Lcy10g004180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr10: 8918299 .. 8918652 (+)
RNA-Seq Expression	Lcy10g004180
Synteny	Lcy10g004180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCTATAACAAGTTATACACTGATGATAAGAAAACTAGATTCACCATTGATGGTATTCCATGGGATCCGATTGAAGAGAGCAACAAAGTTTGGTTGGAAAGGAGATTCACGGAGGACGAAATTTTTGGAGCGGTTAAAAGTCTGGGCAATTGCAAGTCTCCTAGGCCGGATGGAATGACAGGGGAGTTTTATAAAAATTGTTGGAACATCTTGAAAGAAGATGTAGTAGAGGTGTTTCAAGAATTTTTTGAAAACAGCATAGTCAACAGGCGCACGAAACATACATATGTCTTATCCCCAAGAAGAAAAATGTCTCGAAAGTCAAAGATTTCAGACCTCTCTTTATAA

mRNA sequence

ATGAGCTCCTATAACAAGTTATACACTGATGATAAGAAAACTAGATTCACCATTGATGGTATTCCATGGGATCCGATTGAAGAGAGCAACAAAGTTTGGTTGGAAAGGAGATTCACGGAGGACGAAATTTTTGGAGCGGTTAAAAGTCTGGGCAATTGCAAGTCTCCTAGGCCGGATGGAATGACAGGGGAGTTTTATAAAAATTGTTGGAACATCTTGAAAGAAGATGTAGTAGAGGTGTTTCAAGAATTTTTTGAAAACAGCATAGTCAACAGGCGCACGAAACATACATATGTCTTATCCCCAAGAAGAAAAATGTCTCGAAAGTCAAAGATTTCAGACCTCTCTTTATAA

Coding sequence (CDS)

ATGAGCTCCTATAACAAGTTATACACTGATGATAAGAAAACTAGATTCACCATTGATGGTATTCCATGGGATCCGATTGAAGAGAGCAACAAAGTTTGGTTGGAAAGGAGATTCACGGAGGACGAAATTTTTGGAGCGGTTAAAAGTCTGGGCAATTGCAAGTCTCCTAGGCCGGATGGAATGACAGGGGAGTTTTATAAAAATTGTTGGAACATCTTGAAAGAAGATGTAGTAGAGGTGTTTCAAGAATTTTTTGAAAACAGCATAGTCAACAGGCGCACGAAACATACATATGTCTTATCCCCAAGAAGAAAAATGTCTCGAAAGTCAAAGATTTCAGACCTCTCTTTATAA

Protein sequence

MSSYNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTGEFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTYVLSPRRKMSRKSKISDLSL

Homology

[Close]

BLAST of Lcy10g004180 vs. ExPASy TrEMBL
Match: A0A438ESU6 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_362 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           + KLYT      + ++G+ W PI   + V LE  FTE+EIF A+  +   K+P PDG T 
Sbjct: 192 FEKLYTSPSGESWRVEGLDWSPISGESAVRLESPFTEEEIFKAIFQMDRDKAPGPDGFTI 251

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
             +++CW ++KED+V+VF EF  + I+N+ T  ++ VL P++ MSR  +ISD
Sbjct: 252 AVFQDCWEVIKEDLVKVFTEFHRSGIINQSTNASFIVLLPKKSMSR--RISD 301

[Close]

BLAST of Lcy10g004180 vs. ExPASy TrEMBL
Match: A0A438GDJ4 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_505 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           + KLYT      + ++G+ W PI   +   LE  FTE+EIF A+  +   K+P PDG T 
Sbjct: 578 FEKLYTSPSGESWRVEGLDWSPISGESAFRLESPFTEEEIFKAIFQMDMDKAPWPDGFTI 637

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
             +++CW ++KED+V+VF EF  N I+N+ T  ++ VL P++ MSR  +ISD
Sbjct: 638 AVFQDCWEVIKEDLVKVFAEFHRNGIINQSTNASFIVLLPKKNMSR--RISD 687

[Close]

BLAST of Lcy10g004180 vs. ExPASy TrEMBL
Match: A0A438C911 (Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=29760 GN=SMC3_7 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           +  LY+  +   + I+GI W PI E + +WL+R F+E+E+  AV  L   K+P PDG T 
Sbjct: 252 FGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAVFQLNREKAPGPDGFTL 311

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTYVLSPRRKMSRKSKISD 115
             Y+ CW+++KED++ VF EF    ++NR T  T++    +K S+  KISD
Sbjct: 312 AVYQECWDVIKEDLMRVFFEFHTKGVINRSTNATFIAMVPKK-SQTFKISD 361

[Close]

BLAST of Lcy10g004180 vs. ExPASy TrEMBL
Match: A5BCI7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_029474 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.5e-16
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 4    YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
            + KLYT      + ++G+ W PI   +   LE  FTE+EIF A+  +   K+P PDG T 
Sbjct: 1065 FEKLYTSPSGESWRVEGLDWSPISGESAFRLESPFTEEEIFKAIFQMDRDKAPGPDGFTI 1124

Query: 64   EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
              +++CW ++KED+V+VF EF  + I+N+ T  ++ VL P++ MSR  +ISD
Sbjct: 1125 AVFQDCWEVIKEDLVKVFTEFHRSGIINQSTNASFIVLLPKKSMSR--RISD 1174

[Close]

BLAST of Lcy10g004180 vs. ExPASy TrEMBL
Match: A0A438J9S9 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_650 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.5e-16
Identity = 44/112 (39.29%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           + KLYT+     + ++G+ W PI E + + L+  FTE+EI  A+  L   K+PRPDG T 
Sbjct: 174 FEKLYTNPTGESWGVEGLDWSPISEESALRLDSPFTEEEISKAIFQLDRDKAPRPDGFTI 233

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
             ++ CW+++KED+V VF EF  + I+N+ T  ++ VL P++ +S+  +ISD
Sbjct: 234 AVFQECWDVIKEDLVRVFAEFHRSGIINQNTNASFIVLIPKKSLSK--RISD 283

[Close]

BLAST of Lcy10g004180 vs. NCBI nr
Match: RVW50737.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-16
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           + KLYT      + ++G+ W PI   + V LE  FTE+EIF A+  +   K+P PDG T 
Sbjct: 192 FEKLYTSPSGESWRVEGLDWSPISGESAVRLESPFTEEEIFKAIFQMDRDKAPGPDGFTI 251

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
             +++CW ++KED+V+VF EF  + I+N+ T  ++ VL P++ MSR  +ISD
Sbjct: 252 AVFQDCWEVIKEDLVKVFTEFHRSGIINQSTNASFIVLLPKKSMSR--RISD 301

[Close]

BLAST of Lcy10g004180 vs. NCBI nr
Match: RVW70261.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           + KLYT      + ++G+ W PI   +   LE  FTE+EIF A+  +   K+P PDG T 
Sbjct: 578 FEKLYTSPSGESWRVEGLDWSPISGESAFRLESPFTEEEIFKAIFQMDMDKAPWPDGFTI 637

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
             +++CW ++KED+V+VF EF  N I+N+ T  ++ VL P++ MSR  +ISD
Sbjct: 638 AVFQDCWEVIKEDLVKVFAEFHRNGIINQSTNASFIVLLPKKNMSR--RISD 687

[Close]

BLAST of Lcy10g004180 vs. NCBI nr
Match: RVW19678.1 (Structural maintenance of chromosomes protein 3, partial [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           +  LY+  +   + I+GI W PI E + +WL+R F+E+E+  AV  L   K+P PDG T 
Sbjct: 252 FGNLYSKPEGDSWKIEGIDWAPISEESAIWLDRPFSEEEVRMAVFQLNREKAPGPDGFTL 311

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTYVLSPRRKMSRKSKISD 115
             Y+ CW+++KED++ VF EF    ++NR T  T++    +K S+  KISD
Sbjct: 312 AVYQECWDVIKEDLMRVFFEFHTKGVINRSTNATFIAMVPKK-SQTFKISD 361

[Close]

BLAST of Lcy10g004180 vs. NCBI nr
Match: XP_026410891.1 (uncharacterized protein LOC113306132 [Papaver somniferum])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           Y KLYT+D    FT+D + +  I+E  ++ +++ FTE+E++G +K  G  KSPRPDG + 
Sbjct: 62  YQKLYTEDNNVAFTLDKLEFPRIDEGEQMEMKKEFTEEEVYGVIKKSGANKSPRPDGFSM 121

Query: 64  EFYKNCWNILKEDVVEVFQEFF 86
           EFYK CW+I+KED ++V  EF+
Sbjct: 122 EFYKCCWSIIKEDFMKVMGEFY 143

[Close]

BLAST of Lcy10g004180 vs. NCBI nr
Match: CAN73385.1 (hypothetical protein VITISV_006444 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 9.3e-16
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 4   YNKLYTDDKKTRFTIDGIPWDPIEESNKVWLERRFTEDEIFGAVKSLGNCKSPRPDGMTG 63
           + KLYT      + ++G+ W PI   +   LE  FTE+EIF A+  +   K+P PDG T 
Sbjct: 198 FKKLYTSPSGEPWRVEGLNWSPISSESAFRLESPFTEEEIFKAIFQMDGDKAPGPDGFTI 257

Query: 64  EFYKNCWNILKEDVVEVFQEFFENSIVNRRTKHTY-VLSPRRKMSRKSKISD 115
             +++CW ++KED+V+VF EF  + I+N+ T  ++ VL P++ MSR  +ISD
Sbjct: 258 AVFQDCWEVIKEDLVKVFAEFHRSGIINQSTNASFIVLLPKKSMSR--RISD 307

The following BLAST results are available for this feature:

BLAST of Lcy10g004180 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g004180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438ESU6	1.2e-16	41.07	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438GDJ4	2.7e-16	41.07	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438C911	3.5e-16	39.64	Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=...	[more]
A5BCI7	4.5e-16	40.18	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438J9S9	4.5e-16	39.29	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

BLAST of Lcy10g004180 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW50737.1	2.5e-16	41.07	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW70261.1	5.5e-16	41.07	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW19678.1	7.2e-16	39.64	Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]	[more]
XP_026410891.1	7.2e-16	46.34	uncharacterized protein LOC113306132 [Papaver somniferum]	[more]
CAN73385.1	9.3e-16	40.18	hypothetical protein VITISV_006444 [Vitis vinifera]	[more]

BLAST of Lcy10g004180 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46890:SF1	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN	coord: 26..112
None	No IPR available	PANTHER	PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	coord: 26..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004180.1	Lcy10g004180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0110165	cellular anatomical entity