Lcy11g002430 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g002430
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	Chr11: 2258898 .. 2261726 (-)
RNA-Seq Expression	Lcy11g002430
Synteny	Lcy11g002430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACCTTTCCTTTTTTCTGGAGGGGGCGTGGGGGAATTTAGGAAGTTGAGGGGAGACAATGCAATTATGGAAACTTTCTACTGAAAGAGCAAAATAGATTTCATAATTCTTAACTGAATCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCACAAAACCCTATCATCTTCCCCACACACCTCTCGATTTCCCCTCAAAACGCAGATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCCAAAATTGTTGATGATGCTCCTCCAGTTGCGACCTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCGTCGTCTCAATCGACGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAGAGGGCATCGATCATTCGGCGCTCGCCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGACTTGGTGCGGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTACGAGTTCTTTTTCAGAATTTTGTTGATTGGAACCTGTGTATTTTGTGAAAGTTGATGTTGCGGTTTCCGTTTTCGACGGTGGAATTTTCTTTTTCTTGTCTGGGTTTCGAGTAATTTTGTTTTTGATCAGAGACGTGACAATAGTCAAACACCAATTCGAATAGGATTTTTCTTTAAGGCGTGGATGTAGAAGTTTGAAACCAAATTCTGAACAATTGGCGAACTGTGGAGAGAAATTACAATTTTGGTAAGGTGGTGGGTTGAGGTTCTAGTCAGGTTATCTGTTGAAATAAACTGAAAATGAGAAGCAGTTGACTTATGAAATGAAGAATATAATAATCTAGGGCCCCTTCATTTCGTGTTGTGAATAGCAGTGGCGGTTCTTCAATCACCATTCTCAGTCACTAAGTGCATATTTGGAGTGTTAATATGAGGCAACATTTCATAACCATTTATAACTAAGCTAATGTTATGCATAAATTTCTCTCAAGCTAAGAAATGTGGGACGAGTGTGGATGTACAGTGATGTTCTCATTGTATAGGTGTTTAGTGGGATAAGACACAGGCCTCTGACTTTCTACTAGTGGGAATATTGCCTTTCAAGGATATCTCTCCAGCCATTGTATATTCTTCAGTGAAAGAAAGTTGATCTTTAATGGTGGATTAGATTCTCCTTGTCCTCCTCTCCCCTGGCATGTGTACGCATGTGCTGGGGTAGCATCAATTTGGTGGTTGATTTGGCTTTCCAATACCAACCACTTATTGCAGGCTCTAGATTTTTCCTAACAAATATATTGCATAGATATCTTACGGTGCTTATTTATAAGAAATTCTGGTTAATGTGTAATGTACATAGCCTTCGCCCTTCCTTTTTGTGTAGGATTTATAAGATGCTTATGTTTCTGCTGGCCTTGTGATGATTAACTTCATGTGGAAGACCCTCAATTACTACTCTTGTTTAGAAGCATGCTTGCTATGCTATGTCACTGCTAATTTATACTCAATACTTTTTAGTGTTTCAGTAAAATGGGAATCCACTTATTGAACTTAACATGCAGTTATTCAAATCCTCTTCTCTACTTCTCTCTTTAGGAATGCTCACCTTTTCAGATTTTAGACAGATTCTCAGTTAGATTGTCATCCATTTCAAATTGTTCCTCTAATTAGTGGTTCTGCAGAATATCTTCCCAGCATTGACTTCCATTTGATATCCTTGAACCTTATGTAGCTGGATAAGATTGGGCAATGTCCATTATATTGTCTAAAAAGTTCTGATTGTTCAAAGCCTGTTCGTTAACTCTCAAGTTAAAGATATGGTTTTTACAAAAACCATTATTTTGGAACTTTCTTGATTAAAATATGTTGTCTATAGTTCAATGGTTTGACACTTTGGGCTTATATTTGCGATTGCAAAACAACAACATGCTTCATTTCTGGTTAATTCCACCATCAAACTAATAGAAAGTCATAGCTCTTTTAAGTTTTTTCATAGTTTCATGAGGATAATATGTAGTAAACTTCTTTCTATTTTTATACCGTTGAATTGTTTGATGGTTCTAAAGATGGGAATATTTTCATGCTTTTATTTCACTAGTACGAATATACGCTTGGTTTGACTGACTTTTCAGCACATTTTCAGGTTACAAAATTTGATGAATTCAATATCTATAGCTCATGTTTTCATTTCACTTCCACCACCACAACTAATTGGTTGATGTGCACCTGCAGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTCTCTTTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTCAAAGTATCTTCAGAATGAGAAACTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTACATTTGGTGTGAAGACCTGAAAAATCCCAAGTGCCTATAGATTGTGTTTATACTAAGTATGCCATTTGACTGAAAACTGAGGATGAAAATTTTGTGAGCTCAAAAGCAAATGAGATGACATTGATCGATCCTAGGAAACACCTTGCCATCAATTTATTAGTTTCTTTGAGCTTTACGTCTAATTATGTTTCATGTTCAATGACAATAATCTTCTGAAAGATCCTTCTGTTATTATCTGAGCAATGAGAATAACCTATACTATAGATCCTTTAATAATTTCAAGGTGCTATCATCACCTCAGAAGCAAACTTCCA

mRNA sequence

AGAAACCTTTCCTTTTTTCTGGAGGGGGCGTGGGGGAATTTAGGAAGTTGAGGGGAGACAATGCAATTATGGAAACTTTCTACTGAAAGAGCAAAATAGATTTCATAATTCTTAACTGAATCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCACAAAACCCTATCATCTTCCCCACACACCTCTCGATTTCCCCTCAAAACGCAGATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCCAAAATTGTTGATGATGCTCCTCCAGTTGCGACCTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCGTCGTCTCAATCGACGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAGAGGGCATCGATCATTCGGCGCTCGCCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGACTTGGTGCGGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTCTCTTTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTCAAAGTATCTTCAGAATGAGAAACTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTACATTTGGTGTGAAGACCTGAAAAATCCCAAGTGCCTATAGATTGTGTTTATACTAAGTATGCCATTTGACTGAAAACTGAGGATGAAAATTTTGTGAGCTCAAAAGCAAATGAGATGACATTGATCGATCCTAGGAAACACCTTGCCATCAATTTATTAGTTTCTTTGAGCTTTACGTCTAATTATGTTTCATGTTCAATGACAATAATCTTCTGAAAGATCCTTCTGTTATTATCTGAGCAATGAGAATAACCTATACTATAGATCCTTTAATAATTTCAAGGTGCTATCATCACCTCAGAAGCAAACTTCCA

Coding sequence (CDS)

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCACAAAACCCTATCATCTTCCCCACACACCTCTCGATTTCCCCTCAAAACGCAGATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCCAAAATTGTTGATGATGCTCCTCCAGTTGCGACCTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCGTCGTCTCAATCGACGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAGAGGGCATCGATCATTCGGCGCTCGCCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGACTTGGTGCGGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTCTCTTTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTCAAAGTATCTTCAGAATGAGAAACTTAAAGGTGATAAATCATAA

Protein sequence

MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATSSKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

Homology

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BLAST of Lcy11g002430 vs. ExPASy Swiss-Prot
Match: F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 115/203 (56.65%), Postives = 137/203 (67.49%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQI  HSP SF+T+PYHL  T        RF IK QN        S+I  D     + 
Sbjct: 1   MALQI--HSPCSFSTRPYHLFFT----TRNPRFAIKCQN--------SQIESDTTEDPSR 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
           SK SSSS  GFGS +S S+   K S   A + G +KGK +R  + RR+PVEKPVF+ E  
Sbjct: 61  SKNSSSSGVGFGSPASSSSPAKKLS---AATSGNKKGKGKR-EVNRRAPVEKPVFMSEEG 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
              A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V L
Sbjct: 121 AAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDK 204
           FVAGT AYGV KY+QNEK+KG +
Sbjct: 181 FVAGTTAYGVLKYIQNEKMKGQE 185

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BLAST of Lcy11g002430 vs. ExPASy TrEMBL
Match: A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.5e-87
Identity = 178/204 (87.25%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQIIHHSPSSFT KPYHLP  PL FPSK +F IKSQNPSESEKPISK VDDAP     
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAP----- 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
               +SSAQGFGS SSQSTT+SKSSPKA  SKGKQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  --VGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGVSKYLQNEKLKGDKS
Sbjct: 181 FVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Lcy11g002430 vs. ExPASy TrEMBL
Match: A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.2e-86
Identity = 177/204 (86.76%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQIIHHSPSSFT KPYHLP TPL FPSK +F IKSQ+PSESEKPISK VDDA      
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDA------ 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
               +SSAQGFGS SSQSTT+SKSSPKA  SKGKQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  -AVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGVSKYLQNEKLKGDKS
Sbjct: 181 FVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Lcy11g002430 vs. ExPASy TrEMBL
Match: A0A6J1CH98 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011420 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.2e-82
Identity = 179/206 (86.89%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQN--PSESEKPISKIVDDAPPVA 60
           MALQII HSPSSFT KPY LP  PL FPSKR F IKSQN   SESEK ISK+VDDA  VA
Sbjct: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDA-SVA 60

Query: 61  TSSKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGE 120
           TSSKASSSSAQGFGSS +QS  TSK SPKA PSKGKQKGKRQRASIIRRSPVEKPVFVG+
Sbjct: 61  TSSKASSSSAQGFGSSPTQS--TSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQ 120

Query: 121 VDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV 180
           VDEEAAKEQ RNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKF VKYLYPSFTPTV
Sbjct: 121 VDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTV 180

Query: 181 SLFVAGTVAYGVSKYLQNEKLKGDKS 205
           SLFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 SLFVAGTVAYGVLKYLQNEKTKGEKS 203

[Close]

BLAST of Lcy11g002430 vs. ExPASy TrEMBL
Match: A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.8e-82
Identity = 171/204 (83.82%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQI+HHSPSSFT KPYHLP+  L F SK +F IKSQNPSESEKPISKIVDDA P+ATS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDA-PIATS 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
           SK S+SS QGFGSSS QST+TSKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  SKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           E+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSL
Sbjct: 121 EQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 FVAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Lcy11g002430 vs. ExPASy TrEMBL
Match: A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 8.3e-82
Identity = 170/204 (83.33%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQI+HHSPSSFT KPYHLP+  L F SK +F IKSQNPSESEKPISKIVDDA P+ATS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDA-PIATS 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
           SK  +SS+QGFGSSS QST+TSKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  SKPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           E+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSL
Sbjct: 121 EQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 FVAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Lcy11g002430 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 2.7e-87
Identity = 179/204 (87.75%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQIIHHSPSSFT KPYHLP TPL FPSK +F IKSQNPSESEKPISK VDDAP     
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAP----- 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
               +SSAQGFGS SSQSTT+SKSSPKA  SKGKQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  --VGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGVSKYLQNEKLKGDKS
Sbjct: 181 FVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Lcy11g002430 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-86
Identity = 178/204 (87.25%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQIIHHSPSSFT KPYHLP  PL FPSK +F IKSQNPSESEKPISK VDDAP     
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAP----- 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
               +SSAQGFGS SSQSTT+SKSSPKA  SKGKQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  --VGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGVSKYLQNEKLKGDKS
Sbjct: 181 FVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Lcy11g002430 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 326.6 bits (836), Expect = 1.5e-85
Identity = 177/204 (86.76%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQIIHHSPSSFT KPYHLP TPL FPSK +F IKSQ+PSESEKPISK VDDA      
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDA------ 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
               +SSAQGFGS SSQSTT+SKSSPKA  SKGKQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  -AVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGVSKYLQNEKLKGDKS
Sbjct: 181 FVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Lcy11g002430 vs. NCBI nr
Match: XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 179/204 (87.75%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQI+HHSPSSFT KPYHLP+  L+FPSK +F I SQNPSESEKPISK VDDA P+ATS
Sbjct: 1   MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDA-PLATS 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
           SK SSSS QGFGSSSSQSTTTSKSSPKA     KQKGKRQRASIIRRSPVEKPVFVG+VD
Sbjct: 61  SKPSSSSPQGFGSSSSQSTTTSKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGKVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDKS 205
           FVAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 FVAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Lcy11g002430 vs. NCBI nr
Match: KAG6600161.1 (Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.4 bits (825), Expect = 2.8e-84
Identity = 174/200 (87.00%), Postives = 179/200 (89.50%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQIIHHSPSSFT KPYHLP  PL FPSK +F IKSQNPSESEKPISK VDDAP     
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAP----- 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
               +SSAQGFGS SSQSTT+SKSSPKA  SKGKQKGKRQRASIIRRSPVEKPVFVGEVD
Sbjct: 61  --VGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           EEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSL
Sbjct: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSL 180

Query: 181 FVAGTVAYGVSKYLQNEKLK 201
           FVAGTVAYGVSKYLQNEKLK
Sbjct: 181 FVAGTVAYGVSKYLQNEKLK 193

[Close]

BLAST of Lcy11g002430 vs. TAIR 10
Match: AT5G51545.1 (low psii accumulation2 )

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 115/203 (56.65%), Postives = 137/203 (67.49%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTTKPYHLPHTPLDFPSKRRFFIKSQNPSESEKPISKIVDDAPPVATS 60
           MALQI  HSP SF+T+PYHL  T        RF IK QN        S+I  D     + 
Sbjct: 1   MALQI--HSPCSFSTRPYHLFFT----TRNPRFAIKCQN--------SQIESDTTEDPSR 60

Query: 61  SKASSSSAQGFGSSSSQSTTTSKSSPKAAPSKGKQKGKRQRASIIRRSPVEKPVFVGEVD 120
           SK SSSS  GFGS +S S+   K S   A + G +KGK +R  + RR+PVEKPVF+ E  
Sbjct: 61  SKNSSSSGVGFGSPASSSSPAKKLS---AATSGNKKGKGKR-EVNRRAPVEKPVFMSEEG 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
              A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V L
Sbjct: 121 AAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDK 204
           FVAGT AYGV KY+QNEK+KG +
Sbjct: 181 FVAGTTAYGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of Lcy11g002430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDA6	2.3e-44	56.65	Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1	[more]

BLAST of Lcy11g002430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNA7	6.5e-87	87.25	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IBT8	7.2e-86	86.76	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CH98	2.2e-82	86.89	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3AXX6	2.8e-82	83.82	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7VJY0	8.3e-82	83.33	Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lcy11g002430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554492.1	2.7e-87	87.75	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022941727.1	1.4e-86	87.25	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828....	[more]
XP_022973018.1	1.5e-85	86.76	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]
XP_038899637.1	2.5e-85	87.75	protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]	[more]
KAG6600161.1	2.8e-84	87.00	Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of Lcy11g002430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51545.1	1.6e-45	56.65	low psii accumulation2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..89
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	PROTEIN LOW PSII ACCUMULATION 2, CHLOROPLASTIC	coord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g002430.1	Lcy11g002430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane