Lcy10g004160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr10: 8917514 .. 8917876 (+)
RNA-Seq Expression	Lcy10g004160
Synteny	Lcy10g004160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAAGGCTTCATGTGACCAGGGTGGATAAAAGCATGAAGAAATTCAATAGTTTTATCTCTTCTGATGGGCCAATAGACCCCATGGCAAATGGCAACTTTTCTTGGTCGAGAATGGGGGAGAGACCCACAACTTCTCGCATAGACGGGTTTCTCCTATCAAAGCAGTGGGTAACCTTCAAAGATTACAAGCTTGATAGACTGCAAAGACCCACTTCTGATCATTTCTTGTTTGTGCTCTACATGGGAGCTTTTAAGTGGGGACCTATGCCTTTCATATTCGAAAATATTTGGCTAGAGGATCCTAATTTCAAGGACAATGTAGAAAGATGGTGGAAGGAGCAGACCCCGAGAGGCTAG

mRNA sequence

ATGGAGGAAAGGCTTCATGTGACCAGGGTGGATAAAAGCATGAAGAAATTCAATAGTTTTATCTCTTCTGATGGGCCAATAGACCCCATGGCAAATGGCAACTTTTCTTGGTCGAGAATGGGGGAGAGACCCACAACTTCTCGCATAGACGGGTTTCTCCTATCAAAGCAGTGGGTAACCTTCAAAGATTACAAGCTTGATAGACTGCAAAGACCCACTTCTGATCATTTCTTGTTTGTGCTCTACATGGGAGCTTTTAAGTGGGGACCTATGCCTTTCATATTCGAAAATATTTGGCTAGAGGATCCTAATTTCAAGGACAATGTAGAAAGATGGTGGAAGGAGCAGACCCCGAGAGGCTAG

Coding sequence (CDS)

ATGGAGGAAAGGCTTCATGTGACCAGGGTGGATAAAAGCATGAAGAAATTCAATAGTTTTATCTCTTCTGATGGGCCAATAGACCCCATGGCAAATGGCAACTTTTCTTGGTCGAGAATGGGGGAGAGACCCACAACTTCTCGCATAGACGGGTTTCTCCTATCAAAGCAGTGGGTAACCTTCAAAGATTACAAGCTTGATAGACTGCAAAGACCCACTTCTGATCATTTCTTGTTTGTGCTCTACATGGGAGCTTTTAAGTGGGGACCTATGCCTTTCATATTCGAAAATATTTGGCTAGAGGATCCTAATTTCAAGGACAATGTAGAAAGATGGTGGAAGGAGCAGACCCCGAGAGGCTAG

Protein sequence

MEERLHVTRVDKSMKKFNSFISSDGPIDPMANGNFSWSRMGERPTTSRIDGFLLSKQWVTFKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKEQTPRG

Homology

[Close]

BLAST of Lcy10g004160 vs. ExPASy TrEMBL
Match: A0A438DGN7 (Endo/exonuclease/phosphatase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_079345 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQWVTF 62
           E+L  +R+  SMK F+ FI     ID P+ + +F+WS M E P   R+D FL S +W  F
Sbjct: 154 EKLGGSRLTPSMKDFDDFIRDCELIDLPLRSASFTWSNMQENPVCKRLDRFLYSNEWEQF 213

Query: 63  KDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
                  L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 214 PQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 267

[Close]

BLAST of Lcy10g004160 vs. ExPASy TrEMBL
Match: A5CAA2 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030956 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3    ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
            E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 978  EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 1037

Query: 63   FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
            F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 1038 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 1092

[Close]

BLAST of Lcy10g004160 vs. ExPASy TrEMBL
Match: A0A438JX47 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_26 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
           E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 475 EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 534

Query: 63  FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
           F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 535 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 589

[Close]

BLAST of Lcy10g004160 vs. ExPASy TrEMBL
Match: A0A438GDE7 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_4 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3    ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
            E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 960  EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 1019

Query: 63   FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
            F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 1020 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 1074

[Close]

BLAST of Lcy10g004160 vs. ExPASy TrEMBL
Match: A0A438ESU6 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_362 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
           E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 50  EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 109

Query: 63  FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
           F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 110 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 164

[Close]

BLAST of Lcy10g004160 vs. NCBI nr
Match: RVW34589.1 (hypothetical protein CK203_079345 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQWVTF 62
           E+L  +R+  SMK F+ FI     ID P+ + +F+WS M E P   R+D FL S +W  F
Sbjct: 154 EKLGGSRLTPSMKDFDDFIRDCELIDLPLRSASFTWSNMQENPVCKRLDRFLYSNEWEQF 213

Query: 63  KDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
                  L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 214 PQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 267

[Close]

BLAST of Lcy10g004160 vs. NCBI nr
Match: RVX17353.1 (hypothetical protein CK203_003781 [Vitis vinifera])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
           E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 184 EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 243

Query: 63  FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
           F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 244 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 298

[Close]

BLAST of Lcy10g004160 vs. NCBI nr
Match: RVX13544.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
           E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 475 EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 534

Query: 63  FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
           F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 535 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 589

[Close]

BLAST of Lcy10g004160 vs. NCBI nr
Match: RVW70235.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3    ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
            E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 960  EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 1019

Query: 63   FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
            F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 1020 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 1074

[Close]

BLAST of Lcy10g004160 vs. NCBI nr
Match: RVW50737.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 3   ERLHVTRVDKSMKKFNSFISSDGPID-PMANGNFSWSRMGERPTTSRIDGFLLSKQW-VT 62
           E+L  +R+  SMK F+ FIS    ID P+ + +F+WS M   P   R+D FL S +W  T
Sbjct: 50  EKLGGSRLTPSMKDFDDFISDCELIDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQT 109

Query: 63  FKDYKLDRLQRPTSDHFLFVLYMGAFKWGPMPFIFENIWLEDPNFKDNVERWWKE 116
           F       L R TSDH+  VL    FKWGP PF FEN+WL+ P+FK+N  RWW+E
Sbjct: 110 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWWRE 164

The following BLAST results are available for this feature:

BLAST of Lcy10g004160 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g004160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438DGN7	1.1e-20	46.49	Endo/exonuclease/phosphatase domain-containing protein OS=Vitis vinifera OX=2976...	[more]
A5CAA2	9.0e-20	46.96	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438JX47	9.0e-20	46.96	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_...	[more]
A0A438GDE7	9.0e-20	46.96	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_...	[more]
A0A438ESU6	9.0e-20	46.96	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

BLAST of Lcy10g004160 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW34589.1	2.2e-20	46.49	hypothetical protein CK203_079345 [Vitis vinifera]	[more]
RVX17353.1	1.9e-19	46.96	hypothetical protein CK203_003781 [Vitis vinifera]	[more]
RVX13544.1	1.9e-19	46.96	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW70235.1	1.9e-19	46.96	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW50737.1	1.9e-19	46.96	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Lcy10g004160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 2..83 e-value: 9.6E-6 score: 27.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 9..80
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 2..110
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 2..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004160.1	Lcy10g004160.1	mRNA