Lcy11g003220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g003220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Chr11: 3087411 .. 3089498 (-)
RNA-Seq Expression	Lcy11g003220
Synteny	Lcy11g003220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTGCTATCTCAGCCAGCTCATTGCCAAGATCATGCACTTCAAATCATGTCTCCAAGAAGAAACAACATGCTCATCAAGCCAGACCTGCCTATTCCTCAATGACGAAAAACCCGACCCCAGAGCTTACTATCATCGACGTTGGGGATCGGGACGGTATCGGCGCTGCTGAACGACATAGAAACGTTGCATCGGGTAGAGACGAGCTAGAGAAAGACACTGATGATGTTTGGAACCATGGAGAAAGGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATTTGAATATGTTTGTGAAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGCAGGTGAGTTACTGGATAACTCTATTAAAAAATATATTAAACGATTGATATTTATCGTAACCTATCAACTTCAAGTTTAACGTTGATTTAATATACGTCAAACATACATTTTTTTTTAAATTATGGTTTTAAAAAGTAAATATGTATATGGACAATGTTTGATCCTCTGCTAAAGTGAAATGGTATTATTAACAATTTTATCTTTGAATTATCCATTTCACTACTTAAATTGAACATGTTGATGGCAAATTAAAAGTTTGGATTTATGTTAATTCTACAATTAGAAGCAAAGAGGAGGAAGTTTCTTGAATTATATCCAGAAGCAGCTACAAATCAAGAACCAGTGATCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAGTCCTACCTCCCACAAGCTGAACTACTTAACGGTATTCAATCACGTCTACCTCTAGTTTGATAACCATTTTATTTTAACTTTTTTTTTTTTTTTTTTTTTAAAGAGCATTTTTATCTGTAAAATTGTTTAAAAGTGTCTAATATAGATGAATGAACTTTGAATTTTGTGTAATAAGTGTGTGAACTTTAAAAATGTCTAACAAATCCCTTAGGCCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGGTTTTTGAAAATTATGCTTGTTTTTTCCTAAATTCCCTACCATGACTTTCATCATTGTTAATGATCCAATTGAATTCCTAGTCAAATTCTAAAAACAAAAACAAGTTTTTAAAAACTACTTTTTTTTTTTGTTTTCAAAATTGGACTTGGTTTTTGAAAACAAAAAAGAATATTGATACTAAAACAAGAAAACTTATAGGTGGAAGTATGTGTGTATAGGCTTAATTTTCAAAAACTAAAAACCAAAAACCAAATGGTTATCAAATGAGGTCTTAGCTTTCAATTTTGTGTTTAACAGATCTCTGACATATTCAAAATTTTAAAAGATTAAGTAACCTATTAGATATAAATTTGAATTTTATGTCTAATAGGACTCTAAACTTTCAACTTTTTCTAGTAGGTTTGTAAATTTTTAAAAATATCAAAATATGTCAAGGACCTTAATTATTAGACACAAAATAAAAAATCCAGGGATCTATTGCACACAGAACTGAAAATTTAAAGAACAACTATTAGACATTTTAAAGTTCAAGGACATACTAGATACAAAATTGAAAGTTCAAAGACTTATTAGACACTTTTTAAAGTTCGATGATCAAATAAACACAAATCTGTAAGTTTCAAGGCTAGTAATTTAACCTTTTTATAATCCATATATTATAAGAGGTAGAATTTTGAACAATTCTTTATGAAAATTTCTAATGTTTTAACCAATTGAACTACGTCGGATTTTGGGTTTTGTTATGATAGTAGATATATATATATATATGTGTGTGTTGTAGGTAGGGCAGCAATGATAGGGTTCTTCATGGGCTATGTAGTGGATGCATTAACAGGAATTGGAATAGTTGGCCAAAGTGGGAATTTCATATGCAAATCAGCTCTTTTTGTAACAGTCATTGGTGTGTTGCTGTTTAGGCAAACTGAAGATATTGAGGGCTTAAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATGAAACGTCGTAATGAAGAAAAAATATTTCAGTCTCGTTTGATAACAATTTTGTTTTTTTGTTTTTATATTTTTGAAAATGTAGACTATCGTTTAACTAA

mRNA sequence

ATGGCTTCAATTGCTATCTCAGCCAGCTCATTGCCAAGATCATGCACTTCAAATCATGTCTCCAAGAAGAAACAACATGCTCATCAAGCCAGACCTGCCTATTCCTCAATGACGAAAAACCCGACCCCAGAGCTTACTATCATCGACGTTGGGGATCGGGACGGTATCGGCGCTGCTGAACGACATAGAAACGTTGCATCGGGTAGAGACGAGCTAGAGAAAGACACTGATGATGTTTGGAACCATGGAGAAAGGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATTTGAATATGTTTGTGAAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTATATCCAGAAGCAGCTACAAATCAAGAACCAGTGATCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAGTCCTACCTCCCACAAGCTGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGGCTATGTAGTGGATGCATTAACAGGAATTGGAATAGTTGGCCAAAGTGGGAATTTCATATGCAAATCAGCTCTTTTTGTAACAGTCATTGGTGTGTTGCTGTTTAGGCAAACTGAAGATATTGAGGGCTTAAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATGAAACGTCGTAATGAAGAAAAAATATTTCAGTCTCGTTTGATAACAATTTTGTTTTTTTGTTTTTATATTTTTGAAAATGTAGACTATCGTTTAACTAA

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCAGCCAGCTCATTGCCAAGATCATGCACTTCAAATCATGTCTCCAAGAAGAAACAACATGCTCATCAAGCCAGACCTGCCTATTCCTCAATGACGAAAAACCCGACCCCAGAGCTTACTATCATCGACGTTGGGGATCGGGACGGTATCGGCGCTGCTGAACGACATAGAAACGTTGCATCGGGTAGAGACGAGCTAGAGAAAGACACTGATGATGTTTGGAACCATGGAGAAAGGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATTTGAATATGTTTGTGAAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTATATCCAGAAGCAGCTACAAATCAAGAACCAGTGATCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAGTCCTACCTCCCACAAGCTGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGGCTATGTAGTGGATGCATTAACAGGAATTGGAATAGTTGGCCAAAGTGGGAATTTCATATGCAAATCAGCTCTTTTTGTAACAGTCATTGGTGTGTTGCTGTTTAGGCAAACTGAAGATATTGAGGGCTTAAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATGAAACGTCGTAA

Protein sequence

MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPELTIIDVGDRDGIGAAERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALTGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNETS

Homology

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BLAST of Lcy11g003220 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-56
Identity = 105/178 (58.99%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 63  RNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKF 122
           +NVA   +E+ K T+ V     +F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+
Sbjct: 84  KNVAVEGEEM-KTTESV----VKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKW 143

Query: 123 LELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALTGIG 182
           LE  PE  +N EPV+F +SIIPWWAW+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G
Sbjct: 144 LEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVG 203

Query: 183 IVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNETS 241
           +V Q GNF CK+ LFV V GVL  R+ ED++ L+ L +E T YDKQWQA+W+N ++ S
Sbjct: 204 LVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDES 256

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BLAST of Lcy11g003220 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-52
Identity = 105/236 (44.49%), Postives = 150/236 (63.56%), Query Frame = 0


Query: 11  LPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPEL------TIIDVGDRDGIGAAERHRN 70
           +P+  TS   +K+       R +  + T +P  E+       + +V  +    ++    N
Sbjct: 22  IPKISTSLLSTKRFSLISVPRASSDNGTTSPVVEIPKPASVAVEEVPVKSPAESSSASEN 81

Query: 71  VASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLE 130
            A G +  +  T+ V     ++ + +W NGTWDL  F K+GK DW+ VIV+EAKRRK+LE
Sbjct: 82  GAVGGEATDSSTETV----IKYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLE 141

Query: 131 LYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALTGIGIV 190
             PE  +N E V+F +SIIPWWAW+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G+V
Sbjct: 142 DNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLV 201

Query: 191 GQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNETS 241
            Q GNF CK+ LFV V GVL  R+ ED++ L+ L +E T YDKQWQA+W+  + ++
Sbjct: 202 DQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTLYDKQWQAAWKEPDSST 253

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BLAST of Lcy11g003220 vs. ExPASy TrEMBL
Match: A0A6J1JAE2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482711 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.2e-109
Identity = 208/242 (85.95%), Postives = 219/242 (90.50%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPEL-TIIDVGDRD-GIGA 60
           MASIAISA S  RSCTSNHVSKK+QHA QARP YSSMTKNPTPEL    DVG+RD    A
Sbjct: 47  MASIAISA-SFRRSCTSNHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDA 106

Query: 61  AERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120
            +RH NVAS  D+LE+DTDD+ NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK
Sbjct: 107 PKRHGNVASATDKLEEDTDDM-NHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 166

Query: 121 RRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDAL 180
           RRKFLELYPE ATNQEPV+FRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFM Y+VDAL
Sbjct: 167 RRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 226

Query: 181 TGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNE 240
           TGIGIVGQSGNFI K+ALFVTVIGVLLFRQT+DIEGLRKLAEEATFYDKQWQASWQNQNE
Sbjct: 227 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 286

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BLAST of Lcy11g003220 vs. ExPASy TrEMBL
Match: A0A6J1E3P1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430544 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.8e-107
Identity = 205/241 (85.06%), Postives = 216/241 (89.63%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPELTIID-VGDRDGIGAA 60
           MASIAISA S PRSCTSNHVS K+Q   QARP YSSMTKNPTPEL     VGDRD + A 
Sbjct: 1   MASIAISA-SFPRSCTSNHVSNKQQR-RQARPTYSSMTKNPTPELIKTPYVGDRDALDAP 60

Query: 61  ERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
           +RH NVAS  D+LE+DTDD+ NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 61  KRHGNVASATDKLEEDTDDM-NHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120

Query: 121 RKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALT 180
           RKFLELYPE ATN EPV+FRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFM Y+VDALT
Sbjct: 121 RKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 180

Query: 181 GIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNET 240
           GIGIVGQSGNFI K+ALFVTVIGVLLFRQT+DIEGLRKLAEEATFYDKQWQASWQNQNE 
Sbjct: 181 GIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQNQNEN 238

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BLAST of Lcy11g003220 vs. ExPASy TrEMBL
Match: A0A5D3CYT8 (Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00310 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.3e-98
Identity = 189/243 (77.78%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVS--KKKQHAHQARPAYSSMTKNPTPE-LTIIDVGDRDGIG 60
           MASIAISA SLPR+   NHVS  KK+QHAH A+PAYSSMTKNPTP+ ++ +DVG+RD   
Sbjct: 1   MASIAISA-SLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  AAERHR---NVASGR-DELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVI 120
           A ++H    NVAS    ++E+D DD  N+GERFTD+RWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 VAEAKRRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGY 180
           V EAKRRKFLEL+PEAATN+EPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFMGY
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 VVDALTGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASW 237
            VDALTGIGIVGQSGNFICK+ALF+TVIGVLLFRQ+ED+E LR +AEEATFYDKQWQ+SW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

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BLAST of Lcy11g003220 vs. ExPASy TrEMBL
Match: A0A1S3BXB8 (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.3e-98
Identity = 189/243 (77.78%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVS--KKKQHAHQARPAYSSMTKNPTPE-LTIIDVGDRDGIG 60
           MASIAISA SLPR+   NHVS  KK+QHAH A+PAYSSMTKNPTP+ ++ +DVG+RD   
Sbjct: 1   MASIAISA-SLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  AAERHR---NVASGR-DELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVI 120
           A ++H    NVAS    ++E+D DD  N+GERFTD+RWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 VAEAKRRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGY 180
           V EAKRRKFLEL+PEAATN+EPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFMGY
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 VVDALTGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASW 237
            VDALTGIGIVGQSGNFICK+ALF+TVIGVLLFRQ+ED+E LR +AEEATFYDKQWQ+SW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

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BLAST of Lcy11g003220 vs. ExPASy TrEMBL
Match: A0A0A0KUF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.5e-95
Identity = 185/239 (77.41%), Postives = 210/239 (87.87%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVS-KKKQHAHQARPAYSSMTKNPTPE-LTIIDVGDRDGIGA 60
           MASIAISA SLPR+  SNHVS KKKQ  H A+P YSS TKNPTP+ ++ +DV +RD  GA
Sbjct: 1   MASIAISA-SLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDD-GA 60

Query: 61  AERHR--NVASGRDELEKDTDDVW-NHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVA 120
           A+++R  N AS   + E+D +D W N+GERFTD+RWKNGTWDLNMFV+NGKMDWEGVIV 
Sbjct: 61  AQQYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVE 120

Query: 121 EAKRRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVV 180
           EAKRRKFLE++PEAATNQEPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFMGY V
Sbjct: 121 EAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAV 180

Query: 181 DALTGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQ 235
           DALTG+GIVGQSGNFICK+ALF+TVIGVLLFRQ+EDIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 DALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237

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BLAST of Lcy11g003220 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.9 bits (1047), Expect = 6.0e-110
Identity = 207/241 (85.89%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPEL-TIIDVGDRDGIGAA 60
           MASIAISA S PRSCTSNHVSK +QHA QARP +SSMTKNPTPEL    DVGDRD   A 
Sbjct: 1   MASIAISA-SFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAP 60

Query: 61  ERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
           +RH NVAS  D+LE+DTDD+ NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 61  KRHGNVASATDKLEEDTDDL-NHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120

Query: 121 RKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALT 180
           RKFLELYPE ATN EPV+FRSSIIPWWAWLT+SYLPQAELLNGRAAMIGFFM Y+VDALT
Sbjct: 121 RKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALT 180

Query: 181 GIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNET 240
           GIGIVGQSGNFI KSALFVTVIGVLLFRQT+DIEGLRKLAEEATFYDKQWQASWQNQNE 
Sbjct: 181 GIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNEN 239

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BLAST of Lcy11g003220 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 404.1 bits (1037), Expect = 8.7e-109
Identity = 208/242 (85.95%), Postives = 219/242 (90.50%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPEL-TIIDVGDRD-GIGA 60
           MASIAISA S  RSCTSNHVSKK+QHA QARP YSSMTKNPTPEL    DVG+RD    A
Sbjct: 47  MASIAISA-SFRRSCTSNHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDA 106

Query: 61  AERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120
            +RH NVAS  D+LE+DTDD+ NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK
Sbjct: 107 PKRHGNVASATDKLEEDTDDM-NHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 166

Query: 121 RRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDAL 180
           RRKFLELYPE ATNQEPV+FRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFM Y+VDAL
Sbjct: 167 RRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 226

Query: 181 TGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNE 240
           TGIGIVGQSGNFI K+ALFVTVIGVLLFRQT+DIEGLRKLAEEATFYDKQWQASWQNQNE
Sbjct: 227 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 286

[Close]

BLAST of Lcy11g003220 vs. NCBI nr
Match: XP_022922577.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 398.7 bits (1023), Expect = 3.6e-107
Identity = 205/241 (85.06%), Postives = 216/241 (89.63%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPELTIID-VGDRDGIGAA 60
           MASIAISA S PRSCTSNHVS K+Q   QARP YSSMTKNPTPEL     VGDRD + A 
Sbjct: 1   MASIAISA-SFPRSCTSNHVSNKQQR-RQARPTYSSMTKNPTPELIKTPYVGDRDALDAP 60

Query: 61  ERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
           +RH NVAS  D+LE+DTDD+ NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 61  KRHGNVASATDKLEEDTDDM-NHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120

Query: 121 RKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALT 180
           RKFLELYPE ATN EPV+FRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFM Y+VDALT
Sbjct: 121 RKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 180

Query: 181 GIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNET 240
           GIGIVGQSGNFI K+ALFVTVIGVLLFRQT+DIEGLRKLAEEATFYDKQWQASWQNQNE 
Sbjct: 181 GIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQNQNEN 238

[Close]

BLAST of Lcy11g003220 vs. NCBI nr
Match: XP_038875279.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-99
Identity = 189/239 (79.08%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPE-LTIIDVGDRDGIGAA 60
           MASIAISA SLPR+ TSNHV  K               KNPT + ++ +DVGDRDG+GA 
Sbjct: 1   MASIAISA-SLPRASTSNHVFVK---------------KNPTQKVISTLDVGDRDGVGAV 60

Query: 61  ERHRNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
           ERH NVAS R+++E+D DD WNHGE+FTD+RWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 61  ERHGNVASAREKVEEDNDD-WNHGEKFTDKRWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120

Query: 121 RKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALT 180
           RKFLELYPEAATNQEPV+FRSS+IPWWAWLTKSYLPQAELLNGRAAMIGFFM Y+VDALT
Sbjct: 121 RKFLELYPEAATNQEPVLFRSSVIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYIVDALT 180

Query: 181 GIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNE 239
           GIGIVGQSGNFICK+ALF TVIGVLLFRQTEDIE LR +AEEAT YDKQWQ SWQNQNE
Sbjct: 181 GIGIVGQSGNFICKAALFFTVIGVLLFRQTEDIESLRNIAEEATLYDKQWQTSWQNQNE 222

[Close]

BLAST of Lcy11g003220 vs. NCBI nr
Match: XP_008453842.1 (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa] >TYK16897.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 9.0e-98
Identity = 189/243 (77.78%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MASIAISASSLPRSCTSNHVS--KKKQHAHQARPAYSSMTKNPTPE-LTIIDVGDRDGIG 60
           MASIAISA SLPR+   NHVS  KK+QHAH A+PAYSSMTKNPTP+ ++ +DVG+RD   
Sbjct: 1   MASIAISA-SLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  AAERHR---NVASGR-DELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVI 120
           A ++H    NVAS    ++E+D DD  N+GERFTD+RWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 VAEAKRRKFLELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGY 180
           V EAKRRKFLEL+PEAATN+EPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFMGY
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 VVDALTGIGIVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASW 237
            VDALTGIGIVGQSGNFICK+ALF+TVIGVLLFRQ+ED+E LR +AEEATFYDKQWQ+SW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

[Close]

BLAST of Lcy11g003220 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-57
Identity = 105/178 (58.99%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 63  RNVASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKF 122
           +NVA   +E+ K T+ V     +F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+
Sbjct: 84  KNVAVEGEEM-KTTESV----VKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKW 143

Query: 123 LELYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALTGIG 182
           LE  PE  +N EPV+F +SIIPWWAW+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G
Sbjct: 144 LEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVG 203

Query: 183 IVGQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNETS 241
           +V Q GNF CK+ LFV V GVL  R+ ED++ L+ L +E T YDKQWQA+W+N ++ S
Sbjct: 204 LVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDES 256

[Close]

BLAST of Lcy11g003220 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 205.3 bits (521), Expect = 5.5e-53
Identity = 105/236 (44.49%), Postives = 150/236 (63.56%), Query Frame = 0


Query: 11  LPRSCTSNHVSKKKQHAHQARPAYSSMTKNPTPEL------TIIDVGDRDGIGAAERHRN 70
           +P+  TS   +K+       R +  + T +P  E+       + +V  +    ++    N
Sbjct: 22  IPKISTSLLSTKRFSLISVPRASSDNGTTSPVVEIPKPASVAVEEVPVKSPAESSSASEN 81

Query: 71  VASGRDELEKDTDDVWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLE 130
            A G +  +  T+ V     ++ + +W NGTWDL  F K+GK DW+ VIV+EAKRRK+LE
Sbjct: 82  GAVGGEATDSSTETV----IKYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLE 141

Query: 131 LYPEAATNQEPVIFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMGYVVDALTGIGIV 190
             PE  +N E V+F +SIIPWWAW+ + +LP+AELLNGRAAMIGFFM Y VD+LTG+G+V
Sbjct: 142 DNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLV 201

Query: 191 GQSGNFICKSALFVTVIGVLLFRQTEDIEGLRKLAEEATFYDKQWQASWQNQNETS 241
            Q GNF CK+ LFV V GVL  R+ ED++ L+ L +E T YDKQWQA+W+  + ++
Sbjct: 202 DQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTLYDKQWQAAWKEPDSST 253

The following BLAST results are available for this feature:

BLAST of Lcy11g003220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	3.0e-56	58.99	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	7.7e-52	44.49	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of Lcy11g003220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAE2	4.2e-109	85.95	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1E3P1	1.8e-107	85.06	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]
A0A5D3CYT8	4.3e-98	77.78	Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BXB8	4.3e-98	77.78	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]
A0A0A0KUF5	1.5e-95	77.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1	[more]

BLAST of Lcy11g003220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551912.1	6.0e-110	85.89	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]
XP_022984403.1	8.7e-109	85.95	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_022922577.1	3.6e-107	85.06	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc...	[more]
XP_038875279.1	1.3e-99	79.08	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_008453842.1	9.0e-98	77.78	PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chl...	[more]

BLAST of Lcy11g003220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	2.2e-57	58.99	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	5.5e-53	44.49	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 10..239
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 10..239
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 131..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g003220.1	Lcy11g003220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005634	nucleus