Lcy10g004120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g004120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	Chr10: 8878839 .. 8879386 (-)
RNA-Seq Expression	Lcy10g004120
Synteny	Lcy10g004120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGGAATCTGGTGCAAGTCCAAGTGCATCAAATTTGGATCGGTACAAGAGAATAAGAGAAGAAAAAAGTTCTTTAGAATTGAAGGATGATGTGGATCGATATTTATCTGACGATTGTGTGGAACTTAATGATAAATTTGATGTTTTGGCTTGGTGGAAACTGAATGAGTCTAAATATCAAGTTTTATCGAAAATCGCTCGAGATGTTTTGACAGTTCCAGTGTCTATCGTGGCTATCGTGGCTTCTGAATCAACATTTAATACTGGAGGGAGGATTCTTGATTCTTTTAGAAGTTCTTTGACACCTACAATAGTGGAGGCTTTGATATGTACACGAAATTGGATTCGTGGTCAATCAATATTATTAGATCTTCCTCCACAGCTTGAAGAATTGGAGACTTGTGCTAAAATTGAGAAAGGTAACAACTTATTTAAAGTTTGTGTGTTGAGATCTATTGTATACTTTATATAACACTAAACATTTGAACTTTTTCTCTTGTTTTTACAGGTGTTGTAGGGTCCTCCACCATTGTGCATACATAG

mRNA sequence

ATGAGTATGGAATCTGGTGCAAGTCCAAGTGCATCAAATTTGGATCGGTACAAGAGAATAAGAGAAGAAAAAAGTTCTTTAGAATTGAAGGATGATGTGGATCGATATTTATCTGACGATTGTGTGGAACTTAATGATAAATTTGATGTTTTGGCTTGGTGGAAACTGAATGAGTCTAAATATCAAGTTTTATCGAAAATCGCTCGAGATGTTTTGACAGTTCCAGTGTCTATCGTGGCTATCGTGGCTTCTGAATCAACATTTAATACTGGAGGGAGGATTCTTGATTCTTTTAGAAGTTCTTTGACACCTACAATAGTGGAGGCTTTGATATGTACACGAAATTGGATTCGTGGTCAATCAATATTATTAGATCTTCCTCCACAGCTTGAAGAATTGGAGACTTGTGCTAAAATTGAGAAAGGTGTTGTAGGGTCCTCCACCATTGTGCATACATAG

Coding sequence (CDS)

ATGAGTATGGAATCTGGTGCAAGTCCAAGTGCATCAAATTTGGATCGGTACAAGAGAATAAGAGAAGAAAAAAGTTCTTTAGAATTGAAGGATGATGTGGATCGATATTTATCTGACGATTGTGTGGAACTTAATGATAAATTTGATGTTTTGGCTTGGTGGAAACTGAATGAGTCTAAATATCAAGTTTTATCGAAAATCGCTCGAGATGTTTTGACAGTTCCAGTGTCTATCGTGGCTATCGTGGCTTCTGAATCAACATTTAATACTGGAGGGAGGATTCTTGATTCTTTTAGAAGTTCTTTGACACCTACAATAGTGGAGGCTTTGATATGTACACGAAATTGGATTCGTGGTCAATCAATATTATTAGATCTTCCTCCACAGCTTGAAGAATTGGAGACTTGTGCTAAAATTGAGAAAGGTGTTGTAGGGTCCTCCACCATTGTGCATACATAG

Protein sequence

MSMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKYQVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQSILLDLPPQLEELETCAKIEKGVVGSSTIVHT

Homology

[Close]

BLAST of Lcy10g004120 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-17
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 20  IREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKYQVLSKIARDVLTVPVSIV 79
           + E  +S   K ++++YL +       +FD+L WWKLN  KY  LSK+ARD+L +P+S+V
Sbjct: 605 LSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMV 664

Query: 80  AIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIR 119
           +   S  +  TG R+LD +RSS  P IVEAL+C ++W++
Sbjct: 665 SSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWLQ 703

[Close]

BLAST of Lcy10g004120 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-17
Identity = 41/99 (41.41%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 20  IREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKYQVLSKIARDVLTVPVSIV 79
           + E  +S   K ++++YL +       +FD+L WWKLN  K+  LS++ARD+L +P+S+V
Sbjct: 605 LSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMV 664

Query: 80  AIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIR 119
           +   S  +  TG R+LD +RSSL P IVEAL+C ++W++
Sbjct: 665 SSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQ 703

[Close]

BLAST of Lcy10g004120 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 6.7e-17
Identity = 43/97 (44.33%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 28  ELKD-------DVDRYLSDDCVELNDKFDVLAWWKLNESKYQVLSKIARDVLTVPVSIVA 87
           ELKD       ++D+Y+S+  ++ + +FD+L+WW+   ++Y +L++IARDVL + VS   
Sbjct: 658 ELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVS--- 717

Query: 88  IVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWI 118
            VASES F+ GGR++D +R+ L   IVEALICT++W+
Sbjct: 718 TVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751

[Close]

BLAST of Lcy10g004120 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.7e-17
Identity = 43/97 (44.33%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 28  ELKD-------DVDRYLSDDCVELNDKFDVLAWWKLNESKYQVLSKIARDVLTVPVSIVA 87
           ELKD       ++D+Y+S+  ++ + +FD+L+WW+   ++Y +L++IARDVL + VS   
Sbjct: 627 ELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVS--- 686

Query: 88  IVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWI 118
            VASES F+ GGR++D +R+ L   IVEALICT++W+
Sbjct: 687 TVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

[Close]

BLAST of Lcy10g004120 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-16
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 4   ESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKYQV 63
           E G +   S+ D Y     E +   LK ++D+YL +  +    +FDVL WWK N+ KY  
Sbjct: 567 EGGKADGLSDFDTYIM---ETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPT 626

Query: 64  LSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWI 118
           LSK+ARD+L++PVS  A    +  F+   R +D +++SL P  VEALIC R W+
Sbjct: 627 LSKMARDILSIPVSAAAF---DYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

[Close]

BLAST of Lcy10g004120 vs. ExPASy TrEMBL
Match: A0A5A7U8W5 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G00790 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 746 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 805

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 806 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 865

Query: 122 ILLDLPPQLEELETCAKIEKGVV 145
            LLDL P+LEE+E C KIE G +
Sbjct: 866 TLLDLCPELEEMEICEKIENGQI 883

[Close]

BLAST of Lcy10g004120 vs. ExPASy TrEMBL
Match: A0A5D3C1C9 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002280 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 106 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 165

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 166 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 225

Query: 122 ILLDLPPQLEELETCAKIEKGVV 145
            LLDL P+LEE+E C KIE G +
Sbjct: 226 TLLDLCPELEEMEICEKIENGQI 243

[Close]

BLAST of Lcy10g004120 vs. ExPASy TrEMBL
Match: A0A5D3C9B8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001200 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 95/146 (65.07%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 578 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 637

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 638 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 697

Query: 122 ILLDLPPQLEELETCAKIEKGVVGSS 148
            LLDL P+LEE+E C KIE   + SS
Sbjct: 698 TLLDLCPELEEMEICEKIENDNIKSS 718

[Close]

BLAST of Lcy10g004120 vs. ExPASy TrEMBL
Match: A0A5A7VIJ7 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00070 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 93/139 (66.91%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 578 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 637

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 638 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 697

Query: 122 ILLDLPPQLEELETCAKIE 141
            LLDL P+LEE+E C KIE
Sbjct: 698 TLLDLCPELEEMEICEKIE 711

[Close]

BLAST of Lcy10g004120 vs. ExPASy TrEMBL
Match: A0A5D3DTE1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002370 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 93/139 (66.91%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 578 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 637

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 638 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 697

Query: 122 ILLDLPPQLEELETCAKIE 141
            LLDL P+LEE+E C KIE
Sbjct: 698 TLLDLCPELEEMEICEKIE 711

[Close]

BLAST of Lcy10g004120 vs. NCBI nr
Match: KAA0050616.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-42
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 746 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 805

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 806 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 865

Query: 122 ILLDLPPQLEELETCAKIEKGVV 145
            LLDL P+LEE+E C KIE G +
Sbjct: 866 TLLDLCPELEEMEICEKIENGQI 883

[Close]

BLAST of Lcy10g004120 vs. NCBI nr
Match: TYK05741.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-42
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 106 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 165

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 166 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 225

Query: 122 ILLDLPPQLEELETCAKIEKGVV 145
            LLDL P+LEE+E C KIE G +
Sbjct: 226 TLLDLCPELEEMEICEKIENGQI 243

[Close]

BLAST of Lcy10g004120 vs. NCBI nr
Match: KAA0065439.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK07824.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 4.4e-42
Identity = 95/146 (65.07%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 578 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 637

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 638 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 697

Query: 122 ILLDLPPQLEELETCAKIEKGVVGSS 148
            LLDL P+LEE+E C KIE   + SS
Sbjct: 698 TLLDLCPELEEMEICEKIENDNIKSS 718

[Close]

BLAST of Lcy10g004120 vs. NCBI nr
Match: KAA0067548.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 93/139 (66.91%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 578 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 637

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 638 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 697

Query: 122 ILLDLPPQLEELETCAKIE 141
            LLDL P+LEE+E C KIE
Sbjct: 698 TLLDLCPELEEMEICEKIE 711

[Close]

BLAST of Lcy10g004120 vs. NCBI nr
Match: TYK16769.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 93/139 (66.91%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SMESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKY 61
           +ME+ A  S   L RYKR R+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  KY
Sbjct: 578 TMETDA--SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKY 637

Query: 62  QVLSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWIRGQS 121
            +LSKIA+D+  VPVS    VASES F+TGGRILDSFRSSL+P  VEALICT+NWIRG++
Sbjct: 638 PILSKIAQDIFAVPVS---TVASESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKT 697

Query: 122 ILLDLPPQLEELETCAKIE 141
            LLDL P+LEE+E C KIE
Sbjct: 698 TLLDLCPELEEMEICEKIE 711

[Close]

BLAST of Lcy10g004120 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 85.1 bits (209), Expect = 5.3e-17
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 4   ESGASPSASNLDRYKRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKYQV 63
           E G +   S+ D Y     E +   LK ++D+YL +  +    +FDVL WWK N+ KY  
Sbjct: 567 EGGKADGLSDFDTYIM---ETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPT 626

Query: 64  LSKIARDVLTVPVSIVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWI 118
           LSK+ARD+L++PVS  A    +  F+   R +D +++SL P  VEALIC R W+
Sbjct: 627 LSKMARDILSIPVSAAAF---DYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

[Close]

BLAST of Lcy10g004120 vs. TAIR 10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 54.3 bits (129), Expect = 9.9e-08
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 18  KRIREEKSSLELKDDVDRYLSDDCVELNDKFDVLAWWKLNESKYQVLSKIARDVLTVPVS 77
           +R R    S  + D++ +YLS+  V +  + DVL WWK+N  +Y  LS +ARD L V  +
Sbjct: 555 RRKRRGSMSNNVVDELTQYLSESIVPM--QTDVLDWWKVNSGRYPRLSNMARDFLAVQAT 614

Query: 78  IVAIVASESTFNTGGRILDSFRSSLTPTIVEALICTRNWI 118
                A E  F   G  +D  +  +     +++IC R+WI
Sbjct: 615 ---SAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWI 649

The following BLAST results are available for this feature:

BLAST of Lcy10g004120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9FJG3	3.9e-17	42.42	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q6AVI0	5.1e-17	41.41	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
P08770	6.7e-17	44.33	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
P03010	6.7e-17	44.33	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]
Q9M2N5	7.4e-16	40.35	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]

BLAST of Lcy10g004120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8W5	1.3e-42	65.73	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3C1C9	1.3e-42	65.73	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3C9B8	2.1e-42	65.07	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7VIJ7	1.1e-41	66.91	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3DTE1	1.1e-41	66.91	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of Lcy10g004120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050616.1	2.6e-42	65.73	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK05741.1	2.6e-42	65.73	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
KAA0065439.1	4.4e-42	65.07	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0067548.1	2.2e-41	66.91	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK16769.1	2.2e-41	66.91	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of Lcy10g004120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	5.3e-17	40.35	BED zinc finger ;hAT family dimerisation domain	[more]
AT1G18560.1	9.9e-08	33.00	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 33..117 e-value: 2.7E-27 score: 94.4
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 20..122
None	No IPR available	PANTHER	PTHR23272:SF15	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1	coord: 20..122
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 14..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g004120.1	Lcy10g004120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity