Lcy11g004170 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004170
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	agamous-like MADS-box protein AGL62
Location	Chr11: 4023781 .. 4024588 (-)
RNA-Seq Expression	Lcy11g004170
Synteny	Lcy11g004170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTGACTCAAGTGTTGAACCAGTTAGAGATGGAGCGAAAGCGGGGTGAAGAGTTAAACAAACTGCGAAAGGCAAGCCAGGTAATAAATCACCGCTAAACTAAAAAACTTTAATAAGATAGACTTTTATTCGCACATGTTAATTATTAACATGAGTCATAAAATAATATTACAAAGTTTCAAATTACATAGACTTACTAGTGAATTTAATATATATATTCTTGAAATTTAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAACGGCAATCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGTGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

mRNA sequence

ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTGACTCAAGTGTTGAACCAGTTAGAGATGGAGCGAAAGCGGGGTGAAGAGTTAAACAAACTGCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAACGGCAATCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGTGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Coding sequence (CDS)

ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTGACTCAAGTGTTGAACCAGTTAGAGATGGAGCGAAAGCGGGGTGAAGAGTTAAACAAACTGCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAACGGCAATCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGTGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Protein sequence

MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQFFPTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF

Homology

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BLAST of Lcy11g004170 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.8e-51
Identity = 109/189 (57.67%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+QLE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLRKASQA-QCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQ 180
           EL K+R+ ++A   WWE P+EEL + QLE  K +L+ LKK VT +A R        N P 
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF----QANVPN 181

Query: 181 FFPTPTPTN 187
           F+   +  N
Sbjct: 182 FYVGSSSNN 186

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BLAST of Lcy11g004170 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-39
Identity = 87/161 (54.04%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL      A   ELN QLT +L+++E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQL--QGSPAASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKASQAQC---WWELPIEELEMHQLEQLKASLDELKKNV 160
           ++RK S  +    WWE P+EE+ M QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

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BLAST of Lcy11g004170 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 75/166 (45.18%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL- 121
           GHP V  L++  + R            E+     ++ LN  LT+V+ + E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRI 167
              R+   A+ WW     EL + Q   +K  L+ LKK V ++  ++
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

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BLAST of Lcy11g004170 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.4e-29
Identity = 79/180 (43.89%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERK-RGEE 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V  ++E E+K +   
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 LNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQFF 180
               R+   A+ WW     EL + Q   +   L +LKK V ++A +++ QT+    P F+
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN----PNFY 175

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BLAST of Lcy11g004170 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-19
Identity = 60/162 (37.04%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 6   GRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPC 65
           GR+K++M  + + +  QVTFSKRR+GLFKKASEL TLC AE+ I+VFSPG K FS+G P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEE-LNKLR 125
           ++++ ERF+       SG  +    +R   ++ L+ +L  +  ++E E++RGE+   KL 
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYR-PKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 121

Query: 126 KASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRI 167
            A   +  ++  IE L + +L + K  L  +   +  Q + +
Sbjct: 122 SAGDER--FKESIETLTLDELNEYKDRLQTVHGRIEGQVNHL 160

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BLAST of Lcy11g004170 vs. ExPASy TrEMBL
Match: A0A6J1FPY5 (agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC111447736 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKA+Q QCWWELPIEE+E+HQLEQLK SLDELKKNVTQQADRILIQTSNGN PPQFF
Sbjct: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
           PTPTP NPNQQGGV+VVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 PTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. ExPASy TrEMBL
Match: A0A6J1IK72 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111476097 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.1e-111
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKA+Q QCWWELPIEE+E++QLEQLK SLDELKKNV QQADRILIQTSNGN PPQFF
Sbjct: 121 NKLRKANQPQCWWELPIEEMELYQLEQLKLSLDELKKNVMQQADRILIQTSNGNPPPQFF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
           PTPTP NPNQQGGV+VVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 PTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. ExPASy TrEMBL
Match: A0A6J1D5B6 (agamous-like MADS-box protein AGL62 OS=Momordica charantia OX=3673 GN=LOC111017745 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.6e-110
Identity = 206/219 (94.06%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELN+QLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNSQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKASQAQ WWELPIEE+EM+QLEQLK SL+ELKKNVTQ ADRIL+QTSNGN PPQ+F
Sbjct: 121 NKLRKASQAQFWWELPIEEMEMNQLEQLKTSLEELKKNVTQHADRILVQTSNGNPPPQYF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
           PTP+P NPNQQGGVFVVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 PTPSPANPNQQGGVFVVDPKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. ExPASy TrEMBL
Match: A0A5A7TM75 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00310 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106
Identity = 208/226 (92.04%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQT-SNGNPPQ-- 180
           NKLRKASQAQCWWELPIEE+EMHQLEQLKASLDELKKNVTQQADRILIQT SN NPP   
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPT--PTPT---NPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
            FPT  PTPT    PNQQ G+FVVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226

[Close]

BLAST of Lcy11g004170 vs. ExPASy TrEMBL
Match: A0A1S3BYP6 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106
Identity = 208/226 (92.04%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQT-SNGNPPQ-- 180
           NKLRKASQAQCWWELPIEE+EMHQLEQLKASLDELKKNVTQQADRILIQT SN NPP   
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPT--PTPT---NPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
            FPT  PTPT    PNQQ G+FVVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226

[Close]

BLAST of Lcy11g004170 vs. NCBI nr
Match: XP_022942821.1 (agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.4e-112
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKA+Q QCWWELPIEE+E+HQLEQLK SLDELKKNVTQQADRILIQTSNGN PPQFF
Sbjct: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
           PTPTP NPNQQGGV+VVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 PTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. NCBI nr
Match: KAG7030923.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 208/219 (94.98%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKA+Q QCWWELPIEE+E+HQLEQLK SLDELKKNVTQQADRILIQTSNGN PPQFF
Sbjct: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
            TPTP NPNQQGGV+VVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 STPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. NCBI nr
Match: XP_022975753.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 410.6 bits (1054), Expect = 8.4e-111
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKA+Q QCWWELPIEE+E++QLEQLK SLDELKKNV QQADRILIQTSNGN PPQFF
Sbjct: 121 NKLRKANQPQCWWELPIEEMELYQLEQLKLSLDELKKNVMQQADRILIQTSNGNPPPQFF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
           PTPTP NPNQQGGV+VVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 PTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. NCBI nr
Match: XP_022149295.1 (agamous-like MADS-box protein AGL62 [Momordica charantia])

HSP 1 Score: 407.9 bits (1047), Expect = 5.4e-110
Identity = 206/219 (94.06%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELN+QLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNSQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGN-PPQFF 180
           NKLRKASQAQ WWELPIEE+EM+QLEQLK SL+ELKKNVTQ ADRIL+QTSNGN PPQ+F
Sbjct: 121 NKLRKASQAQFWWELPIEEMEMNQLEQLKTSLEELKKNVTQHADRILVQTSNGNPPPQYF 180

Query: 181 PTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
           PTP+P NPNQQGGVFVVD KNMISHLPYNYGSYGSRGFF
Sbjct: 181 PTPSPANPNQQGGVFVVDPKNMISHLPYNYGSYGSRGFF 219

[Close]

BLAST of Lcy11g004170 vs. NCBI nr
Match: XP_008454428.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo] >KAA0044310.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 8.1e-106
Identity = 208/226 (92.04%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQT-SNGNPPQ-- 180
           NKLRKASQAQCWWELPIEE+EMHQLEQLKASLDELKKNVTQQADRILIQT SN NPP   
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPT--PTPT---NPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
            FPT  PTPT    PNQQ G+FVVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226

[Close]

BLAST of Lcy11g004170 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 201.8 bits (512), Expect = 5.5e-52
Identity = 109/189 (57.67%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+QLE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLRKASQA-QCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQ 180
           EL K+R+ ++A   WWE P+EEL + QLE  K +L+ LKK VT +A R        N P 
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF----QANVPN 181

Query: 181 FFPTPTPTN 187
           F+   +  N
Sbjct: 182 FYVGSSSNN 186

[Close]

BLAST of Lcy11g004170 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 162.2 bits (409), Expect = 4.9e-40
Identity = 87/161 (54.04%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL      A   ELN QLT +L+++E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQL--QGSPAASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKASQAQC---WWELPIEELEMHQLEQLKASLDELKKNV 160
           ++RK S  +    WWE P+EE+ M QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of Lcy11g004170 vs. TAIR 10
Match: AT4G36590.1 (MADS-box transcription factor family protein )

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-36
Identity = 83/168 (49.40%), Postives = 117/168 (69.64%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           +R ++GRQK+EM KM NESNLQVTFSKRR GLFKKASELCTL GAEI +IVFSPG KVFS
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPS-----SGTLQLIEAHRNANVRELNAQLTQVLNQLEMERK 120
           FGHP V+ LI RF   N   +     +  LQL+E   + N++ LN  LT+VL   E E++
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQ 121

Query: 121 RGEELNKLRKA-SQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQ 163
           +   L+ L+++  Q   W+E  +++L+M++  QL ++L ++KK + ++
Sbjct: 122 KRMVLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVRE 169

[Close]

BLAST of Lcy11g004170 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 75/166 (45.18%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL- 121
           GHP V  L++  + R            E+     ++ LN  LT+V+ + E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 NKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRI 167
              R+   A+ WW     EL + Q   +K  L+ LKK V ++  ++
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

[Close]

BLAST of Lcy11g004170 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-30
Identity = 79/180 (43.89%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERK-RGEE 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V  ++E E+K +   
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 LNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQFF 180
               R+   A+ WW     EL + Q   +   L +LKK V ++A +++ QT+    P F+
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN----PNFY 175

The following BLAST results are available for this feature:

BLAST of Lcy11g004170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	7.8e-51	57.67	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	6.8e-39	54.04	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9LMM8	1.7e-29	45.18	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O80807	8.4e-29	43.89	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
O64703	6.0e-19	37.04	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]

BLAST of Lcy11g004170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPY5	1.7e-112	95.43	agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC11144773...	[more]
A0A6J1IK72	4.1e-111	94.52	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111476097 ...	[more]
A0A6J1D5B6	2.6e-110	94.06	agamous-like MADS-box protein AGL62 OS=Momordica charantia OX=3673 GN=LOC1110177...	[more]
A0A5A7TM75	3.9e-106	92.04	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BYP6	3.9e-106	92.04	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4...	[more]

BLAST of Lcy11g004170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942821.1	3.4e-112	95.43	agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous...	[more]
KAG7030923.1	2.9e-111	94.98	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022975753.1	8.4e-111	94.52	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]
XP_022149295.1	5.4e-110	94.06	agamous-like MADS-box protein AGL62 [Momordica charantia]	[more]
XP_008454428.1	8.1e-106	92.04	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo] >KAA0044310.1 agam...	[more]

BLAST of Lcy11g004170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	5.5e-52	57.67	AGAMOUS-like 62	[more]
AT2G24840.1	4.9e-40	54.04	AGAMOUS-like 61	[more]
AT4G36590.1	9.5e-36	49.40	MADS-box transcription factor family protein	[more]
AT1G01530.1	1.2e-30	45.18	AGAMOUS-like 28	[more]
AT1G65360.1	5.9e-30	43.89	AGAMOUS-like 23	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 138..165
None	No IPR available	COILS	Coil	Coil	coord: 93..120
None	No IPR available	GENE3D	6.10.140.920		coord: 83..176 e-value: 1.2E-20 score: 75.8
None	No IPR available	PANTHER	PTHR11945:SF677	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	coord: 5..193
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 5..193
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 27..42 score: 67.1 coord: 7..27 score: 46.13 coord: 42..63 score: 41.44
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 5..64 e-value: 1.7E-30 score: 117.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 16..61 e-value: 3.4E-24 score: 84.1
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 5..65 score: 23.548571
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 17..81 e-value: 3.0E-27 score: 96.2
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 6..78
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 6..73 e-value: 6.58381E-34 score: 114.572

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004170.1	Lcy11g004170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding