Lcy10g004170 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004170
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr10: 8917923 .. 8918288 (+)
RNA-Seq Expression	Lcy10g004170
Synteny	Lcy10g004170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGTTAAAGGGGTTAAAGGGGTGCATTCGTAGATGGAACAATGAGGTCTTTGACAATATGATTGATAAAAAGATTGAATGTTTGAACCAAATTGAGAGGATCGACTTAATAGAGGAGCAGCAGGGTAGTCTTAATTCCCACCTTAAAGAGGAAAGAGTGAAAATCAAATCTAATCTTTTAGACATCACGGTGAAAGAGCAGAAGATGTTGCTGCAAAAATGTAAGCTGAAATGGCTAGAGGAGGGGGACGAGAACACAACCTTTTTCCACAGATGGGTCTCAAATATGAAAAGTAAAGCGTATCTCGCTTTACTCAAAAAAAGAAGATGGCAGCCTTATTTCTTTGGAGGAAGAGATTGA

mRNA sequence

ATGGAGAAGTTAAAGGGGTTAAAGGGGTGCATTCGTAGATGGAACAATGAGGTCTTTGACAATATGATTGATAAAAAGATTGAATGTTTGAACCAAATTGAGAGGATCGACTTAATAGAGGAGCAGCAGGGTAGTCTTAATTCCCACCTTAAAGAGGAAAGAGTGAAAATCAAATCTAATCTTTTAGACATCACGGTGAAAGAGCAGAAGATGTTGCTGCAAAAATGTAAGCTGAAATGGCTAGAGGAGGGGGACGAGAACACAACCTTTTTCCACAGATGGGTCTCAAATATGAAAAGTAAAGCGTATCTCGCTTTACTCAAAAAAAGAAGATGGCAGCCTTATTTCTTTGGAGGAAGAGATTGA

Coding sequence (CDS)

ATGGAGAAGTTAAAGGGGTTAAAGGGGTGCATTCGTAGATGGAACAATGAGGTCTTTGACAATATGATTGATAAAAAGATTGAATGTTTGAACCAAATTGAGAGGATCGACTTAATAGAGGAGCAGCAGGGTAGTCTTAATTCCCACCTTAAAGAGGAAAGAGTGAAAATCAAATCTAATCTTTTAGACATCACGGTGAAAGAGCAGAAGATGTTGCTGCAAAAATGTAAGCTGAAATGGCTAGAGGAGGGGGACGAGAACACAACCTTTTTCCACAGATGGGTCTCAAATATGAAAAGTAAAGCGTATCTCGCTTTACTCAAAAAAAGAAGATGGCAGCCTTATTTCTTTGGAGGAAGAGATTGA

Protein sequence

MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSNLLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRRWQPYFFGGRD

Homology

[Close]

BLAST of Lcy10g004170 vs. ExPASy TrEMBL
Match: A0A5D3BW32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00830 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M+KL+ L   +R WN +VF ++  KK E + +I  ID + E +G L+S LKEERV  K +
Sbjct: 409 MDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDAL-ELEGPLDSALKEERVSSKGD 468

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALL 108
           L ++  KE     QK K+KW +EGD N +FFHR  ++ ++K +L LL
Sbjct: 469 LAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNHLGLL 514

[Close]

BLAST of Lcy10g004170 vs. ExPASy TrEMBL
Match: A0A438K4Y9 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_240 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 593 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 652

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
           L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 653 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 702

[Close]

BLAST of Lcy10g004170 vs. ExPASy TrEMBL
Match: A5B978 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_037520 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1    MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
            M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 1012 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 1071

Query: 61   LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
            L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 1072 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 1121

[Close]

BLAST of Lcy10g004170 vs. ExPASy TrEMBL
Match: A0A438ETN1 (SWI/SNF complex subunit SWI3C OS=Vitis vinifera OX=29760 GN=SWI3C_4 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 390 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 449

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
           L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 450 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 499

[Close]

BLAST of Lcy10g004170 vs. ExPASy TrEMBL
Match: A5AFR7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002943 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 125 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 184

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
           L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 185 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 234

[Close]

BLAST of Lcy10g004170 vs. NCBI nr
Match: TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M+KL+ L   +R WN +VF ++  KK E + +I  ID + E +G L+S LKEERV  K +
Sbjct: 409 MDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDAL-ELEGPLDSALKEERVSSKGD 468

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALL 108
           L ++  KE     QK K+KW +EGD N +FFHR  ++ ++K +L LL
Sbjct: 469 LAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNHLGLL 514

[Close]

BLAST of Lcy10g004170 vs. NCBI nr
Match: RVW51134.1 (SWI/SNF complex subunit SWI3C [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 390 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 449

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
           L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 450 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 499

[Close]

BLAST of Lcy10g004170 vs. NCBI nr
Match: CAN75609.1 (hypothetical protein VITISV_002943 [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 125 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 184

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
           L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 185 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 234

[Close]

BLAST of Lcy10g004170 vs. NCBI nr
Match: CAN74312.1 (hypothetical protein VITISV_037520 [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1    MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
            M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 1012 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 1071

Query: 61   LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
            L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 1072 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 1121

[Close]

BLAST of Lcy10g004170 vs. NCBI nr
Match: RVX16267.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MEKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSN 60
           M KLK +K  ++ WN  VF ++ ++K   L  + RID I EQ+G+LN  L  ER+  +  
Sbjct: 593 MRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRI-EQEGNLNLELVSERILRRKE 652

Query: 61  LLDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLKKRR 112
           L D+ +KE+    QK ++KW++EGD N+ FFHR  +  +S+ Y+  L   R
Sbjct: 653 LEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKYIKSLISER 702

[Close]

BLAST of Lcy10g004170 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 31/107 (28.97%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 2   EKLKGLKGCIRRWNNEVFDNMIDKKIECLNQIERIDLIEEQQGSLNSHLKEERVKIKSNL 61
           E LK  K C +  N + F N+  K  E L+ +E I        S +    E   + K N 
Sbjct: 367 EHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNF 426

Query: 62  LDITVKEQKMLLQKCKLKWLEEGDENTTFFHRWVSNMKSKAYLALLK 109
               +  +    QK ++KWL++GD NT FFH+ +   ++K  +  L+
Sbjct: 427 FAAAL--ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLR 471

The following BLAST results are available for this feature:

BLAST of Lcy10g004170 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g004170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW32	6.3e-13	42.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438K4Y9	1.1e-12	38.74	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_240 PE=4 ...	[more]
A5B978	1.1e-12	38.74	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438ETN1	1.1e-12	38.74	SWI/SNF complex subunit SWI3C OS=Vitis vinifera OX=29760 GN=SWI3C_4 PE=4 SV=1	[more]
A5AFR7	1.1e-12	38.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002943 PE=3 SV=1	[more]

BLAST of Lcy10g004170 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03178.1	1.3e-12	42.99	hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa]	[more]
RVW51134.1	2.2e-12	38.74	SWI/SNF complex subunit SWI3C [Vitis vinifera]	[more]
CAN75609.1	2.2e-12	38.74	hypothetical protein VITISV_002943 [Vitis vinifera]	[more]
CAN74312.1	2.2e-12	38.74	hypothetical protein VITISV_037520 [Vitis vinifera]	[more]
RVX16267.1	2.2e-12	38.74	putative mitochondrial protein [Vitis vinifera]	[more]

BLAST of Lcy10g004170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	2.2e-05	28.97	DNAse I-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004170.1	Lcy10g004170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0005488	binding