Lcy10g004220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr10: 9074002 .. 9074343 (+)
RNA-Seq Expression	Lcy10g004220
Synteny	Lcy10g004220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTCGTAATCCTTGAGGGTGATATGATCCTTTTAGATGTTGTACCACTTCTGGATCCTGATCTTCTCGGCCCTGGTTCCGGTCTGGGCGGCGACGAGCTTCTTCAAGTCGCCGATCGTGTCGTCCTCGTTGCACTTCACCCGGACCTTCTTCCCGAGACGATCATTGAGGACCACCTCGATCATCCTCGCCCTTCTGAAAATCGAGAAATTCGAAACCCTAACGATTTGAGAGAATATCGTGCATCTGAAGAAAATTTGGGAATTCAAGGCCGTTTATATAGCGAAGGAATAAAGGGGTGCGTGGTGGACACGCATCTTGAAAACGCGTTTATCTAG

mRNA sequence

ATGGATCTCGTAATCCTTGAGGGTGATATGATCCTTTTAGATGTTGTACCACTTCTGGATCCTGATCTTCTCGGCCCTGGTTCCGGTCTGGGCGGCGACGAGCTTCTTCAAGTCGCCGATCGTGTCGTCCTCGTTGCACTTCACCCGGACCTTCTTCCCGAGACGATCATTGAGGACCACCTCGATCATCCTCGCCCTTCTGAAAATCGAGAAATTCGAAACCCTAACGATTTGAGAGAATATCGTGCATCTGAAGAAAATTTGGGAATTCAAGGCCGTTTATATAGCGAAGGAATAAAGGGGTGCGTGGTGGACACGCATCTTGAAAACGCGTTTATCTAG

Coding sequence (CDS)

ATGGATCTCGTAATCCTTGAGGGTGATATGATCCTTTTAGATGTTGTACCACTTCTGGATCCTGATCTTCTCGGCCCTGGTTCCGGTCTGGGCGGCGACGAGCTTCTTCAAGTCGCCGATCGTGTCGTCCTCGTTGCACTTCACCCGGACCTTCTTCCCGAGACGATCATTGAGGACCACCTCGATCATCCTCGCCCTTCTGAAAATCGAGAAATTCGAAACCCTAACGATTTGAGAGAATATCGTGCATCTGAAGAAAATTTGGGAATTCAAGGCCGTTTATATAGCGAAGGAATAAAGGGGTGCGTGGTGGACACGCATCTTGAAAACGCGTTTATCTAG

Protein sequence

MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDHLDHPRPSENREIRNPNDLREYRASEENLGIQGRLYSEGIKGCVVDTHLENAFI

Homology

[Close]

BLAST of Lcy10g004220 vs. ExPASy TrEMBL
Match: A0A059ACL3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00925 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.0e-14
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
          +DLV+LEGD++L+DVVPLLD DL+G G+ LGG +LL+VAD VVLVALHP LLP+ +++ H
Sbjct: 18 VDLVVLEGDVVLVDVVPLLDSDLVGAGARLGGHQLLEVADGVVLVALHPHLLPQPVVQHH 77

Query: 61 LDHPR 66
          L H R
Sbjct: 78 LYHLR 82

[Close]

BLAST of Lcy10g004220 vs. ExPASy TrEMBL
Match: A0A5N6PAU4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_13416 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1   MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
           ++LV+LEGDMIL+ VVPLLDPDL+  GSGL  +ELLQVAD VV+V LH +LLP+ I++ H
Sbjct: 95  VNLVVLEGDMILVYVVPLLDPDLVSTGSGLSCNELLQVADGVVIVTLHANLLPQAIVQHH 154

Query: 61  LDHPR 66
           LDH R
Sbjct: 155 LDHLR 159

[Close]

BLAST of Lcy10g004220 vs. ExPASy TrEMBL
Match: A0A6M2FCY3 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
          M+LVILEG+M+ +DVVPLLDPDLL  G+GL   ELL+VADRVV+VALH   L +TI++ H
Sbjct: 24 MNLVILEGNMVFIDVVPLLDPDLLSSGTGLCRHELLEVADRVVVVALHSHFLSQTIVQHH 83

Query: 61 LDH 64
          L H
Sbjct: 84 LQH 86

[Close]

BLAST of Lcy10g004220 vs. ExPASy TrEMBL
Match: A0A7S1CR20 (Hypothetical protein (Fragment) OS=Bicosoecida sp. CB-2014 OX=1486930 GN=BSP0115_LOCUS17895 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
           +DLV+ + D++L++ VPLLD  LLGP + L  D+LLQVADRVV VALHPDLL E ++ D 
Sbjct: 51  VDLVVFQCDVVLVNRVPLLDAQLLGPRARLRRDQLLQVADRVVGVALHPDLLAEAVVADD 110

Query: 61  LDH 64
           LDH
Sbjct: 111 LDH 113

[Close]

BLAST of Lcy10g004220 vs. ExPASy TrEMBL
Match: C6SXJ1 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.0e-10
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
           +DLVILE D+IL+  VPLLD DL+G  + L   +LLQVAD V++VALH  LLP++I++ H
Sbjct: 78  VDLVILESDVILVYGVPLLDADLVGSCARLSRHQLLQVADGVIVVALHAHLLPQSIVQHH 137

Query: 61  LDHPRPSEN 70
           LDH R + N
Sbjct: 138 LDHLRDANN 146

[Close]

BLAST of Lcy10g004220 vs. NCBI nr
Match: KCW51381.1 (hypothetical protein EUGRSUZ_J00925 [Eucalyptus grandis])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
          +DLV+LEGD++L+DVVPLLD DL+G G+ LGG +LL+VAD VVLVALHP LLP+ +++ H
Sbjct: 18 VDLVVLEGDVVLVDVVPLLDSDLVGAGARLGGHQLLEVADGVVLVALHPHLLPQPVVQHH 77

Query: 61 LDHPR 66
          L H R
Sbjct: 78 LYHLR 82

[Close]

BLAST of Lcy10g004220 vs. NCBI nr
Match: KAD5961943.1 (hypothetical protein E3N88_13416 [Mikania micrantha])

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-13
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1   MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
           ++LV+LEGDMIL+ VVPLLDPDL+  GSGL  +ELLQVAD VV+V LH +LLP+ I++ H
Sbjct: 95  VNLVVLEGDMILVYVVPLLDPDLVSTGSGLSCNELLQVADGVVIVTLHANLLPQAIVQHH 154

Query: 61  LDHPR 66
           LDH R
Sbjct: 155 LDHLR 159

[Close]

BLAST of Lcy10g004220 vs. NCBI nr
Match: KAF9676680.1 (hypothetical protein SADUNF_Sadunf08G0028200 [Salix dunnii])

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-11
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
          ++LVILEG+M+L+DVVPLLDPDLL  G+GL   +LL+V+DRVV+VALH   L +TI++ H
Sbjct: 15 VNLVILEGNMVLVDVVPLLDPDLLSSGTGLCRYKLLEVSDRVVVVALHSHFLSQTIVQHH 74

Query: 61 LDH 64
          L H
Sbjct: 75 LQH 77

[Close]

BLAST of Lcy10g004220 vs. NCBI nr
Match: ACU13964.1 (unknown [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
           +DLVILE D+IL+  VPLLD DL+G  + L   +LLQVAD V++VALH  LLP++I++ H
Sbjct: 78  VDLVILESDVILVYGVPLLDADLVGSCARLSRHQLLQVADGVIVVALHAHLLPQSIVQHH 137

Query: 61  LDHPRPSEN 70
           LDH R + N
Sbjct: 138 LDHLRDANN 146

[Close]

BLAST of Lcy10g004220 vs. NCBI nr
Match: ACU18493.1 (unknown [Glycine max])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MDLVILEGDMILLDVVPLLDPDLLGPGSGLGGDELLQVADRVVLVALHPDLLPETIIEDH 60
           +DLVILE D+IL+  VPLLD DL+G  + L    LLQVAD V++VALH  LLP++I++ H
Sbjct: 78  LDLVILESDVILVYGVPLLDADLVGSCARLSRHRLLQVADGVIVVALHAHLLPQSIVQHH 137

Query: 61  LDHPRPSEN 70
           LDH R + N
Sbjct: 138 LDHLRDANN 146

The following BLAST results are available for this feature:

BLAST of Lcy10g004220 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g004220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059ACL3	7.0e-14	64.62	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00925 PE=4 SV...	[more]
A0A5N6PAU4	2.0e-13	66.15	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_13416 PE=4 SV=1	[more]
A0A6M2FCY3	1.7e-12	65.08	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A7S1CR20	3.6e-10	60.32	Hypothetical protein (Fragment) OS=Bicosoecida sp. CB-2014 OX=1486930 GN=BSP0115...	[more]
C6SXJ1	8.0e-10	56.52	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Lcy10g004220 vs. NCBI nr


Match Name	E-value	Identity	Description
KCW51381.1	1.4e-13	64.62	hypothetical protein EUGRSUZ_J00925 [Eucalyptus grandis]	[more]
KAD5961943.1	4.2e-13	66.15	hypothetical protein E3N88_13416 [Mikania micrantha]	[more]
KAF9676680.1	5.1e-11	61.90	hypothetical protein SADUNF_Sadunf08G0028200 [Salix dunnii]	[more]
ACU13964.1	1.6e-09	56.52	unknown [Glycine max]	[more]
ACU18493.1	2.2e-09	56.52	unknown [Glycine max]	[more]

BLAST of Lcy10g004220 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004220.1	Lcy10g004220.1	mRNA