Lcy11g002410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g002410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S20
Location	Chr11: 2230847 .. 2232594 (+)
RNA-Seq Expression	Lcy11g002410
Synteny	Lcy11g002410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCACTCTCGTTCTCCTTCTTTCAGAGAGAGGCAGCTGGATACTCAACCGTAGAGATCTTCTTCTCACCCGTCATCCCAGGTTTCTCCTTTGAATTATGCAGTTTTAATTCTCAACTACGTCTGCTTATTGATTCTTTTATTGGAGAGTTGTTAAGATCATAATCTGTGCTTCATTATGATGAGATTTGTGAATGTGTATAAGTTAATGAACAAGTTTATCGATTTTCATCTCTAATTATTCGGCTCATGTGGTCGAGTTCTTTTTGCCAATATTGAAAACATTGTTCGGTTCGTTCCACAGATTCGTTTTGGAGATTTAGGACAACCGGAAGTATGTCGTACGCAATGAAACCGACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTTGAGAAAGGTATCTTATTATTGTTATTTTTTATATGCTACATTATTCTTGTTGTTGCTTTTTTCTTCTTTTGTAATTTAAGTTTATATGGCACTCAGATGAGATTCTTGCATCTTCGTTTCTCTAGTTATTTGATAACTTTGATAGGAAGTGAGTCGGATGATTGTTTCGTAATTTTCTTGCAATGCTCTGATTATGAATAAGTTTTAAGCTTACTAACACGTGAACAGATTGTAGAGAGATATTGTCGTTGGATTAAAGGGATGTGGAATCCCCATTATGTATTGACTGATGAATTTTAGTTCAGGAATTATCAAATAAGTTATTGGGATTTTAGTCTGTTTCGCTTGATGTTGTTGCTTTGTTGAATCCTGTGCATAGTTGGCTTTTCAAGTAGTTTTTTCCCCCTCAAAGTGGTTTCATTTAAGGCGATTTTGGCAATTAGTTTGATATCTGTTTAAATCCATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACCAAGGTTCTTCACATTACAACCAGAAAATCTCCATGTGGTGAAGGTACGTCACCAGCTAACTATGATTTTCTAAAGTTTAGTCTTCGTTCTTTTAATGTTACTCTTTCTATCCTTTCTCTTGAGGGGAGACTAAGCATTTTGGAGATGGACTCTAGTCTCCTTTAATTTTTTTTGGAAAAGTAATCGAGAGTCTGAGACTATATTATATGAGTTCCTTCAGGGGTGATCTTCCCATTTTGAAATCGTTGCTTATCAAGAAATTTTAGTATTCTGCCAACAATTTTTGGGGGGTTTCCTTGATTTCTTCATTTTTAACAATCTTGGCGAATACAACTTTAAATGCATCTCATTATTGAAAACATTCCTTCATTTGGGTTTTGATTGCAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAACGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATGCACTCCTTTCATGTTTTGCCTATTTTTAGTCTCATTAGACAGTTGTTACTTTTTGGGTTTAGAACATACCTGTGAGGTCTGTGGGGTTTAAATGCAATAGTTGTTCCCATTACATGTTGAAATTAACGACATTGAGAGAGTTTTCTATTCCTAATCCTGGCAATTTTCTTGCGTTAGAACTATGTTAATTTCATTTATCTATGCAGATTCTGTATCTACAGCGTTTTCACTTTAATGCCC

mRNA sequence

CGTCACTCTCGTTCTCCTTCTTTCAGAGAGAGGCAGCTGGATACTCAACCGTAGAGATCTTCTTCTCACCCGTCATCCCAGATTCGTTTTGGAGATTTAGGACAACCGGAAGTATGTCGTACGCAATGAAACCGACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTTGAGAAAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACCAAGGTTCTTCACATTACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAACGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATGCACTCCTTTCATGTTTTGCCTATTTTTAGTCTCATTAGACAGTTGTTACTTTTTGGGTTTAGAACATACCTGTGAGGTCTGTGGGGTTTAAATGCAATAGTTGTTCCCATTACATGTTGAAATTAACGACATTGAGAGAGTTTTCTATTCCTAATCCTGGCAATTTTCTTGCGTTAGAACTATGTTAATTTCATTTATCTATGCAGATTCTGTATCTACAGCGTTTTCACTTTAATGCCC

Coding sequence (CDS)

ATGTCGTACGCAATGAAACCGACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTTGAGAAAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACCAAGGTTCTTCACATTACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAACGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MSYAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ

Homology

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BLAST of Lcy11g002410 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.2e-54
Identity = 108/116 (93.10%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121

[Close]

BLAST of Lcy11g002410 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 9.3e-54
Identity = 107/116 (92.24%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 8   MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 67

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 68  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Lcy11g002410 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-50
Identity = 100/117 (85.47%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLH
Sbjct: 12  MKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLH 71

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ 122
           ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI+DQ
Sbjct: 72  ITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISDQ 128

[Close]

BLAST of Lcy11g002410 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 14  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 73
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Lcy11g002410 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.2e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 4   AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 63
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 64  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Lcy11g002410 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. ExPASy TrEMBL
Match: A0A1S3AXJ9 (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. NCBI nr
Match: KAG6600158.1 (Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 229 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 288

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 289 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 348

Query: 121 DQ 122
           DQ
Sbjct: 349 DQ 350

[Close]

BLAST of Lcy11g002410 vs. NCBI nr
Match: XP_038711947.1 (40S ribosomal protein S20-2-like [Tripterygium wilfordii] >XP_038711948.1 40S ribosomal protein S20-2-like [Tripterygium wilfordii] >XP_038711949.1 40S ribosomal protein S20-2-like [Tripterygium wilfordii] >XP_038711950.1 40S ribosomal protein S20-2-like [Tripterygium wilfordii])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MSYAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           M+YAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT
Sbjct: 1   MAYAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 120
           KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

[Close]

BLAST of Lcy11g002410 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Lcy11g002410 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MSY-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           M+Y AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 DQ 122
           DQ
Sbjct: 154 DQ 155

[Close]

BLAST of Lcy11g002410 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-55
Identity = 108/116 (93.10%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121

[Close]

BLAST of Lcy11g002410 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-55
Identity = 108/116 (93.10%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121

[Close]

BLAST of Lcy11g002410 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-55
Identity = 108/116 (93.10%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 6   MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 65

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 66  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121

[Close]

BLAST of Lcy11g002410 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.6e-55
Identity = 107/116 (92.24%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 8   MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 67

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 68  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Lcy11g002410 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.6e-55
Identity = 107/116 (92.24%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 5   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 64
           MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL 
Sbjct: 8   MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 67

Query: 65  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 68  ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:

BLAST of Lcy11g002410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STY6	4.2e-54	93.10	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
P49200	9.3e-54	92.24	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
P35686	3.7e-50	85.47	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
P23403	6.2e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1	[more]
Q3ZBH8	8.2e-42	70.09	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]

BLAST of Lcy11g002410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKH9	1.0e-58	98.36	40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1IAH1	1.0e-58	98.36	40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=...	[more]
A0A6J1FSX5	1.0e-58	98.36	40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P...	[more]
A0A1S3AXJ9	1.0e-58	98.36	40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV...	[more]
A0A6J1J8F7	8.4e-58	97.54	40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=...	[more]

BLAST of Lcy11g002410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439109.1	2.1e-58	98.36	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r...	[more]
KAG6600158.1	2.1e-58	98.36	Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038711947.1	1.3e-57	96.67	40S ribosomal protein S20-2-like [Tripterygium wilfordii] >XP_038711948.1 40S ri...	[more]
XP_022985516.1	1.7e-57	97.54	40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma...	[more]
XP_022922646.1	1.7e-57	97.54	40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Lcy11g002410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47370.2	3.0e-55	93.10	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.1	3.0e-55	93.10	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.3	3.0e-55	93.10	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	6.6e-55	92.24	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	6.6e-55	92.24	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 21..34 score: 44.51 coord: 56..71 score: 42.43 coord: 78..92 score: 52.69
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 4..120
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 19..118 score: 18.389648
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 23..117 e-value: 2.0E-38 score: 143.7
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 23..117 e-value: 6.3E-28 score: 96.9
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 20..118 e-value: 1.7E-40 score: 135.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 6..120 e-value: 5.4E-49 score: 167.1
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 21..118
None	No IPR available	PANTHER	PTHR11700:SF27	RIBOSOMAL PROTEIN S10-RELATED	coord: 4..120
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 45..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g002410.1	Lcy11g002410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome