Lcy10g008580 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g008580
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr10: 34624429 .. 34624983 (-)
RNA-Seq Expression	Lcy10g008580
Synteny	Lcy10g008580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCAAGATGGTTTGGCCATGGATTTATTCAGAAGCTTAAGGATTTCAAGATTACTCTAAAGGAGTGGATCTCTGAAACCTATGGAAAAACTGTTGAGATGAAAATCTCCCGCAAAAAGGAACTCTCTGTTATTGATGCACTTGAAGATCAGGGCCCATTAAACTCTTCACTTTTTACTCGTCAGATTGAGATTAGAGGTAAACTTCTATCCATTACTGCCAAAGAGGAGGCTGTGTGGAGACAACGATGCAAACAACAGTGGTTGTCTTTGGGAGATGAAAATTCGTCATTCTTCCACCGTATTATGGCTACAAGAAGAAGGAATACTATAATTGATATTTTATCTAGATCAAGACAGAGTCTTGTTACAAACTTAGATATTGAGAAAGAATCTGTGGATTTTTTTTTAGAGAATTATACACCAAGAAAAATGGCTCCAATAAATCTCCTAGACTCGATGATTGAATCCCCCTTTTCTGAAGAAGAAATCTTATTAGCTGTTAATGATTTAGGCTCCAATAAATCTCCTGGACTCGATGATACTTGCTAA

mRNA sequence

ATGATTTCAAGATGGTTTGGCCATGGATTTATTCAGAAGCTTAAGGATTTCAAGATTACTCTAAAGGAGTGGATCTCTGAAACCTATGGAAAAACTGTTGAGATGAAAATCTCCCGCAAAAAGGAACTCTCTGTTATTGATGCACTTGAAGATCAGGGCCCATTAAACTCTTCACTTTTTACTCGTCAGATTGAGATTAGAGGTAAACTTCTATCCATTACTGCCAAAGAGGAGGCTGTGTGGAGACAACGATGCAAACAACAGTGGTTGTCTTTGGGAGATGAAAATTCGTCATTCTTCCACCGTATTATGGCTACAAGAAGAAGGAATACTATAATTGATATTTTATCTAGATCAAGACAGAGTCTTGTTACAAACTTAGATATTGAGAAAGAATCTGTGGATTTTTTTTTAGAGAATTATACACCAAGAAAAATGGCTCCAATAAATCTCCTAGACTCGATGATTGAATCCCCCTTTTCTGAAGAAGAAATCTTATTAGCTGTTAATGATTTAGGCTCCAATAAATCTCCTGGACTCGATGATACTTGCTAA

Coding sequence (CDS)

ATGATTTCAAGATGGTTTGGCCATGGATTTATTCAGAAGCTTAAGGATTTCAAGATTACTCTAAAGGAGTGGATCTCTGAAACCTATGGAAAAACTGTTGAGATGAAAATCTCCCGCAAAAAGGAACTCTCTGTTATTGATGCACTTGAAGATCAGGGCCCATTAAACTCTTCACTTTTTACTCGTCAGATTGAGATTAGAGGTAAACTTCTATCCATTACTGCCAAAGAGGAGGCTGTGTGGAGACAACGATGCAAACAACAGTGGTTGTCTTTGGGAGATGAAAATTCGTCATTCTTCCACCGTATTATGGCTACAAGAAGAAGGAATACTATAATTGATATTTTATCTAGATCAAGACAGAGTCTTGTTACAAACTTAGATATTGAGAAAGAATCTGTGGATTTTTTTTTAGAGAATTATACACCAAGAAAAATGGCTCCAATAAATCTCCTAGACTCGATGATTGAATCCCCCTTTTCTGAAGAAGAAATCTTATTAGCTGTTAATGATTTAGGCTCCAATAAATCTCCTGGACTCGATGATACTTGCTAA

Protein sequence

MISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFTRQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQSLVTNLDIEKESVDFFLENYTPRKMAPINLLDSMIESPFSEEEILLAVNDLGSNKSPGLDDTC

Homology

[Close]

BLAST of Lcy10g008580 vs. ExPASy TrEMBL
Match: A0A438ED82 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_168 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2    ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
            +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 861  VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGKIDRIEQEGNLNLELVS 920

Query: 62   RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
             +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 921  ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERG 980

Query: 122  SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
              + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 981  ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 1040

[Close]

BLAST of Lcy10g008580 vs. ExPASy TrEMBL
Match: A0A438HFR2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_207 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2    ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
            +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 924  VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVS 983

Query: 62   RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
             +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 984  ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERG 1043

Query: 122  SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
              + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 1044 ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 1103

[Close]

BLAST of Lcy10g008580 vs. ExPASy TrEMBL
Match: A0A438ETN1 (SWI/SNF complex subunit SWI3C OS=Vitis vinifera OX=29760 GN=SWI3C_4 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2   ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
           +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 381 VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVS 440

Query: 62  RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
            +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 441 ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISERG 500

Query: 122 SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
             + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 501 ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 560

[Close]

BLAST of Lcy10g008580 vs. ExPASy TrEMBL
Match: A0A438C911 (Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=29760 GN=SMC3_7 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2   ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
           +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 116 VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVS 175

Query: 62  RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
            +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 176 ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERG 235

Query: 122 SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
             + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 236 ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 295

[Close]

BLAST of Lcy10g008580 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-21
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 5   WFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFTRQI 64
           W GHG + KLK  K  +K WI+E +      K      ++ +D LE   P+       +I
Sbjct: 266 WPGHGLMMKLKSLKYAIKLWITEHFRCIHSQKEDLTNLMNSLDDLEGSQPVTPDQSRARI 325

Query: 65  EIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTII-DILSRSRQSL 124
           + +  LLS+ AKEEA WRQRCKQ+WL  GDEN+ FFHR +A +RR +II +ILS+    L
Sbjct: 326 QAKEDLLSVVAKEEAFWRQRCKQKWLCEGDENTKFFHRFLANKRRRSIITEILSKKGIGL 385

Query: 125 VTNLDIEKESVDF 137
               DIE+E +DF
Sbjct: 386 TQIKDIEEEFIDF 398

[Close]

BLAST of Lcy10g008580 vs. NCBI nr
Match: RVW83303.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2    ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
            +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 924  VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVS 983

Query: 62   RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
             +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 984  ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERG 1043

Query: 122  SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
              + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 1044 ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 1103

[Close]

BLAST of Lcy10g008580 vs. NCBI nr
Match: RVW45791.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2    ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
            +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 861  VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGKIDRIEQEGNLNLELVS 920

Query: 62   RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
             +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 921  ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERG 980

Query: 122  SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
              + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 981  ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 1040

[Close]

BLAST of Lcy10g008580 vs. NCBI nr
Match: RVW51134.1 (SWI/SNF complex subunit SWI3C [Vitis vinifera])

HSP 1 Score: 111.7 bits (278), Expect = 6.8e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2   ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
           +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 381 VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVS 440

Query: 62  RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
            +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 441 ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISERG 500

Query: 122 SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
             + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 501 ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 560

[Close]

BLAST of Lcy10g008580 vs. NCBI nr
Match: RVW19678.1 (Structural maintenance of chromosomes protein 3, partial [Vitis vinifera])

HSP 1 Score: 111.7 bits (278), Expect = 6.8e-21
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 2   ISRWFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFT 61
           +  W GH F++KLK  K  LKEW +  +G   E K     +L  ID +E +G LN  L +
Sbjct: 116 VEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVS 175

Query: 62  RQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTIIDILSRSRQ 121
            +I  R +L  +  KEE  WRQ+ + +W+  GD NS FFHR+   RR    I  L   R 
Sbjct: 176 ERILRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERG 235

Query: 122 SLVTNLD-IEKESVDFFLENYTPRK----------MAPINLLDSM-IESPFSEEEILLAV 181
             + N++ I +E V+FF   Y+  +           API+   ++ ++ PFSEEE+ +AV
Sbjct: 236 ETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAV 295

[Close]

BLAST of Lcy10g008580 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-21
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 5   WFGHGFIQKLKDFKITLKEWISETYGKTVEMKISRKKELSVIDALEDQGPLNSSLFTRQI 64
           W GHG + KLK  K  +K WI+E +      K      ++ +D LE   P+       +I
Sbjct: 266 WPGHGLMMKLKSLKYAIKLWITEHFRCIHSQKEDLTNLMNSLDDLEGSQPVTPDQSRARI 325

Query: 65  EIRGKLLSITAKEEAVWRQRCKQQWLSLGDENSSFFHRIMATRRRNTII-DILSRSRQSL 124
           + +  LLS+ AKEEA WRQRCKQ+WL  GDEN+ FFHR +A +RR +II +ILS+    L
Sbjct: 326 QAKEDLLSVVAKEEAFWRQRCKQKWLCEGDENTKFFHRFLANKRRRSIITEILSKKGIGL 385

Query: 125 VTNLDIEKESVDF 137
               DIE+E +DF
Sbjct: 386 TQIKDIEEEFIDF 398

[Close]

BLAST of Lcy10g008580 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 8.6e-06
Identity = 42/161 (26.09%), Postives = 72/161 (44.72%), Query Frame = 0


Query: 40  KKELSVIDALEDQGPLN--SSLFTRQIEIRGKLLSITAKEEAVWRQRCKQQWLSLGDENS 99
           K+ L  +++++ Q   N   SLF  +   R K     A  E+ +RQ+ + +WL  GD N+
Sbjct: 392 KEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANT 451

Query: 100 SFFHRIMATRRRNTIIDILSRSRQSLVTNLDIEKESVDFFLEN--------YTPRKMAPI 159
            FFH+++   +   +I  L       V N+   KE +  +  +         TP  +  I
Sbjct: 452 RFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRI 511

Query: 160 ---------NLLDSMIESPFSEEEILLAVNDLGSNKSPGLD 182
                    + L S + +  S++EI  AV  +  NK+PG D
Sbjct: 512 KDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPD 552

The following BLAST results are available for this feature:

BLAST of Lcy10g008580 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g008580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438ED82	2.5e-21	35.94	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438HFR2	2.5e-21	35.94	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438ETN1	3.3e-21	35.94	SWI/SNF complex subunit SWI3C OS=Vitis vinifera OX=29760 GN=SWI3C_4 PE=4 SV=1	[more]
A0A438C911	3.3e-21	35.94	Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=...	[more]
A0A6J1E2G6	4.3e-21	43.61	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lcy10g008580 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW83303.1	5.2e-21	35.94	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW45791.1	5.2e-21	35.94	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW51134.1	6.8e-21	35.94	SWI/SNF complex subunit SWI3C [Vitis vinifera]	[more]
RVW19678.1	6.8e-21	35.94	Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]	[more]
XP_022158956.1	8.9e-21	43.61	uncharacterized protein LOC111025405 [Momordica charantia]	[more]

BLAST of Lcy10g008580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	8.6e-06	26.09	DNAse I-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g008580.1	Lcy10g008580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process