Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGATTCAGGGTTCAATTGAACATACTCCTAACATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAGAAAAGATGCTATAAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGTAAGTTGA
mRNA sequence
ATGTTTTTGATTCAGGGTTCAATTGAACATACTCCTAACATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAGAAAAGATGCTATAAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGTAAGTTGA
Coding sequence (CDS)
ATGTTTTTGATTCAGGGTTCAATTGAACATACTCCTAACATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAGAAAAGATGCTATAAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGTAAGTTGA
Protein sequence
MFLIQGSIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMHVS
Homology
BLAST of Lcy10g006530 vs. ExPASy TrEMBL
Match:
A0A6J1DJ46 (syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)
HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 140/157 (89.17%), Postives = 149/157 (94.90%), Query Frame = 0
Query: 9 EHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTS 68
+ TPNMKQ++D+Y LNLG+TEE TNVSS+GTTGIMNSVYMD DP+RESR DSSTASTS
Sbjct: 418 DQTPNMKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTS 477
Query: 69 GSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 128
GSPWYHLRKDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV
Sbjct: 478 GSPWYHLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 537
Query: 129 FLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
F+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 538 FILAGEAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574
BLAST of Lcy10g006530 vs. ExPASy TrEMBL
Match:
A0A6J1DF95 (syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)
HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 140/157 (89.17%), Postives = 149/157 (94.90%), Query Frame = 0
Query: 9 EHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTS 68
+ TPNMKQ++D+Y LNLG+TEE TNVSS+GTTGIMNSVYMD DP+RESR DSSTASTS
Sbjct: 418 DQTPNMKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTS 477
Query: 69 GSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 128
GSPWYHLRKDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV
Sbjct: 478 GSPWYHLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 537
Query: 129 FLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
F+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 538 FILAGEAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574
BLAST of Lcy10g006530 vs. ExPASy TrEMBL
Match:
A0A5D3CVZ5 (Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00300 PE=4 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 133/159 (83.65%), Postives = 147/159 (92.45%), Query Frame = 0
Query: 7 SIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTAS 66
SIE TP+MK +EDNY++ LG++EES +VSS+G+TGI +S+YMD GD RESR DSS AS
Sbjct: 447 SIERTPSMKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAAS 506
Query: 67 TSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 126
TSGSPWYHLRKDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL
Sbjct: 507 TSGSPWYHLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 566
Query: 127 NVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
NVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 567 NVFILAGEAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 605
BLAST of Lcy10g006530 vs. ExPASy TrEMBL
Match:
A0A5A7VC68 (Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00950 PE=4 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 133/159 (83.65%), Postives = 147/159 (92.45%), Query Frame = 0
Query: 7 SIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTAS 66
SIE TP+MK +EDNY++ LG++EES +VSS+G+TGI +S+YMD GD RESR DSS AS
Sbjct: 451 SIERTPSMKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAAS 510
Query: 67 TSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 126
TSGSPWYHLRKDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL
Sbjct: 511 TSGSPWYHLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 570
Query: 127 NVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
NVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 571 NVFILAGEAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 609
BLAST of Lcy10g006530 vs. ExPASy TrEMBL
Match:
A0A1S3CG39 (syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 133/159 (83.65%), Postives = 147/159 (92.45%), Query Frame = 0
Query: 7 SIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTAS 66
SIE TP+MK +EDNY++ LG++EES +VSS+G+TGI +S+YMD GD RESR DSS AS
Sbjct: 417 SIERTPSMKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAAS 476
Query: 67 TSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 126
TSGSPWYHLRKDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL
Sbjct: 477 TSGSPWYHLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 536
Query: 127 NVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
NVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 537 NVFILAGEAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 575
BLAST of Lcy10g006530 vs. NCBI nr
Match:
XP_022152900.1 (syndetin isoform X1 [Momordica charantia])
HSP 1 Score: 282.3 bits (721), Expect = 2.6e-72
Identity = 140/157 (89.17%), Postives = 149/157 (94.90%), Query Frame = 0
Query: 9 EHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTS 68
+ TPNMKQ++D+Y LNLG+TEE TNVSS+GTTGIMNSVYMD DP+RESR DSSTASTS
Sbjct: 418 DQTPNMKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTS 477
Query: 69 GSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 128
GSPWYHLRKDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV
Sbjct: 478 GSPWYHLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 537
Query: 129 FLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
F+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 538 FILAGEAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574
BLAST of Lcy10g006530 vs. NCBI nr
Match:
XP_022152901.1 (syndetin isoform X2 [Momordica charantia])
HSP 1 Score: 282.3 bits (721), Expect = 2.6e-72
Identity = 140/157 (89.17%), Postives = 149/157 (94.90%), Query Frame = 0
Query: 9 EHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTS 68
+ TPNMKQ++D+Y LNLG+TEE TNVSS+GTTGIMNSVYMD DP+RESR DSSTASTS
Sbjct: 418 DQTPNMKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTS 477
Query: 69 GSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 128
GSPWYHLRKDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV
Sbjct: 478 GSPWYHLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNV 537
Query: 129 FLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
F+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 538 FILAGEAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574
BLAST of Lcy10g006530 vs. NCBI nr
Match:
XP_038895533.1 (syndetin isoform X1 [Benincasa hispida])
HSP 1 Score: 279.3 bits (713), Expect = 2.2e-71
Identity = 139/159 (87.42%), Postives = 148/159 (93.08%), Query Frame = 0
Query: 7 SIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTAS 66
SIE T +MKQ EDN+++NLG+TEE NVSS+G+TGI NSVYMDGGD NRESR DSSTAS
Sbjct: 417 SIEQTRSMKQPEDNHDINLGDTEELTINVSSMGSTGITNSVYMDGGDSNRESRTDSSTAS 476
Query: 67 TSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 126
TSGSPWYHLRKDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL
Sbjct: 477 TSGSPWYHLRKDAIHFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 536
Query: 127 NVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
NVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 537 NVFILAGEAFCGVEAVEFRQKLKTVCENYYVAFHKQSMH 575
BLAST of Lcy10g006530 vs. NCBI nr
Match:
XP_038895534.1 (syndetin isoform X2 [Benincasa hispida])
HSP 1 Score: 279.3 bits (713), Expect = 2.2e-71
Identity = 139/159 (87.42%), Postives = 148/159 (93.08%), Query Frame = 0
Query: 7 SIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTAS 66
SIE T +MKQ EDN+++NLG+TEE NVSS+G+TGI NSVYMDGGD NRESR DSSTAS
Sbjct: 232 SIEQTRSMKQPEDNHDINLGDTEELTINVSSMGSTGITNSVYMDGGDSNRESRTDSSTAS 291
Query: 67 TSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 126
TSGSPWYHLRKDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL
Sbjct: 292 TSGSPWYHLRKDAIHFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 351
Query: 127 NVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
NVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 352 NVFILAGEAFCGVEAVEFRQKLKTVCENYYVAFHKQSMH 390
BLAST of Lcy10g006530 vs. NCBI nr
Match:
XP_008462106.1 (PREDICTED: syndetin [Cucumis melo])
HSP 1 Score: 271.2 bits (692), Expect = 6.1e-69
Identity = 133/159 (83.65%), Postives = 147/159 (92.45%), Query Frame = 0
Query: 7 SIEHTPNMKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTAS 66
SIE TP+MK +EDNY++ LG++EES +VSS+G+TGI +S+YMD GD RESR DSS AS
Sbjct: 417 SIERTPSMKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAAS 476
Query: 67 TSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 126
TSGSPWYHLRKDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL
Sbjct: 477 TSGSPWYHLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDL 536
Query: 127 NVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 166
NVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 537 NVFILAGEAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 575
BLAST of Lcy10g006530 vs. TAIR 10
Match:
AT2G27900.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )
HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 81/125 (64.80%), Postives = 99/125 (79.20%), Query Frame = 0
Query: 41 TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTS 100
+G +SV + ESR S+S SPWY+LRK++ +F+S+TLQRGR+NLWQLTTS
Sbjct: 474 SGTSSSVQLASNIAIDESRNSEDRVSSSESPWYYLRKESAAFVSETLQRGRRNLWQLTTS 533
Query: 101 RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFH 160
RVSVLLSS STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH
Sbjct: 534 RVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFH 593
Query: 161 KQSMH 166
+QSMH
Sbjct: 594 RQSMH 598
BLAST of Lcy10g006530 vs. TAIR 10
Match:
AT2G27900.2 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 81/125 (64.80%), Postives = 99/125 (79.20%), Query Frame = 0
Query: 41 TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLRKDAISFISQTLQRGRKNLWQLTTS 100
+G +SV + ESR S+S SPWY+LRK++ +F+S+TLQRGR+NLWQLTTS
Sbjct: 474 SGTSSSVQLASNIAIDESRNSEDRVSSSESPWYYLRKESAAFVSETLQRGRRNLWQLTTS 533
Query: 101 RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFH 160
RVSVLLSS STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH
Sbjct: 534 RVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFH 593
Query: 161 KQSMH 166
+QSMH
Sbjct: 594 RQSMH 598
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DJ46 | 1.3e-72 | 89.17 | syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1 | [more] |
A0A6J1DF95 | 1.3e-72 | 89.17 | syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1 | [more] |
A0A5D3CVZ5 | 3.0e-69 | 83.65 | Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00300 PE=4 ... | [more] |
A0A5A7VC68 | 3.0e-69 | 83.65 | Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00950 PE=4 ... | [more] |
A0A1S3CG39 | 3.0e-69 | 83.65 | syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G27900.1 | 8.8e-42 | 64.80 | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int... | [more] |
AT2G27900.2 | 8.8e-42 | 64.80 | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int... | [more] |