Lcy11g002340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g002340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like
Location	Chr11: 2184510 .. 2185399 (-)
RNA-Seq Expression	Lcy11g002340
Synteny	Lcy11g002340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAGTGTCGAGCAAAATGAAGCTTTCATGGCTTCTAATGGCAGTTACTTGCATGAATTCTCGTTCGCTTCCACAAGCCCTATATTTCCTGTCTATTCAATCTAATCACCGCACTTCAGAACAGAAAACTCCAATCCTTCTTATAGAGTTCATGCTCGCAATCAAGCGTTCTAAGGCAACCCATTCGTTCTCGAAGTTCGATCGCCGTGCCACCATTGCCACTGTATCGTTTAGCCTCCCGACTCCGTAGGTTTTGTTTATTACTCTTGCTTAAGTTGCTGATTATTTTTCGAGCCTTAAAAGCTAAAAGTCTTGTCTGATTTTGCAGGAAAATCGGTTGGCACTTCCCCTCAGAAACCCCCAACGTAAGTTTACCCACAAATTTTCTCCATTCAATTAGCGTTTTTCTGCTGCAAGCATTGAGGTTAAGTGGTGTTAATTTTTTTTTTTTTGAAAAGGTTAAGTGGTGTTAATTGGATTCATTATTGCTTAACTTTATAATCCCCGAAGATATTTTTTTTTTCTAATTTAACTTATCTGTATGATATTAATGAAGGGTGATGATTAATTGGGTTGAACTACAACTTTAGTCTTGATTCCGTAAAGAGACAAGCTTATGTTGTCTAGATTATACCAGGATGTGAAAATTTTTCTTCGTATTTTGGGTTGTAGCTTATATTAATATTGACTTCTCTGAAGTCATATGTACTCCGTGGGCCAAAATATTTGTCCATAAAGAAAGTTGGAATTAGGGCACGAGATGGATCTCAGCAATAACAGGAGAATGGTTATTCATGTGGGGAGCCTGGTTGCACAAACTATGGCGGGTCTTGTTTGTGCAGGATTTGACATTGCAGGCTTGAGAATGAAGGAGATTATAAATGATTAG

mRNA sequence

GTTCAGTGTCGAGCAAAATGAAGCTTTCATGGCTTCTAATGGCAGTTACTTGCATGAATTCTCGTTCGCTTCCACAAGCCCTATATTTCCTGTCTATTCAATCTAATCACCGCACTTCAGAACAGAAAACTCCAATCCTTCTTATAGAGTTCATGCTCGCAATCAAGCGTTCTAAGGCAACCCATTCGTTCTCGAAGTTCGATCGCCGTGCCACCATTGCCACTGAAAATCGGTTGGCACTTCCCCTCAGAAACCCCCAACGATTTGACATTGCAGGCTTGAGAATGAAGGAGATTATAAATGATTAG

Coding sequence (CDS)

ATGAAGCTTTCATGGCTTCTAATGGCAGTTACTTGCATGAATTCTCGTTCGCTTCCACAAGCCCTATATTTCCTGTCTATTCAATCTAATCACCGCACTTCAGAACAGAAAACTCCAATCCTTCTTATAGAGTTCATGCTCGCAATCAAGCGTTCTAAGGCAACCCATTCGTTCTCGAAGTTCGATCGCCGTGCCACCATTGCCACTGAAAATCGGTTGGCACTTCCCCTCAGAAACCCCCAACGATTTGACATTGCAGGCTTGAGAATGAAGGAGATTATAAATGATTAG

Protein sequence

MKLSWLLMAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPILLIEFMLAIKRSKATHSFSKFDRRATIATENRLALPLRNPQRFDIAGLRMKEIIND

Homology

[Close]

BLAST of Lcy11g002340 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T +NS SL Q  + L+ QSN    E KT  L    L E  LAIKRS  THS SKF R
Sbjct: 1  MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPATKPE 77

[Close]

BLAST of Lcy11g002340 vs. ExPASy TrEMBL
Match: A0A6J1HY47 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467707 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

[Close]

BLAST of Lcy11g002340 vs. ExPASy TrEMBL
Match: A0A6J1G082 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449490 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

[Close]

BLAST of Lcy11g002340 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 40/78 (51.28%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL      L  QSN  + E KT  L    LI+  LAIKRS ATHS SKF R
Sbjct: 1  MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

[Close]

BLAST of Lcy11g002340 vs. NCBI nr
Match: XP_022141304.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T +NS SL Q  + L+ QSN    E KT  L    L E  LAIKRS  THS SKF R
Sbjct: 1  MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPATKPE 77

[Close]

BLAST of Lcy11g002340 vs. NCBI nr
Match: XP_023552673.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L  QSN  + E KT  L    LI+  LAIKRS ATHS SKF R
Sbjct: 1  MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

[Close]

BLAST of Lcy11g002340 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L  QSN  + E KT  L    LI+  LAIKRS ATHS SKF R
Sbjct: 1  MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

[Close]

BLAST of Lcy11g002340 vs. NCBI nr
Match: XP_022968478.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

[Close]

BLAST of Lcy11g002340 vs. NCBI nr
Match: XP_022945169.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATENRLALPLRNPQ 82
          RAT AT +  +LP   P+
Sbjct: 61 RATTATVS-FSLPASKPE 77

The following BLAST results are available for this feature:

BLAST of Lcy11g002340 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g002340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CI79	5.0e-05	50.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A6J1HY47	1.9e-04	50.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1G082	1.9e-04	50.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1E4F8	3.3e-04	51.28	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]

BLAST of Lcy11g002340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141304.1	1.0e-04	50.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momord...	[more]
XP_023552673.1	1.8e-04	51.28	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
KAG6576777.1	1.8e-04	51.28	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]
XP_022968478.1	3.9e-04	50.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022945169.1	3.9e-04	50.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]

BLAST of Lcy11g002340 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g002340.1	Lcy11g002340.1	mRNA