Lcy10g004150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr10: 8916999 .. 8917477 (+)
RNA-Seq Expression	Lcy10g004150
Synteny	Lcy10g004150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACCCAAGGAGAATACTCTGCTAACTCAGTAGATGTAGAGATGATTAGTTCTAGGAAAGATGAGGTGTCCCTATGAAATTTATTTCCTGGAATGTTAGAGGTCTTAGGACCTACCCAAAAAGGGCCCTCGTTAAGGATCTTCTTAATGTTGCTAAGCCTGACTTGGTTATTTTGCAGGAGACTAGGTTGGATGTAATTGACAGGAAGACTATCAAGTCTATTTGGAGCTCCAGAAACGTTAATTGGGTAGAGCTGGAGGCTGCGAGGACTTCTGGTGGCATTCTCATCATGTGGAAAGAGGATATGATTGAGGTTAGAGATTCTGTCATTGGGGTCTTCTCCATCTTTATCCTTCGCAGATTCTGTGGGTGGTCTGAAGGGTGGATCACAGGAGTGTATGGCCAGTGCAATCTTCGAGAGAGGAAAAATTTTTGGCAGGAATTAAATGACTTGGCAAGCTTATGCAGTGAGTAA

mRNA sequence

ATGGAGACCCAAGGAGAATACTCTGCTAACTCAGTAGATGTAGAGATGATTAGTTCTAGGAAAGATGAGGAGACTAGGTTGGATGTAATTGACAGGAAGACTATCAAGTCTATTTGGAGCTCCAGAAACGTTAATTGGGTAGAGCTGGAGGCTGCGAGGACTTCTGGTGGCATTCTCATCATGTGGAAAGAGGATATGATTGAGGTTAGAGATTCTGTCATTGGGGTCTTCTCCATCTTTATCCTTCGCAGATTCTGTGGGTGGTCTGAAGGGTGGATCACAGGAGTGTATGGCCAGTGCAATCTTCGAGAGAGGAAAAATTTTTGGCAGGAATTAAATGACTTGGCAAGCTTATGCAGTGAGTAA

Coding sequence (CDS)

ATGGAGACCCAAGGAGAATACTCTGCTAACTCAGTAGATGTAGAGATGATTAGTTCTAGGAAAGATGAGGAGACTAGGTTGGATGTAATTGACAGGAAGACTATCAAGTCTATTTGGAGCTCCAGAAACGTTAATTGGGTAGAGCTGGAGGCTGCGAGGACTTCTGGTGGCATTCTCATCATGTGGAAAGAGGATATGATTGAGGTTAGAGATTCTGTCATTGGGGTCTTCTCCATCTTTATCCTTCGCAGATTCTGTGGGTGGTCTGAAGGGTGGATCACAGGAGTGTATGGCCAGTGCAATCTTCGAGAGAGGAAAAATTTTTGGCAGGAATTAAATGACTTGGCAAGCTTATGCAGTGAGTAA

Protein sequence

METQGEYSANSVDVEMISSRKDEETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFILRRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE

Homology

[Close]

BLAST of Lcy10g004150 vs. ExPASy TrEMBL
Match: M5XUF8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 3   TQGEYSANSVDVEMISSRKDEETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMW 62
           T+ E   NSV   ++   K EET  +V DRK    +W SR   WV   +   SGGI++MW
Sbjct: 301 TRVEPEVNSVQSTVL---KREETMKEVFDRKLAAGVWGSRFKEWVYAPSRGRSGGIVVMW 360

Query: 63  KEDMIEVRDSVIGVFSIFILRRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLC 120
               I + D  IG FS+ I        + W++G+YG C+ R+R+ FW+EL  L  LC
Sbjct: 361 NSQTISISDFEIGEFSVSIRILDASGGDWWLSGIYGLCHPRDRRRFWEELAGLFGLC 414

[Close]

BLAST of Lcy10g004150 vs. ExPASy TrEMBL
Match: A0A438IJP8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_026052 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 23  EETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFIL 82
           +ET+ +V DR+ + S+WS RN  WV L A   SGGILI+W    +   D VIG FS+ + 
Sbjct: 81  QETKREVCDRRFVGSVWSVRNKEWVALPACGASGGILIIWDSKKMSSEDVVIGSFSVSVK 140

Query: 83  RRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCS 121
               G    W++ VYG  N   RK+FW EL+DL SL S
Sbjct: 141 FLLDGCGPLWLSAVYGPNNPLTRKDFWVELSDLFSLTS 178

[Close]

BLAST of Lcy10g004150 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.4e-14
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 24  ETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFILR 83
           ET+ +++DR+ +  +W SR   WV   +   SGGI ++W    + V DS++G FS+ I  
Sbjct: 358 ETKKEIVDRQLVAGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGEFSVSIRI 417

Query: 84  RFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE 122
                ++ W++G+YG C  RER +FW+EL DL   C +
Sbjct: 418 EENIGTDWWLSGIYGPCRQRERNSFWEELADLYGYCGD 455

[Close]

BLAST of Lcy10g004150 vs. ExPASy TrEMBL
Match: A0A6P5T1U8 (uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 23  EETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFIL 82
           +ET+   IDR+ + S+W SR  +WV + +   SGGI+I+W    + V DS I  FS+ I 
Sbjct: 35  QETKKQEIDRRLVASVWCSRFRDWVFVPSTGRSGGIVIIWNTQFVSVIDSEIAEFSVSIK 94

Query: 83  RRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE 122
            R    ++ W++G+YG C  R+R  FW EL  L  LC E
Sbjct: 95  IRGTSGADWWLSGIYGPCRQRDRGRFWVELAALYGLCGE 133

[Close]

BLAST of Lcy10g004150 vs. ExPASy TrEMBL
Match: A0A803QQM3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 23   EETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFIL 82
            +E +   +DR+ I SIW SR   W+ L A   SGG L++W    I V DS++G FSI +L
Sbjct: 958  QEVKRATVDRRFIGSIWRSRFKAWILLPALGRSGGTLLIWDTRTISVLDSLVGEFSISVL 1017

Query: 83   RRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE 122
                G    W +GVYG C+ + R  FW EL  L+S+C E
Sbjct: 1018 INAEGKEPWWFSGVYGPCSYKLRPEFWDELAGLSSICGE 1056

[Close]

BLAST of Lcy10g004150 vs. NCBI nr
Match: XP_031739979.1 (uncharacterized protein LOC116403332 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.5e-18
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 23  EETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFIL 82
           +++++  ++R  +KS+WSS  V W  LEA  +SGGILI+WKED I V DS+ G FSI I 
Sbjct: 28  QKSKVSTVNRHLVKSVWSSWFVGWATLEAYGSSGGILILWKEDSITVVDSIQGQFSISIH 87

Query: 83  RRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE 122
            +F     GWITGVYG  + R R  FW EL+ L  LC+E
Sbjct: 88  WKFNAGFSGWITGVYGPSSYRLRDQFWWELSSLYGLCNE 126

[Close]

BLAST of Lcy10g004150 vs. NCBI nr
Match: RVW96835.1 (hypothetical protein CK203_026052 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 23  EETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFIL 82
           +ET+ +V DR+ + S+WS RN  WV L A   SGGILI+W    +   D VIG FS+ + 
Sbjct: 81  QETKREVCDRRFVGSVWSVRNKEWVALPACGASGGILIIWDSKKMSSEDVVIGSFSVSVK 140

Query: 83  RRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCS 121
               G    W++ VYG  N   RK+FW EL+DL SL S
Sbjct: 141 FLLDGCGPLWLSAVYGPNNPLTRKDFWVELSDLFSLTS 178

[Close]

BLAST of Lcy10g004150 vs. NCBI nr
Match: XP_021820446.1 (uncharacterized protein LOC110762145 [Prunus avium])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 23  EETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFIL 82
           +ET+   IDR+ + S+W SR  +WV + +   SGGI+I+W    + V DS I  FS+ I 
Sbjct: 35  QETKKQEIDRRLVASVWCSRFRDWVFVPSTGRSGGIVIIWNTQFVSVIDSEIAEFSVSIK 94

Query: 83  RRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE 122
            R    ++ W++G+YG C  R+R  FW EL  L  LC E
Sbjct: 95  IRGTSGADWWLSGIYGPCRQRDRGRFWVELAALYGLCGE 133

[Close]

BLAST of Lcy10g004150 vs. NCBI nr
Match: RVW61143.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 8   SANSVDVEMISSRKDEETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMI 67
           S+   DV MI   K EE      DR+ + S+WS+RN +W  L A+  SGGILI+W    +
Sbjct: 162 SSEKPDVVMIQETKKEE-----CDRRLVGSVWSARNKDWAALPASGASGGILIIWDSKKL 221

Query: 68  EVRDSVIGVFSIFILRRFCGWSEGWITGVYGQCNLRERKNFWQELNDLASL 119
              + V+G FS+ I     G    W++ VYG  N   RK+FW EL+D+A L
Sbjct: 222 RREEVVLGSFSVSIKFAMDGCESLWLSAVYGPNNSALRKDFWVELSDIAGL 267

[Close]

BLAST of Lcy10g004150 vs. NCBI nr
Match: BBH07150.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-13
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 24  ETRLDVIDRKTIKSIWSSRNVNWVELEAARTSGGILIMWKEDMIEVRDSVIGVFSIFILR 83
           ET+ +++DR+ +  +W SR   WV   +   SGGI ++W    + V DS++G FS+ I  
Sbjct: 24  ETKKEIVDRQLVTGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGEFSVSIRI 83

Query: 84  RFCGWSEGWITGVYGQCNLRERKNFWQELNDLASLCSE 122
                ++ W++G+YG C  RER +FW+EL DL   C +
Sbjct: 84  VENIGTDWWLSGIYGPCRQRERISFWEELADLYGYCGD 121

The following BLAST results are available for this feature:

BLAST of Lcy10g004150 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g004150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5XUF8	2.0e-14	38.46	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A438IJP8	2.6e-14	44.90	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_026052 PE=4 SV=1	[more]
M5WJ76	4.4e-14	36.73	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A6P5T1U8	5.7e-14	40.40	uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE...	[more]
A0A803QQM3	5.7e-14	42.42	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy10g004150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739979.1	3.5e-18	49.49	uncharacterized protein LOC116403332 [Cucumis sativus]	[more]
RVW96835.1	5.3e-14	44.90	hypothetical protein CK203_026052 [Vitis vinifera]	[more]
XP_021820446.1	1.2e-13	40.40	uncharacterized protein LOC110762145 [Prunus avium]	[more]
RVW61143.1	3.4e-13	40.54	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
BBH07150.1	4.5e-13	36.73	TatD related DNase [Prunus dulcis]	[more]

BLAST of Lcy10g004150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 24..118
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 24..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004150.1	Lcy10g004150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity