Lcy10g004200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zf-RVT domain-containing protein
Location	Chr10: 8919902 .. 8920147 (+)
RNA-Seq Expression	Lcy10g004200
Synteny	Lcy10g004200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGCTCCATCTATGATTGTTGGGATGGGGAAGAACAATCTTGGAACCTAGGGCTTCGTAGAAGTGTTTTTGATCATGAGGTTGCAAGTTGGGTAGCCTTGGTTGATAAGCTGAGTACCTTTAATATAAGGAGGGAGGCTGACAAAGTTGTGTGGACTGCAAAGGGGTCTGGAACTTTCTCCACCAAATCAGCATTTGAAAGCCTTGCCAAGCAATGGCCAAAAATCCACGCCCCTGGTTAA

mRNA sequence

ATGGAATGCTCCATCTATGATTGTTGGGATGGGGAAGAACAATCTTGGAACCTAGGGCTTCGTAGAAGTGTTTTTGATCATGAGGTTGCAAGTTGGGTAGCCTTGGTTGATAAGCTGAGTACCTTTAATATAAGGAGGGAGGCTGACAAAGTTGTGTGGACTGCAAAGGGGTCTGGAACTTTCTCCACCAAATCAGCATTTGAAAGCCTTGCCAAGCAATGGCCAAAAATCCACGCCCCTGGTTAA

Coding sequence (CDS)

ATGGAATGCTCCATCTATGATTGTTGGGATGGGGAAGAACAATCTTGGAACCTAGGGCTTCGTAGAAGTGTTTTTGATCATGAGGTTGCAAGTTGGGTAGCCTTGGTTGATAAGCTGAGTACCTTTAATATAAGGAGGGAGGCTGACAAAGTTGTGTGGACTGCAAAGGGGTCTGGAACTTTCTCCACCAAATCAGCATTTGAAAGCCTTGCCAAGCAATGGCCAAAAATCCACGCCCCTGGTTAA

Protein sequence

MECSIYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTFSTKSAFESLAKQWPKIHAPG

Homology

[Close]

BLAST of Lcy10g004200 vs. ExPASy TrEMBL
Match: A0A6J1DAV1 (uncharacterized protein LOC111019288 OS=Momordica charantia OX=3673 GN=LOC111019288 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 2   ECSIYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTF 61
           E  I DCW   +++W+LG RR +FD E+ +W+ +V +L  F I  E D  VW +  +G F
Sbjct: 477 EAVIADCWCNVQRTWDLGFRRGLFDREIENWMRMVQRLEAFEIGDETDVAVWPSDPNGHF 536

Query: 62  STKSAFESLAKQWPKIHA 80
           +TKSA+  L +  PK+++
Sbjct: 537 TTKSAYLKLKENPPKLNS 554

[Close]

BLAST of Lcy10g004200 vs. ExPASy TrEMBL
Match: A0A5D3BWG7 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00410 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 9   WDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTFSTKSAFE 68
           W    Q+W+LGLRR VFD E+ +++AL   L+ + + R  D +    + SG FSTKS F 
Sbjct: 55  WVDSNQAWDLGLRRRVFDREIGNYIALAQLLTGWVVNRARDSLRSKLEASGQFSTKSTFL 114

Query: 69  SLAKQWPKIHAP 81
            L K+  K++ P
Sbjct: 115 KLTKRATKVNLP 126

[Close]

BLAST of Lcy10g004200 vs. ExPASy TrEMBL
Match: A0A5D3CFH0 (Protein PIR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002420 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.6e-06
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 5   IYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTFSTK 64
           + DCW      WNLGLRR+V D+E+ +  ++++ L ++      D + WT   +G+F+ K
Sbjct: 249 VADCWCNITHLWNLGLRRNVLDNELDNVASILEILHSWAPSNGGDSLKWTRIVNGSFTKK 308

Query: 65  SAFESLAKQWPKIHAP 81
           S F +L K+ P I  P
Sbjct: 309 STFLNLTKRSPSIAVP 324

[Close]

BLAST of Lcy10g004200 vs. ExPASy TrEMBL
Match: A0A6J1D884 (uncharacterized protein LOC111017819 OS=Momordica charantia OX=3673 GN=LOC111017819 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 2   ECSIYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVW 54
           E  + DCW    ++W+LG RR +FD E+  W  +V++L  F +  E+D VVW
Sbjct: 70  EAVVADCWSNVYKTWDLGFRRGLFDRELECWTRMVERLEVFVLEEESDAVVW 121

[Close]

BLAST of Lcy10g004200 vs. ExPASy TrEMBL
Match: M1DJF6 (CCHC-type domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 9  WDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTF-NIRREADKVVWTAKGSGTFSTKSAF 68
          W G  Q WNL LRR++ D E+ + VA  D L+ F N+ RE DKVVW     G FS KSA+
Sbjct: 2  WTG--QGWNLHLRRNLNDWEMGNIVAFHDTLAQFSNLTREEDKVVWKIGSKGVFSVKSAY 61

Query: 69 ESL 71
          + L
Sbjct: 62 KDL 62

[Close]

BLAST of Lcy10g004200 vs. NCBI nr
Match: XP_022151325.1 (uncharacterized protein LOC111019288 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 2   ECSIYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTF 61
           E  I DCW   +++W+LG RR +FD E+ +W+ +V +L  F I  E D  VW +  +G F
Sbjct: 477 EAVIADCWCNVQRTWDLGFRRGLFDREIENWMRMVQRLEAFEIGDETDVAVWPSDPNGHF 536

Query: 62  STKSAFESLAKQWPKIHA 80
           +TKSA+  L +  PK+++
Sbjct: 537 TTKSAYLKLKENPPKLNS 554

[Close]

BLAST of Lcy10g004200 vs. NCBI nr
Match: KAA0059476.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK03847.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 9   WDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTFSTKSAFE 68
           W    Q+W+LGLRR VFD E+ +++AL   L+ + + R  D +    + SG FSTKS F 
Sbjct: 55  WVDSNQAWDLGLRRRVFDREIGNYIALAQLLTGWVVNRARDSLRSKLEASGQFSTKSTFL 114

Query: 69  SLAKQWPKIHAP 81
            L K+  K++ P
Sbjct: 115 KLTKRATKVNLP 126

[Close]

BLAST of Lcy10g004200 vs. NCBI nr
Match: TYK10100.1 (protein PIR [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 5   IYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTFSTK 64
           + DCW      WNLGLRR+V D+E+ +  ++++ L ++      D + WT   +G+F+ K
Sbjct: 249 VADCWCNITHLWNLGLRRNVLDNELDNVASILEILHSWAPSNGGDSLKWTRIVNGSFTKK 308

Query: 65  SAFESLAKQWPKIHAP 81
           S F +L K+ P I  P
Sbjct: 309 STFLNLTKRSPSIAVP 324

[Close]

BLAST of Lcy10g004200 vs. NCBI nr
Match: XP_022149391.1 (uncharacterized protein LOC111017819 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 2   ECSIYDCWDGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVW 54
           E  + DCW    ++W+LG RR +FD E+  W  +V++L  F +  E+D VVW
Sbjct: 70  EAVVADCWSNVYKTWDLGFRRGLFDRELECWTRMVERLEVFVLEEESDAVVW 121

[Close]

BLAST of Lcy10g004200 vs. NCBI nr
Match: MCH93873.1 (F-box family protein [Trifolium medium])

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-05
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 10 DGEEQSWNLGLRRSVFDHEVASWVALVDKLSTFNIRREADKVVWTAKGSGTFSTKSAFES 69
          DGE + WNL  RRS+F  E    + L+  L    +  E DK  W+    G+FS KSA+ES
Sbjct: 5  DGERRDWNLLWRRSLFQWEEEKVILLLASLQNVTLSHEVDKWSWSLNPEGSFSVKSAYES 64

Query: 70 LAK 73
          L+K
Sbjct: 65 LSK 67

The following BLAST results are available for this feature:

BLAST of Lcy10g004200 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g004200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAV1	1.2e-10	39.74	uncharacterized protein LOC111019288 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3BWG7	5.9e-07	40.28	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CFH0	8.6e-06	35.53	Protein PIR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002420 PE...	[more]
A0A6J1D884	1.1e-05	40.38	uncharacterized protein LOC111017819 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
M1DJF6	1.9e-05	49.21	CCHC-type domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of Lcy10g004200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151325.1	2.4e-10	39.74	uncharacterized protein LOC111019288 [Momordica charantia]	[more]
KAA0059476.1	1.2e-06	40.28	Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK03847.1 Transposon...	[more]
TYK10100.1	1.8e-05	35.53	protein PIR [Cucumis melo var. makuwa]	[more]
XP_022149391.1	2.3e-05	40.38	uncharacterized protein LOC111017819 [Momordica charantia]	[more]
MCH93873.1	8.8e-05	42.86	F-box family protein [Trifolium medium]	[more]

BLAST of Lcy10g004200 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004200.1	Lcy10g004200.1	mRNA