Lcy10g004800 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g004800
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTransposase
LocationChr10: 12643781 .. 12645507 (+)
RNA-Seq ExpressionLcy10g004800
SyntenyLcy10g004800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGAATGTAGCCCATAATGAATATATGGGTGAAATTCCATCAAATGGACCAGGACATGAGCCTTGCAAGCTAACTAAAGTAATGAAAGAAGATTACATGAGAAAAACAAATGTGAAGACACTCTTTTTTTATTAGAATAGGGTTGTTTAATATACCATTATACAAAGCAAGGTTTTTACAAGACTCGCTAAAATCCCACCAAGATCAACAGATACAACCAAACAAAAGCTTGGTTGAAAAAAAAAAGACACAGGAGCTAATTTTTCAAACAAAACTATACAAACACCAAATTTCAAAAGTATACTCTCAAAATCGAGCTACTTTTTCAGTGGGGCATTTCATCAAACATTTGGTGGGTGGACTCAAAGTTGGAAAACAATCCTCTAGAAATCCAACTTACCATTTTGATCCCACTTTGAGTCCACCCACCAAATGTTGGAAAATTTACGCTGAATCCTCTAGAAATGGGTCTTGAGTCCACTTTGATGAAATGCCCCACTAAAAAACAATCGTCTAGAAAACAATCCCCTAGAAATCCTCTAGAAATGGACCGCTGAATCTTTAAGAATGAGGATTCAAAATTTGAATCCTCTAGAAGAATGCAAACTAAAACTCAAAATCTGAATCCTCTAGAAATGGGTCGCTGAATCTTCAAGAACGCAAATTAAAATTCAATCACTGTGGAGGTCAGAAAACAATCACTCAAAAGAGAGAGAGGAGCGACGACAAGATACACGCATAGAGAGAGGAGCAACAGACGTTCAGTCGAGGGAAAGGACACAAGAGAAGTAAAGAGAAATTGGCGACCATTTTCAGTCGAGGGCGTTCGTTCAATCGAGAGAAAAAAGGTGTAGTTGGTCTCGTTCTTCAGTCGAATGCGTTCGTGCAGAGAGAGGAAGCAGCTGGCCTCGTTCTCACGCGGGGAAAACATGAGGGGGAAGAAGGGTGTTCAAAAATTTCATAACACGCGGGCCGGTCTTTTAGTTTTTATTTTTAATTTTGTTTTTCTTTCATAGCCAATTTTGAAAAATGCTATTCTAGAAAGCTATAAAAAGCCATTTTTCTTGTAGTGCCTGTTTTTAATCTGTCTACCTATTTGTTTATTCTTTGTTCTGTCATTTATTCAGCTTCAGCATAATTCTTATAAAACCAAATTATTGTTACCATCTTTGAAACCATTATAGAGTTACAAAAAATAGATAAAGTGGAAGCTTATTCGGGACTCGGATTGATAATATTACTTGCTGCAGACTGTGTATACTTGCACAGGAATTCTAGAGTCTTTTTAGATCATAATTTTACTCACTCTAGGAGCCCAACACCTAGCAACCGAGCCACTCTATGGAAGGAAGCAAGAAAAAGAAAAAATAAGGAATATTTTGATGACGACACTAGAGAACGCGCTAATCGGATTGTAAGTATATTAAGAAAGATATGATGTGAACCTTAAATTACATGTTTTCTAATCATGTGATACTTGGAAATGTTTTCGACAGGACGAGCTAGTTGTGACAAATCAAGGTCAATATATACTTACTGAAGCATTAGGCACACCAGAACATAGAGGGCGTGTTAGAGGAGTGGGTGAGTTTGTTTCACCATCCGTCTACTTCAATCTTCCTAGGACATAAAACTTGGGTCCACAATCCCAAAGCAAGGGTAAAACGAAAGGCAGTGGTTCAAAAAATTCAACAAAGGTAGAAAGTAATTCTTCAAGGACA

mRNA sequence

ATGCCAATGAATGTAGCCCATAATGAATATATGGGTGAAATTCCATCAAATGGACCAGGACATGAGCCTTGCAAGCTAACTAAAGACGAGCTAGTTGTGACAAATCAAGGTCAATATATACTTACTGAAGCATTAGGCACACCAGAACATAGAGGGCGTGTTAGAGGAGTGGGTGAGTTTGTTTCACCATCCGTCTACTTCAATCTTCCTAGGACATAAAACTTGGGTCCACAATCCCAAAGCAAGGGTAAAACGAAAGGCAGTGGTTCAAAAAATTCAACAAAGGTAGAAAGTAATTCTTCAAGGACA

Coding sequence (CDS)

ATGCCAATGAATGTAGCCCATAATGAATATATGGGTGAAATTCCATCAAATGGACCAGGACATGAGCCTTGCAAGCTAACTAAAGACGAGCTAGTTGTGACAAATCAAGGTCAATATATACTTACTGAAGCATTAGGCACACCAGAACATAGAGGGCGTGTTAGAGGAGTGGGTGAGTTTGTTTCACCATCCGTCTACTTCAATCTTCCTAGGACATAA

Protein sequence

MPMNVAHNEYMGEIPSNGPGHEPCKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPRT
Homology
[Close]
BLAST of Lcy10g004800 vs. ExPASy TrEMBL
Match: A0A1S3BRX5 (uncharacterized protein LOC103493028 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493028 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 231 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 278

[Close]
BLAST of Lcy10g004800 vs. ExPASy TrEMBL
Match: A0A5D3CYL9 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002480 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 231 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 278

[Close]
BLAST of Lcy10g004800 vs. ExPASy TrEMBL
Match: A0A0A0L021 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056570 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 153 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 200

[Close]
BLAST of Lcy10g004800 vs. ExPASy TrEMBL
Match: A0A1S4DZN2 (uncharacterized protein LOC103493028 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493028 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 231 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 278

[Close]
BLAST of Lcy10g004800 vs. ExPASy TrEMBL
Match: A0A6J1C2V2 (uncharacterized protein LOC111007859 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNL 70
           C    DEL   ++G+ ILTEALGT EH GRVRGVGEFVSPS+YFN+
Sbjct: 231 CAARIDELAAIHKGEDILTEALGTSEHSGRVRGVGEFVSPSLYFNV 276

[Close]
BLAST of Lcy10g004800 vs. NCBI nr
Match: XP_038895921.1 (uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895924.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895927.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP++++N+ +
Sbjct: 231 CAKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHYNVAK 278

[Close]
BLAST of Lcy10g004800 vs. NCBI nr
Match: XP_038895930.1 (uncharacterized protein LOC120084092 isoform X2 [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP++++N+ +
Sbjct: 231 CAKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHYNVAK 278

[Close]
BLAST of Lcy10g004800 vs. NCBI nr
Match: KAE8649224.1 (hypothetical protein Csa_014966 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 231 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 278

[Close]
BLAST of Lcy10g004800 vs. NCBI nr
Match: XP_031740251.1 (uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 235 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 282

[Close]
BLAST of Lcy10g004800 vs. NCBI nr
Match: XP_008451868.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_008451869.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_016901189.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >KAA0040180.1 uncharacterized protein E6C27_scaffold118G00160 [Cucumis melo var. makuwa] >TYK16450.1 uncharacterized protein E5676_scaffold21G002480 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 24  CKLTKDELVVTNQGQYILTEALGTPEHRGRVRGVGEFVSPSVYFNLPR 72
           C    DEL    +GQ ILTEALGTPEHRGR+RGVGEFVSP+++ N+ R
Sbjct: 231 CVKRIDELAAIRKGQDILTEALGTPEHRGRIRGVGEFVSPALHVNVAR 278

The following BLAST results are available for this feature:
BLAST of Lcy10g004800 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g004800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BRX55.6e-0964.58uncharacterized protein LOC103493028 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3CYL95.6e-0964.58ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0L0215.6e-0964.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056570 PE=4 SV=1[more]
A0A1S4DZN25.6e-0964.58uncharacterized protein LOC103493028 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1C2V29.6e-0967.39uncharacterized protein LOC111007859 isoform X4 OS=Momordica charantia OX=3673 G... [more]
BLAST of Lcy10g004800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895921.16.8e-0962.50uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_03889592... [more]
XP_038895930.16.8e-0962.50uncharacterized protein LOC120084092 isoform X2 [Benincasa hispida][more]
KAE8649224.11.2e-0864.58hypothetical protein Csa_014966 [Cucumis sativus][more]
XP_031740251.11.2e-0864.58uncharacterized protein LOC101213947 [Cucumis sativus][more]
XP_008451868.11.2e-0864.58PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_00... [more]
BLAST of Lcy10g004800 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g004800.1Lcy10g004800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016020 membrane
molecular_function GO:0008234 cysteine-type peptidase activity