Lcy11g002020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g002020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LysM domain-containing protein
Location	Chr11: 1897844 .. 1898422 (+)
RNA-Seq Expression	Lcy11g002020
Synteny	Lcy11g002020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACTCCAAAAAGAAGAAAAAACCCTCGAAAATTCCCCTCCTCCATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCTTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGTCTCCTGTGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCGCCGCTGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGTCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACGAAATTCAAATTGGGATCGGAAACTGGTTGATTTTTTTTTTCTTTCTTTTCTTTTGAATAAAATAAATCCTGACAAATAATATATATACCCTTCGGAGTTTCAGGCCATTTTATACCCAAAATAATAATAATAATAATAAAGTTTAGATTTTTATTTATAATTTCCATGACAGACATAGTTATATCTCGA

mRNA sequence

TAAACTCCAAAAAGAAGAAAAAACCCTCGAAAATTCCCCTCCTCCATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCTTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGTCTCCTGTGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCGCCGCTGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGTCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACGAAATTCAAATTGGGATCGGAAACTGGTTGATTTTTTTTTTCTTTCTTTTCTTTTGAATAAAATAAATCCTGACAAATAATATATATACCCTTCGGAGTTTCAGGCCATTTTATACCCAAAATAATAATAATAATAATAAAGTTTAGATTTTTATTTATAATTTCCATGACAGACATAGTTATATCTCGA

Coding sequence (CDS)

ATGGCCGTCTCTATTTCCAGAACTAGGCCACCGTCTTCCCGACCCCTAATCGACGTCGTTTCCTGGTACTCCGCCGTGGGTCTCCTGTGCCTGATTCTGATCGGCTCCATCCGAGAAAGCTCCTCCTCCGCCGCTGACGACGACGGCGGCCTGATGCTCAGAGCGAACTTGCTGACGGAGCGTCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCGGGTTTGGTCATCAAAATTATCTCCTCTTACAAGCCTACGAAATTCAAATTGGGATCGGAAACTGGTTGA

Protein sequence

MAVSISRTRPPSSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETG

Homology

[Close]

BLAST of Lcy11g002020 vs. ExPASy TrEMBL
Match: A0A6J1J769 (uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.4e-46
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTERPCDE 65
           SRT PPSSR LIDVVSWY AV +L LILIGSIRE+SSSA+ DDG  MLR NLLT R CDE
Sbjct: 7   SRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDE 66

Query: 66  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETG 125
           IYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +TG
Sbjct: 67  IYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQTG 123

[Close]

BLAST of Lcy11g002020 vs. ExPASy TrEMBL
Match: A0A5A7VAP9 (Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7478G00010 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.3e-41
Identity = 92/113 (81.42%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 3   VSISRTRPP----SSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLL 62
           VSI R+R P    SSRPLIDVVSWY AVGLL LILIGSIRE+SSS+ D   G  LR NL+
Sbjct: 4   VSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQ--GRSLRGNLV 63

Query: 63  TERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 112
           T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 64  TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 114

[Close]

BLAST of Lcy11g002020 vs. ExPASy TrEMBL
Match: A0A1S3AXP2 (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.3e-41
Identity = 92/113 (81.42%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 3   VSISRTRPP----SSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLL 62
           VSI R+R P    SSRPLIDVVSWY AVGLL LILIGSIRE+SSS+ D   G  LR NL+
Sbjct: 4   VSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQ--GRSLRGNLV 63

Query: 63  TERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 112
           T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 64  TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 114

[Close]

BLAST of Lcy11g002020 vs. ExPASy TrEMBL
Match: A0A6J1DRZ3 (uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023841 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 7   RTRPPSSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEI 66
           R+  PSSRP  DVVSWY AVG+L LILIGSIRES+ SA   D G + R NL+  RPCDEI
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEI 69

Query: 67  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPT 116
           YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS  P+
Sbjct: 70  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPS 118

[Close]

BLAST of Lcy11g002020 vs. ExPASy TrEMBL
Match: A0A0A0L5R9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.2e-40
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 3   VSISRTRPP--SSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTE 62
           VS+ R+R P  SSRPLIDVVSWY AVGLL LILIGSIRE+SSS      G +LR NL+T 
Sbjct: 4   VSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG----DGRLLRGNLVTW 63

Query: 63  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 112
           RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 64  RPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Lcy11g002020 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 7.0e-46
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTERPCDE 65
           SRT PPSSR LIDVVSWY AV +L LILIGSIRE+SSSA+ DDG  MLR NLLT R CDE
Sbjct: 7   SRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDE 66

Query: 66  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETG 125
           IYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +TG
Sbjct: 67  IYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQTG 123

[Close]

BLAST of Lcy11g002020 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 3.5e-45
Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 6   SRTRPPSSRPLIDVVSWYSAVGLLCLILIGSIRE-SSSSAADDDGGLMLRANLLTERPCD 65
           SRT PPSSR LIDVVSWY A+ LL LILIGSIRE SSSSA+ DDGG MLR NLLT R CD
Sbjct: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66

Query: 66  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPTKFKLGSETG 125
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS+ P   KLG +TG
Sbjct: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP--KLGFQTG 124

[Close]

BLAST of Lcy11g002020 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 92/113 (81.42%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 3   VSISRTRPP----SSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLL 62
           VSI R+R P    SSRPLIDVVSWY AVGLL LILIGSIRE+SSS+ D   G  LR NL+
Sbjct: 4   VSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQ--GRSLRGNLV 63

Query: 63  TERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 112
           T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 64  TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 114

[Close]

BLAST of Lcy11g002020 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 7   RTRPPSSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEI 66
           R+  PSSRP  DVVSWY AVG+L LILIGSIRES+ SA   D G + R NL+  RPCDEI
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEI 69

Query: 67  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSYKPT 116
           YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS  P+
Sbjct: 70  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPS 118

[Close]

BLAST of Lcy11g002020 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 3   VSISRTRPP--SSRPLIDVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTE 62
           VS+ R+R P  SSRPLIDVVSWY AVGLL LILIGSIRE+SSS      G +LR NL+T 
Sbjct: 10  VSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG----DGRLLRGNLVTW 69

Query: 63  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 112
           RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 70  RPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 116

[Close]

BLAST of Lcy11g002020 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-29
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 18  DVVSWYSAVGLLCLILIGSIRESSSSAADDDGGLMLRANLLTERPCDEIYVVGEGETLHT 77
           D+ +W SAV LL LIL+ S+RE+++S +       +R +  + +PC+EIY+VGEGETLHT
Sbjct: 10  DMSAWCSAVVLLSLILLLSVRENNASNS-------IRGSQFSTKPCEEIYIVGEGETLHT 69

Query: 78  ISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSY 113
           I DKCGDPFIVERNPHIHDPDDVFPGLV+KI   Y
Sbjct: 70  IGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFY 97

[Close]

BLAST of Lcy11g002020 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 18  DVVSWYSAVGLLCLILIGSIRESSSSAADD----DGGLMLRANLLTERPCDEIYVVGEGE 77
           + V+ Y  V LL L L GS++ S+   + +        + R   + ERPC+E+YVVGEG+
Sbjct: 10  NTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVGEGD 69

Query: 78  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 109
           TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 70  TLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Lcy11g002020 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-21
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 12  SSRPLIDVVSWYSAVGLLCLILIGSI---RESSSSAADDDGGLMLRANLLTERP-CDEIY 71
           SS  + + +SWY AV    ++L+ S    +E S+   +     M+       RP CDEIY
Sbjct: 5   SSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIY 64

Query: 72  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 112
            V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 65  EVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

The following BLAST results are available for this feature:

BLAST of Lcy11g002020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g002020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J769	3.4e-46	81.51	uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184...	[more]
A0A5A7VAP9	7.3e-41	81.42	Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXP2	7.3e-41	81.42	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
A0A6J1DRZ3	1.6e-40	77.98	uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0L5R9	6.2e-40	80.18	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 S...	[more]

BLAST of Lcy11g002020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985106.1	7.0e-46	81.51	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
KAG6576752.1	3.5e-45	82.50	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008439155.1	1.5e-40	81.42	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
XP_022157015.1	3.4e-40	77.98	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
KGN57357.2	1.3e-39	80.18	hypothetical protein Csa_009741 [Cucumis sativus]	[more]

BLAST of Lcy11g002020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	3.7e-29	62.11	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.9e-25	55.79	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	4.9e-21	49.04	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 67..108 e-value: 2.2E-4 score: 21.2
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 66..108 e-value: 2.82325E-5 score: 37.0797
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 58..116 e-value: 7.1E-7 score: 30.7
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 12..111
None	No IPR available	PANTHER	PTHR33648:SF31	PROTEIN, PUTATIVE-RELATED	coord: 12..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g002020.1	Lcy11g002020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity