Lcy10g004340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zinc finger CCCH domain-containing protein 2-like
Location	Chr10: 9817656 .. 9818402 (-)
RNA-Seq Expression	Lcy10g004340
Synteny	Lcy10g004340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCTGGAGTTCTGGCAAGGCGGTTGCGGCCGTGGTGATGGTCGTGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTTCATTCGGCGAGGTATCGGACCGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTATTTCTTTGCTCATTCGCCTTGCGAGTTTCGTCTTTTACCGCCAGTAGGTAATTTTCAAGGGGGTGGCGGCTCTTGTTCTTCACCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTACTAATCACTGTTGTTTCTTTTGTCATTGCGGCGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCAGAATGTCTCATCTCTCTCTGCTGCACTCGCCGCCTCTCTCACTGGGAAAGCCTCGGTCAATGAATGGATATTCGTCGATTTCGAGGTATAATCCTGATCAGTCTAAATTAAATGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCGATTGAATCCATGAATATCGACGACGCTAATGCCACTTTAGCCGCGGCTACTGCCTCCTCCGCCACCATCTCCGCCCCCAGACCAACGCCTTGGATCGATGTTTCATCCCCCAACGCCGAAAATCAACTGCAGTTTATTCTCTCACCTTCCACTCCAAATATCTCTTCCGCACCAGTGAACAAGTGTACCGTCGACAATGGATGGGCCTTCGCCTCCGGTCCCGATCTCGGATGGGTTAACGATCTGCTGATGTAA

mRNA sequence

ATGTGTCTGGAGTTCTGGCAAGGCGGTTGCGGCCGTGGTGATGGTCGTGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTTCATTCGGCGAGGTATCGGACCGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTATTTCTTTGCTCATTCGCCTTGCGAGTTTCGTCTTTTACCGCCAGTAGGTAATTTTCAAGGGGGTGGCGGCTCTTGTTCTTCACCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTACTAATCACTGTTGTTTCTTTTGTCATTGCGGCGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCAGAATGTCTCATCTCTCTCTGCTGCACTCGCCGCCTCTCTCACTGGGAAAGCCTCGGTCAATGAATGGATATTCGTCGATTTCGAGGTATAATCCTGATCAGTCTAAATTAAATGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCGATTGAATCCATGAATATCGACGACGCTAATGCCACTTTAGCCGCGGCTACTGCCTCCTCCGCCACCATCTCCGCCCCCAGACCAACGCCTTGGATCGATGTTTCATCCCCCAACGCCGAAAATCAACTGCAGTTTATTCTCTCACCTTCCACTCCAAATATCTCTTCCGCACCAGTGAACAAGTGTACCGTCGACAATGGATGGGCCTTCGCCTCCGGTCCCGATCTCGGATGGGTTAACGATCTGCTGATGTAA

Coding sequence (CDS)

ATGTGTCTGGAGTTCTGGCAAGGCGGTTGCGGCCGTGGTGATGGTCGTGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTTCATTCGGCGAGGTATCGGACCGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTATTTCTTTGCTCATTCGCCTTGCGAGTTTCGTCTTTTACCGCCAGTAGGTAATTTTCAAGGGGGTGGCGGCTCTTGTTCTTCACCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTACTAATCACTGTTGTTTCTTTTGTCATTGCGGCGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCAGAATGTCTCATCTCTCTCTGCTGCACTCGCCGCCTCTCTCACTGGGAAAGCCTCGGTCAATGAATGGATATTCGTCGATTTCGAGGTATAATCCTGATCAGTCTAAATTAAATGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCGATTGAATCCATGAATATCGACGACGCTAATGCCACTTTAGCCGCGGCTACTGCCTCCTCCGCCACCATCTCCGCCCCCAGACCAACGCCTTGGATCGATGTTTCATCCCCCAACGCCGAAAATCAACTGCAGTTTATTCTCTCACCTTCCACTCCAAATATCTCTTCCGCACCAGTGAACAAGTGTACCGTCGACAATGGATGGGCCTTCGCCTCCGGTCCCGATCTCGGATGGGTTAACGATCTGCTGATGTAA

Protein sequence

MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLLPPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLHSPPLSLGKPRSMNGYSSISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAPVNKCTVDNGWAFASGPDLGWVNDLLM

Homology

[Close]

BLAST of Lcy10g004340 vs. ExPASy Swiss-Prot
Match: Q9ZWA1 (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=TZF4 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.0e-36
Identity = 115/290 (39.66%), Postives = 154/290 (53.10%), Query Frame = 0


Query: 1   MCLEFWQGG-CGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRL 60
           +C EF +GG C RGD  EFAHGVFECWLH  RYRTEACKDGK+CKRKV FFAHSP + R+
Sbjct: 127 VCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRV 186

Query: 61  LPPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLF-RMSHLSL 120
           LPP    +   G  +SP        S A  N CC FC      +SSPTSTL   +SHLS 
Sbjct: 187 LPP----ENVSGVSASP--------SPAAKNPCCLFC------SSSPTSTLLGNLSHLSR 246

Query: 121 LH--SPPLS-LGKPRSMNGYSSISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDA-- 180
               SPP+S   K  + +   + +      +   G ++YKD L+EL++S++SM++ +A  
Sbjct: 247 SPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQ 306

Query: 181 ----------NATLAAATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPN-ISSAP 240
                      +  AAA ASS  +S  R    + +      + LQF LSPSTP+ ++++P
Sbjct: 307 ASSSSPVTTPVSAAAAAFASSCGLSNQR----LHLQQQQPSSPLQFALSPSTPSYLTNSP 366

Query: 241 ---------------VNKCT----------VDNGWAFASGPDLGWVNDLL 248
                          +N  T          +++G      PDLGWVNDLL
Sbjct: 367 QANFFSDDFTPRRRQMNDFTAMTAVRENTNIEDG--SCGDPDLGWVNDLL 392

[Close]

BLAST of Lcy10g004340 vs. ExPASy Swiss-Prot
Match: Q9FKW2 (Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana OX=3702 GN=TZF5 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-32
Identity = 110/288 (38.19%), Postives = 147/288 (51.04%), Query Frame = 0


Query: 1   MCLEFWQ-GGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRL 60
           +C EF + G C RGD   FAHGVFECWLH +RYRTEACKDGK+CKRKV FFAHSP + R+
Sbjct: 105 VCPEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRV 164

Query: 61  LPPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLL 120
           LPP       GG   SP+   +++ S    N CC FC      + SPTSTL  +S  S  
Sbjct: 165 LPPSPENHISGGCGGSPSSSPASVLSNK-NNRCCLFC------SHSPTSTLLNLSR-SPS 224

Query: 121 HSPPLSLGKPRSMNGYSSISRYNPDQSKLNGVLSYKD--ALTELM--SSIESMNIDDANA 180
            SPPLS       + +S +SR     + LN ++S  D  +LTE +  SS   + +  + A
Sbjct: 225 SSPPLS--PADKADAFSRLSRRR--TAVLNELISSLDSLSLTEALAASSSSPVTMPISTA 284

Query: 181 TLAAATASSATISAPRPTPWIDVSSPNAENQ----LQFILSPS----------------- 240
           T+ A++  S+     R  PW+DV   + + Q    L+F LSPS                 
Sbjct: 285 TMIASSNLSSNHHHHRLPPWLDVGDRDLQLQQSSPLRFALSPSSTPSYLHGQLQPPPSSF 344

Query: 241 -----TP--------NISSAPVNKCTVDNGWAFASGP--DLGWVNDLL 248
                TP        ++++A   +    N +   S    DLGWVNDLL
Sbjct: 345 FGDEFTPRGGRLSDFSVAAAAAAQARDKNSFEVGSSGDLDLGWVNDLL 380

[Close]

BLAST of Lcy10g004340 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 64/136 (47.06%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 2   CLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLLP 61
           C +F +GGC RGD  EFAHGVFECWLH ARYRT+ CKDG  C+R+V FFAH+P + R+LP
Sbjct: 123 CPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLP 182

Query: 62  PV---------GNFQGGGGSCSSPNKKS---SNLRSAAGTNHCCFFCHCGGAATSSPTST 121
           P          G   GG G+ +SP  +S   S LR  A  ++           +SSPTST
Sbjct: 183 PSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYL-----TKSIMSSSPTST 242

Query: 122 LFRMSHLSLLHSPPLS 126
           L          SPPLS
Sbjct: 243 LVSPPRSPPSESPPLS 253

[Close]

BLAST of Lcy10g004340 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 2   CLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLLP 61
           C EF +G C RGD  EF+HGVFECWLH ARYRT+ CKDG NC+R+V FFAHSP + R+LP
Sbjct: 124 CPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLP 183

[Close]

BLAST of Lcy10g004340 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 59/127 (46.46%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 2   CLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLLP 61
           C +F +GGC RGD  E+AHGVFECWLH ARYRT+ CKDG  C+R+V FFAH+P + R+LP
Sbjct: 122 CPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLP 181

Query: 62  PVGNFQGGGGSCSSPNKKS---SNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSL 121
                       SSP  +S   S LR  A  ++           +SSPTSTL        
Sbjct: 182 --AQQSSPRSVASSPLAESYDGSPLRRQAFESYL-----TKTIMSSSPTSTLMSPPKSPP 241

Query: 122 LHSPPLS 126
             SPPLS
Sbjct: 242 SESPPLS 241

[Close]

BLAST of Lcy10g004340 vs. ExPASy TrEMBL
Match: A0A6J1JFD9 (zinc finger CCCH domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486401 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.5e-109
Identity = 209/254 (82.28%), Postives = 215/254 (84.65%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 140 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 199

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLH 120
           PPV NFQ GGGSCSSPNKKSSNLRSAAG+NHCC FCHCGGAATSSPTSTLF MSHLS  H
Sbjct: 200 PPVSNFQ-GGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPH 259

Query: 121 SPPLSLGKPRSMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
           SPPLS G PRSMNG+S ISRY NPDQSKL GVLSYKDALTELMSSIESMNIDDANATLAA
Sbjct: 260 SPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAA 319

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAPVN-----KCTVDNGWAF 240
           A      I APRPTPWIDVSS N E++LQFILSPSTPNIS+A  N     K   DNGWA 
Sbjct: 320 A------IPAPRPTPWIDVSSLNPEDELQFILSPSTPNISAASANLSCEHKTNADNGWAS 379

Query: 241 ASGPDLGWVNDLLM 249
            SGPDLGWVNDLLM
Sbjct: 380 TSGPDLGWVNDLLM 386

[Close]

BLAST of Lcy10g004340 vs. ExPASy TrEMBL
Match: A0A6J1EXC0 (zinc finger CCCH domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437026 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.3e-109
Identity = 209/253 (82.61%), Postives = 215/253 (84.98%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 139 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 198

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLH 120
           PPV NFQ GGGSCSSPNKKSSNLRSAAG+NHCC FCHCGGAATSSPTSTLF MSHLS  H
Sbjct: 199 PPVSNFQ-GGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPH 258

Query: 121 SPPLSLGKPRSMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
           SPPLS G PRSMNG+S ISRY NPDQSKL GVLSYKDALTELMSSIESMNIDDANATLAA
Sbjct: 259 SPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAA 318

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAP----VNKCTVDNGWAFA 240
           A      I APRPTPWIDVSS N E+QLQFILSPSTPNIS+A      +K   DNGWA  
Sbjct: 319 A------IPAPRPTPWIDVSSLNPEDQLQFILSPSTPNISAAANLTCEHKSNADNGWAST 378

Query: 241 SGPDLGWVNDLLM 249
           SGPDLGWVNDLLM
Sbjct: 379 SGPDLGWVNDLLM 384

[Close]

BLAST of Lcy10g004340 vs. ExPASy TrEMBL
Match: A0A5D3C764 (Zinc finger CCCH domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003140 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 6.5e-97
Identity = 199/259 (76.83%), Postives = 214/259 (82.63%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 84  MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 143

Query: 61  PPVGNFQGGGGSCSSPNKK--SSNLRS---AAGTNHCCFFCHCGG-AATSSPTSTLFRMS 120
           PPV N+Q   GSCSSPN K  SS+LRS   A+ +NHCC FCHCGG AATSSPTSTLF MS
Sbjct: 144 PPVSNYQ--SGSCSSPNNKRSSSSLRSASTASASNHCCLFCHCGGAAATSSPTSTLFGMS 203

Query: 121 HLSLLHSPPLSLGKPRSMNGYSSISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDAN 180
           HLS  HSPP S GKP  +NG+S ISRYNPDQSKLNGVLSYKDALTELMSSIESMN+DDAN
Sbjct: 204 HLSPPHSPPHSPGKP--INGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNMDDAN 263

Query: 181 ATL-AAATASSATISAPRPT-PWIDVSSPNAENQLQFILSPSTPNISSAPVNKCTVD--- 240
           ATL AAA A++A  S PR T PWIDVSS N E+QLQF+LSPSTPN+S+A VN  +VD   
Sbjct: 264 ATLAAAAAAATAAASGPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASVN-FSVDQNN 323

Query: 241 NGWAFASGPDLGWVNDLLM 249
           NGWA AS PDLGWVNDLLM
Sbjct: 324 NGWASASDPDLGWVNDLLM 337

[Close]

BLAST of Lcy10g004340 vs. ExPASy TrEMBL
Match: A0A1S3C0P5 (zinc finger CCCH domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103495483 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 6.5e-97
Identity = 199/259 (76.83%), Postives = 214/259 (82.63%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 84  MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 143

Query: 61  PPVGNFQGGGGSCSSPNKK--SSNLRS---AAGTNHCCFFCHCGG-AATSSPTSTLFRMS 120
           PPV N+Q   GSCSSPN K  SS+LRS   A+ +NHCC FCHCGG AATSSPTSTLF MS
Sbjct: 144 PPVSNYQ--SGSCSSPNNKRSSSSLRSASTASASNHCCLFCHCGGAAATSSPTSTLFGMS 203

Query: 121 HLSLLHSPPLSLGKPRSMNGYSSISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDAN 180
           HLS  HSPP S GKP  +NG+S ISRYNPDQSKLNGVLSYKDALTELMSSIESMN+DDAN
Sbjct: 204 HLSPPHSPPHSPGKP--INGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNMDDAN 263

Query: 181 ATL-AAATASSATISAPRPT-PWIDVSSPNAENQLQFILSPSTPNISSAPVNKCTVD--- 240
           ATL AAA A++A  S PR T PWIDVSS N E+QLQF+LSPSTPN+S+A VN  +VD   
Sbjct: 264 ATLAAAAAAATAAASGPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASVN-FSVDQNN 323

Query: 241 NGWAFASGPDLGWVNDLLM 249
           NGWA AS PDLGWVNDLLM
Sbjct: 324 NGWASASDPDLGWVNDLLM 337

[Close]

BLAST of Lcy10g004340 vs. ExPASy TrEMBL
Match: A0A6J1GKP3 (zinc finger CCCH domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111454880 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.3e-94
Identity = 185/254 (72.83%), Postives = 204/254 (80.31%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC +F +GGC RGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 115 MCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 174

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRS-AAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLL 120
           PPV NFQ  GGSCSSPNK+SS LRS AAG+NH C FCHCGGAATSSPTSTL  MSHLS  
Sbjct: 175 PPVSNFQ--GGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPP 234

Query: 121 HSPPLSLGKPRSMNGYSSISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
            SPPLS  KP+S+NG+S  SRYNPD SKLNGV+SYKD++TELM+SIESMNID+ NATLAA
Sbjct: 235 LSPPLSPVKPQSLNGFSPFSRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNATLAA 294

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAPV-----NKCTVDNGWAF 240
           +       ++ +  PWIDVSS N E+QLQF+LSPSTPN S+A V     NK   DNGWA 
Sbjct: 295 S-------ASRQRIPWIDVSSLNTEDQLQFVLSPSTPNGSAASVNFSVNNKGNADNGWAS 354

Query: 241 ASGPDLGWVNDLLM 249
           AS PDLGWVNDLLM
Sbjct: 355 ASDPDLGWVNDLLM 359

[Close]

BLAST of Lcy10g004340 vs. NCBI nr
Match: XP_022989282.1 (zinc finger CCCH domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 405.6 bits (1041), Expect = 3.1e-109
Identity = 209/254 (82.28%), Postives = 215/254 (84.65%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 140 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 199

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLH 120
           PPV NFQ GGGSCSSPNKKSSNLRSAAG+NHCC FCHCGGAATSSPTSTLF MSHLS  H
Sbjct: 200 PPVSNFQ-GGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPH 259

Query: 121 SPPLSLGKPRSMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
           SPPLS G PRSMNG+S ISRY NPDQSKL GVLSYKDALTELMSSIESMNIDDANATLAA
Sbjct: 260 SPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAA 319

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAPVN-----KCTVDNGWAF 240
           A      I APRPTPWIDVSS N E++LQFILSPSTPNIS+A  N     K   DNGWA 
Sbjct: 320 A------IPAPRPTPWIDVSSLNPEDELQFILSPSTPNISAASANLSCEHKTNADNGWAS 379

Query: 241 ASGPDLGWVNDLLM 249
            SGPDLGWVNDLLM
Sbjct: 380 TSGPDLGWVNDLLM 386

[Close]

BLAST of Lcy10g004340 vs. NCBI nr
Match: XP_023531320.1 (zinc finger CCCH domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.2 bits (1040), Expect = 4.0e-109
Identity = 209/254 (82.28%), Postives = 214/254 (84.25%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 137 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 196

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLH 120
           PPV NFQ GGGSCSSPNKKSSNLRSAAG+NHCC FCHCGGAATSSPTSTLF MSHLS  H
Sbjct: 197 PPVSNFQ-GGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPH 256

Query: 121 SPPLSLGKPRSMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
           SPPLS G PRSMNG+S ISRY NPDQSKL GVLSYKDALTELMSSIESMNIDDANATLAA
Sbjct: 257 SPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAA 316

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAPVN-----KCTVDNGWAF 240
           A      I APRPTPWIDVSS N E+QLQFILSPSTPN S+A  N     K   DNGWA 
Sbjct: 317 A------IPAPRPTPWIDVSSLNPEDQLQFILSPSTPNFSAASANLSCEHKSNADNGWAS 376

Query: 241 ASGPDLGWVNDLLM 249
            SGPDLGWVNDLLM
Sbjct: 377 TSGPDLGWVNDLLM 383

[Close]

BLAST of Lcy10g004340 vs. NCBI nr
Match: XP_022930620.1 (zinc finger CCCH domain-containing protein 2-like [Cucurbita moschata] >KAG7022951.1 Zinc finger CCCH domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404.4 bits (1038), Expect = 6.9e-109
Identity = 209/253 (82.61%), Postives = 215/253 (84.98%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 139 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 198

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLH 120
           PPV NFQ GGGSCSSPNKKSSNLRSAAG+NHCC FCHCGGAATSSPTSTLF MSHLS  H
Sbjct: 199 PPVSNFQ-GGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPH 258

Query: 121 SPPLSLGKPRSMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
           SPPLS G PRSMNG+S ISRY NPDQSKL GVLSYKDALTELMSSIESMNIDDANATLAA
Sbjct: 259 SPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAA 318

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAP----VNKCTVDNGWAFA 240
           A      I APRPTPWIDVSS N E+QLQFILSPSTPNIS+A      +K   DNGWA  
Sbjct: 319 A------IPAPRPTPWIDVSSLNPEDQLQFILSPSTPNISAAANLTCEHKSNADNGWAST 378

Query: 241 SGPDLGWVNDLLM 249
           SGPDLGWVNDLLM
Sbjct: 379 SGPDLGWVNDLLM 384

[Close]

BLAST of Lcy10g004340 vs. NCBI nr
Match: KAG6589252.1 (Zinc finger CCCH domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 402.9 bits (1034), Expect = 2.0e-108
Identity = 208/253 (82.21%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 140 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 199

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLLH 120
           PPV NFQGGG  CSSPNKKSSNLRSAAG+NHCC FCHCGGAATSSPTSTLF MSHLS  H
Sbjct: 200 PPVSNFQGGG--CSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPH 259

Query: 121 SPPLSLGKPRSMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAA 180
           SPPLS G PRSMNG+S ISRY NPDQSKL GVLSYKDALTELMSSIESMNIDDANATLAA
Sbjct: 260 SPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAA 319

Query: 181 ATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPNISSAP----VNKCTVDNGWAFA 240
           A      I APRPTPWIDVSS N E+QLQFILSPSTPNIS+A      +K   DNGWA  
Sbjct: 320 A------IPAPRPTPWIDVSSLNPEDQLQFILSPSTPNISAAANLSCEHKSNADNGWAST 379

Query: 241 SGPDLGWVNDLLM 249
           SGPDLGWVNDLLM
Sbjct: 380 SGPDLGWVNDLLM 384

[Close]

BLAST of Lcy10g004340 vs. NCBI nr
Match: XP_038887520.1 (zinc finger CCCH domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 367.5 bits (942), Expect = 9.3e-98
Identity = 199/258 (77.13%), Postives = 213/258 (82.56%), Query Frame = 0


Query: 1   MCLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 60
           MC EF +GGCGRGDG EFAHGVFECWLH ARYRTEACKDGKNCKRKV FFAHSP E RLL
Sbjct: 135 MCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLL 194

Query: 61  PPVGNFQGGGGSCSSPNKKSSNLRSA-AGTNHCCFFCHCGG--AATSSPTSTLFRMSHLS 120
           PPV NFQ GGGSCSSPNK++S LRSA AG+NHCC  CHCGG  AATSSPTSTLF MSHLS
Sbjct: 195 PPVSNFQ-GGGSCSSPNKRNSTLRSASAGSNHCCLLCHCGGAAAATSSPTSTLFGMSHLS 254

Query: 121 LLHSPPLSLGKPR-SMNGYSSISRY-NPDQSKLNGVLSYKDALTELMSSIESMNIDDANA 180
              SPP+S GKPR SMNG+S ISRY NPDQSK NGVLSYKDALTELMSSIESMNIDDANA
Sbjct: 255 PPLSPPVSPGKPRSSMNGFSPISRYNNPDQSKFNGVLSYKDALTELMSSIESMNIDDANA 314

Query: 181 TLAAATASSATISAPRPT-PWIDVSSPNAENQLQFILSPSTPNISSA----PVNKCTVDN 240
           TLAAA A+    ++PR T PWIDVSS N E+QLQF+LSPSTPN+S+A    PV     +N
Sbjct: 315 TLAAAAAA----ASPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASMNFPVENKGNNN 374

Query: 241 GWAFASGPDLGWVNDLLM 249
           GW  AS PDLGWVNDLLM
Sbjct: 375 GWTSASDPDLGWVNDLLM 387

[Close]

BLAST of Lcy10g004340 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-37
Identity = 115/290 (39.66%), Postives = 154/290 (53.10%), Query Frame = 0


Query: 1   MCLEFWQGG-CGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRL 60
           +C EF +GG C RGD  EFAHGVFECWLH  RYRTEACKDGK+CKRKV FFAHSP + R+
Sbjct: 127 VCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRV 186

Query: 61  LPPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLF-RMSHLSL 120
           LPP    +   G  +SP        S A  N CC FC      +SSPTSTL   +SHLS 
Sbjct: 187 LPP----ENVSGVSASP--------SPAAKNPCCLFC------SSSPTSTLLGNLSHLSR 246

Query: 121 LH--SPPLS-LGKPRSMNGYSSISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDA-- 180
               SPP+S   K  + +   + +      +   G ++YKD L+EL++S++SM++ +A  
Sbjct: 247 SPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQ 306

Query: 181 ----------NATLAAATASSATISAPRPTPWIDVSSPNAENQLQFILSPSTPN-ISSAP 240
                      +  AAA ASS  +S  R    + +      + LQF LSPSTP+ ++++P
Sbjct: 307 ASSSSPVTTPVSAAAAAFASSCGLSNQR----LHLQQQQPSSPLQFALSPSTPSYLTNSP 366

Query: 241 ---------------VNKCT----------VDNGWAFASGPDLGWVNDLL 248
                          +N  T          +++G      PDLGWVNDLL
Sbjct: 367 QANFFSDDFTPRRRQMNDFTAMTAVRENTNIEDG--SCGDPDLGWVNDLL 392

[Close]

BLAST of Lcy10g004340 vs. TAIR 10
Match: AT5G44260.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-33
Identity = 110/288 (38.19%), Postives = 147/288 (51.04%), Query Frame = 0


Query: 1   MCLEFWQ-GGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRL 60
           +C EF + G C RGD   FAHGVFECWLH +RYRTEACKDGK+CKRKV FFAHSP + R+
Sbjct: 105 VCPEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRV 164

Query: 61  LPPVGNFQGGGGSCSSPNKKSSNLRSAAGTNHCCFFCHCGGAATSSPTSTLFRMSHLSLL 120
           LPP       GG   SP+   +++ S    N CC FC      + SPTSTL  +S  S  
Sbjct: 165 LPPSPENHISGGCGGSPSSSPASVLSNK-NNRCCLFC------SHSPTSTLLNLSR-SPS 224

Query: 121 HSPPLSLGKPRSMNGYSSISRYNPDQSKLNGVLSYKD--ALTELM--SSIESMNIDDANA 180
            SPPLS       + +S +SR     + LN ++S  D  +LTE +  SS   + +  + A
Sbjct: 225 SSPPLS--PADKADAFSRLSRRR--TAVLNELISSLDSLSLTEALAASSSSPVTMPISTA 284

Query: 181 TLAAATASSATISAPRPTPWIDVSSPNAENQ----LQFILSPS----------------- 240
           T+ A++  S+     R  PW+DV   + + Q    L+F LSPS                 
Sbjct: 285 TMIASSNLSSNHHHHRLPPWLDVGDRDLQLQQSSPLRFALSPSSTPSYLHGQLQPPPSSF 344

Query: 241 -----TP--------NISSAPVNKCTVDNGWAFASGP--DLGWVNDLL 248
                TP        ++++A   +    N +   S    DLGWVNDLL
Sbjct: 345 FGDEFTPRGGRLSDFSVAAAAAAQARDKNSFEVGSSGDLDLGWVNDLL 380

[Close]

BLAST of Lcy10g004340 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-21
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 2   CLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLLP 61
           C EF +G C RGD  EF+HGVFECWLH ARYRT+ CKDG NC+R+V FFAHSP + R+LP
Sbjct: 124 CPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLP 183

[Close]

BLAST of Lcy10g004340 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-20
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 2   CLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL 61
           C +F +GGC +GD  EFAHGVFECWLH ARYRT+ CKDG NC RK+ FFAHSP + R L
Sbjct: 125 CPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFL 183

[Close]

BLAST of Lcy10g004340 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 2   CLEFWQGGCGRGDGREFAHGVFECWLHSARYRTEACKDGKNCKRKVYFFAHSPCEFRLL- 61
           C EF +G C RGD  EF+HGVFECWLH +RYRT+ CKDG +C+R++ FFAH+  + R+L 
Sbjct: 136 CPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLP 195

Query: 62  ----PPVGNFQGGGGSCS--------SPNKKSSNLRSAAG---TNHCCFFCHCGGAATSS 120
               P +G F G   S +        SP  +S  L  + G    +      + GG + SS
Sbjct: 196 CSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLNGGGCSWSS 255

The following BLAST results are available for this feature:

BLAST of Lcy10g004340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZWA1	8.0e-36	39.66	Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FKW2	4.1e-32	38.19	Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	1.3e-22	47.06	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]
O82199	1.1e-19	68.33	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	1.8e-19	46.46	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of Lcy10g004340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JFD9	1.5e-109	82.28	zinc finger CCCH domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1EXC0	3.3e-109	82.61	zinc finger CCCH domain-containing protein 2-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A5D3C764	6.5e-97	76.83	Zinc finger CCCH domain-containing protein 2-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3C0P5	6.5e-97	76.83	zinc finger CCCH domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1GKP3	2.3e-94	72.83	zinc finger CCCH domain-containing protein 2-like OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of Lcy10g004340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989282.1	3.1e-109	82.28	zinc finger CCCH domain-containing protein 2-like [Cucurbita maxima]	[more]
XP_023531320.1	4.0e-109	82.28	zinc finger CCCH domain-containing protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930620.1	6.9e-109	82.61	zinc finger CCCH domain-containing protein 2-like [Cucurbita moschata] >KAG70229...	[more]
KAG6589252.1	2.0e-108	82.21	Zinc finger CCCH domain-containing protein 2, partial [Cucurbita argyrosperma su...	[more]
XP_038887520.1	9.3e-98	77.13	zinc finger CCCH domain-containing protein 2-like [Benincasa hispida]	[more]

BLAST of Lcy10g004340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03790.1	5.7e-37	39.66	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G44260.1	2.9e-33	38.19	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	7.5e-21	68.33	CCCH-type zinc finger family protein	[more]
AT4G29190.1	2.2e-20	67.80	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	1.3e-17	39.55	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14493:SF95	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 61	coord: 2..215
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 2..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004340.1	Lcy10g004340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding