCGCTGTTTCGGCAACCGAGGCTGTCGGTTGTGCCGGTCGCGAAGGAAATTTGGGAGAAGATCTGCGAACTGGGAGGCGGATTTGAAGGGGATGGAACGGAGGGCGGCCATGGGAGTGAGGGATAG

Protein sequence

MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFYHSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALFRQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSEG

Homology

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BLAST of Lcy11g004260 vs. ExPASy Swiss-Prot
Match: Q91YJ3 (Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-13
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 12  YWLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYH 71
           YWL+K+EP          ++S  D  A   +T  WDGV+N QA+  L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116

Query: 72  SGAKARRVVGVVAVAREWY-----------------SEADGSDAVVDVEAVGEMREAVDL 131
           S  K   +VG++ + +E Y                  E D   ++VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176

Query: 132 KEMK------KGIEG-VKNFALFRQPRLSVVPVAKEIWEKICEL 142
           +E+K      K   G +K+  LF + RLSV P+ +E ++ I  L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of Lcy11g004260 vs. ExPASy Swiss-Prot
Match: Q90679 (Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-12
Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 12  YWLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYH 71
           +WLLK+EP          ++S  D  A   +T  W+GV+N QA+  L++MKLG   FFYH
Sbjct: 73  HWLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYH 132

Query: 72  SGAKARRVVGVVAVAREWY---SEADGSD--------------AVVDVEAVGEMREAVDL 131
           S  K   +VG+V + +E Y   ++ D  D              ++VDV+ V   +  + L
Sbjct: 133 SNCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPL 192

Query: 132 KEMK------KGIEG-VKNFALFRQPRLSVVPVAKEIWEKICEL 142
            E+K      K   G +KN  LF + RLS+ P+ +E ++ +  L
Sbjct: 193 SEIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236

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BLAST of Lcy11g004260 vs. ExPASy Swiss-Prot
Match: Q9P016 (Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 0


Query: 12  YWLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYH 71
           +WL+K+EP          ++S  D  A   +T  WDGV+N QA+  L++MKLG+  FFYH
Sbjct: 56  HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 115

Query: 72  SGAKARRVVGVVAVAREWY-----------------SEADGSDAVVDVEAVGEMREAVDL 131
           S  K   + G++ + +E Y                  E +   ++VDV+ V  M+  + L
Sbjct: 116 SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 175

Query: 132 KEMK------KGIEG-VKNFALFRQPRLSVVPVAKEIWEKICEL 142
            E+K      K   G +KN  LF + RLS+ P+ +E ++ +  L
Sbjct: 176 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219

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BLAST of Lcy11g004260 vs. ExPASy Swiss-Prot
Match: Q6P3E0 (Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 55/164 (33.54%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 12  YWLLKTEP---------AEWSWAD-QAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFYH 71
           YWL+K+EP          ++S  D QA     T WDGV+N QA   L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNFLRAMKLEDEAFFYH 116

Query: 72  SGAKARRVVGVVAVAREWY-----------------SEADGSDAVVDVEAVGEMREAVDL 131
           S  K   +VG++ + +E Y                  E +   ++VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSMVDVQFVRMMKRFISL 176

Query: 132 KEMK------KGIEG-VKNFALFRQPRLSVVPVAKEIWEKICEL 142
            E+K      K   G +K+  LF + RLSV P+ +E ++ I  L
Sbjct: 177 DELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of Lcy11g004260 vs. ExPASy Swiss-Prot
Match: Q6PFL8 (Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-10
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 13  WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYHS 72
           WL+K+EP          ++   D  A   +T  WDGV+N QA+  ++ MK+G   FFYHS
Sbjct: 63  WLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGVRNYQARNFMREMKVGQQAFFYHS 122

Query: 73  GAKARRVVGVVAVAREWY----------------SEADGSD-AVVDVEAVGEMREAVDLK 132
             K   + G++ + +E Y                S+AD     +VDV+    ++  + L 
Sbjct: 123 NCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKADNPKWHMVDVQFERMVKRFIPLA 182

Query: 133 EMKK-----GIEG--VKNFALFRQPRLSVVPVAKEIWEKICEL 142
           E+KK      ++G  +K+ ALF + RLSV P+  E +E +  L
Sbjct: 183 ELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEFEFVLSL 225

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BLAST of Lcy11g004260 vs. ExPASy TrEMBL
Match: A0A6J1FML1 (thymocyte nuclear protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447187 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77
Identity = 144/157 (91.72%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA AAAGDKKQ+WLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARR+VGVV+VAREWY E DG DAVVDVEAVGEMREAVDLKEMKKGIEG+K+FALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIWEKICELGGGFEGDGT+  HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157

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BLAST of Lcy11g004260 vs. ExPASy TrEMBL
Match: A0A6J1JS35 (thymocyte nuclear protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111489276 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.4e-75
Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA AA GDKKQ+WLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGD CFFY
Sbjct: 1   MADAAVGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDHCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARR+VGVV+VAREWYSE DG D VVDVE VGEMRE VDLKEMKKGIEG+K+FALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYSEGDGGDGVVDVEEVGEMREPVDLKEMKKGIEGMKDFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIWEKICELGGGFEGDGT+  HG+E
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGNE 157

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BLAST of Lcy11g004260 vs. ExPASy TrEMBL
Match: A0A5D3E131 (Thymocyte nuclear protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00410 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA+  AGDK+QYWLLKTEPAEWSWADQAAN GR+KWDGVKNKQAQKHLKSMKLGD CFFY
Sbjct: 1   MANPVAGDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARRVVGVVAVAREWYS  +  + VVDVEAVGEMRE VDLKEMKKG+EG+KNFALF
Sbjct: 61  HSGAKARRVVGVVAVAREWYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIW+KICELGGGFEGDGTEGGHGS+
Sbjct: 121 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSD 156

[Close]

BLAST of Lcy11g004260 vs. ExPASy TrEMBL
Match: E5GBH2 (EVE domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA+  AGDK+QYWLLKTEPAEWSWADQAAN GR+KWDGVKNKQAQKHLKSMKLGD CFFY
Sbjct: 46  MANPVAGDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFY 105

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARRVVGVVAVAREWYS  +  + VVDVEAVGEMRE VDLKEMKKG+EG+KNFALF
Sbjct: 106 HSGAKARRVVGVVAVAREWYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 165

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIW+KICELGGGFEGDGTEGGHGS+
Sbjct: 166 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSD 201

[Close]

BLAST of Lcy11g004260 vs. ExPASy TrEMBL
Match: A0A1S4E0I6 (thymocyte nuclear protein 1 OS=Cucumis melo OX=3656 GN=LOC103494826 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA+  AGDK+QYWLLKTEPAEWSWADQAAN GR+KWDGVKNKQAQKHLKSMKLGD CFFY
Sbjct: 46  MANPVAGDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFY 105

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARRVVGVVAVAREWYS  +  + VVDVEAVGEMRE VDLKEMKKG+EG+KNFALF
Sbjct: 106 HSGAKARRVVGVVAVAREWYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 165

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIW+KICELGGGFEGDGTEGGHGS+
Sbjct: 166 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSD 201

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BLAST of Lcy11g004260 vs. NCBI nr
Match: KAG6600275.1 (Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.3 bits (765), Expect = 2.0e-77
Identity = 145/157 (92.36%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA AAAGDKKQ+WLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARR+VGVV+VAREWYSE DG DAVVDVEAVGEMREAVDLKEMKKGIEG+K+FALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIWEKICELGGGFEGDGT+  HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157

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BLAST of Lcy11g004260 vs. NCBI nr
Match: KAG7030934.1 (Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 144/157 (91.72%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA AAAGDKKQ+WLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARR+VGV++VAREWYSE DG DAVVDVEAVGEMREAVDLKEMKKGIEG+K+FALF
Sbjct: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIWEKICELGGGFEGDGT+  HGSE
Sbjct: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 302

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BLAST of Lcy11g004260 vs. NCBI nr
Match: XP_023530564.1 (thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 4.4e-77
Identity = 144/157 (91.72%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA AA GDKKQ+WLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY
Sbjct: 1   MAGAAVGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARR+VGVV+VAREWYSE DG DAVVDVEAVGEMRE VDLKEMKKGIEG+K+FALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYSEGDGGDAVVDVEAVGEMREPVDLKEMKKGIEGMKDFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIWEKICELGGGFEGDGT+  HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157

[Close]

BLAST of Lcy11g004260 vs. NCBI nr
Match: XP_022941981.1 (thymocyte nuclear protein 1 [Cucurbita moschata])

HSP 1 Score: 297.0 bits (759), Expect = 9.8e-77
Identity = 144/157 (91.72%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA AAAGDKKQ+WLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARR+VGVV+VAREWY E DG DAVVDVEAVGEMREAVDLKEMKKGIEG+K+FALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           RQPRLSVVPVAKEIWEKICELGGGFEGDGT+  HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157

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BLAST of Lcy11g004260 vs. NCBI nr
Match: XP_038905606.1 (thymocyte nuclear protein 1 [Benincasa hispida])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 145/158 (91.77%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MASAAAGDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
           MA   AGD+KQYWLLKTEPAEWSWADQAAN GRTKWDGVKNKQAQKHLKSMKLGDLCFFY
Sbjct: 1   MAKDVAGDRKQYWLLKTEPAEWSWADQAANDGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60

Query: 61  HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGIEGVKNFALF 120
           HSGAKARRVVGVVAVAREWYS AD  D VVDVEAVGEMRE VDLKEMKKG+EG+KNFALF
Sbjct: 61  HSGAKARRVVGVVAVAREWYS-ADDDDVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 120

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSEG 159
           RQPRLSVVPVAKEIW+KICELGGGFEGDGTEGGHGSEG
Sbjct: 121 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSEG 157

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BLAST of Lcy11g004260 vs. TAIR 10
Match: AT2G14660.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2761 Blast hits to 2761 proteins in 686 species: Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants - 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink). )

HSP 1 Score: 204.5 bits (519), Expect = 6.2e-53
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 7   GDKKQYWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFYHSGAKA 66
           G  K+YWLLKTEP EWSW+DQ +NGG +KWDGVKNKQAQK+LKSM LGDLCFFYHSG K+
Sbjct: 2   GKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTKS 61

Query: 67  RRVVGVVAVAREWYS-EADG--SDAVVDVEAVGEMREAVDLKEMKKGIEGV--KNFALFR 126
           R VVGVV V+REWY+ +A+G   +  VDV+A+GEMR+ VDLKEM KG +G+  K F LFR
Sbjct: 62  RCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEM-KGDKGIITKGFVLFR 121

Query: 127 QPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
           QPRLSVVPV +++W  ICELG GF GDG E    S+
Sbjct: 122 QPRLSVVPVEEDVWNMICELGNGFCGDGKEDCESSD 156

The following BLAST results are available for this feature:

BLAST of Lcy11g004260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91YJ3	6.1e-13	33.54	Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1	[more]
Q90679	3.9e-12	32.32	Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1	[more]
Q9P016	5.2e-12	31.10	Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1	[more]
Q6P3E0	5.2e-12	33.54	Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1	[more]
Q6PFL8	6.3e-10	30.67	Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1	[more]

BLAST of Lcy11g004260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FML1	4.8e-77	91.72	thymocyte nuclear protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447187 PE=4 S...	[more]
A0A6J1JS35	3.4e-75	89.17	thymocyte nuclear protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111489276 PE=4 SV=...	[more]
A0A5D3E131	2.4e-73	87.90	Thymocyte nuclear protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
E5GBH2	2.4e-73	87.90	EVE domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S4E0I6	2.4e-73	87.90	thymocyte nuclear protein 1 OS=Cucumis melo OX=3656 GN=LOC103494826 PE=4 SV=1	[more]

BLAST of Lcy11g004260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600275.1	2.0e-77	92.36	Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7030934.1	2.6e-77	91.72	Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023530564.1	4.4e-77	91.72	thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022941981.1	9.8e-77	91.72	thymocyte nuclear protein 1 [Cucurbita moschata]	[more]
XP_038905606.1	4.9e-76	91.77	thymocyte nuclear protein 1 [Benincasa hispida]	[more]

BLAST of Lcy11g004260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14660.1	6.2e-53	66.67	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.590.10	ph1033 like domains	coord: 9..151 e-value: 2.2E-42 score: 146.4
None	No IPR available	PANTHER	PTHR14087	THYMOCYTE NUCLEAR PROTEIN 1	coord: 6..149
IPR002740	EVE domain	PFAM	PF01878	EVE	coord: 11..141 e-value: 4.6E-38 score: 130.5
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 9..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004260.1	Lcy11g004260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity