Lcy10g002260 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g002260
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	replication protein A 70 kDa DNA-binding subunit B-like
Location	Chr10: 3065797 .. 3066187 (+)
RNA-Seq Expression	Lcy10g002260
Synteny	Lcy10g002260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGCGATTCAACAGCAACCTGTCTAATTTGTGAGGATGAGAAGTCAAAATTTGTGAGAAAATATTTGTTGAGGTTAATCGTATCAGACGGTGAAGAAGAAGCTTATTTGACAATGTTTGATGCTGCCGAATACTTGATTGGATGTAGTGCGACAGAATATTTTAAGGATTTAAAGGTAATTATAAAATTTCTTTATTTTTATTCTTTTTTTTAAATTAAAAAACTAATATAAATGTGTGATGCAGGATACCAAAAAGGAGAAAAGCAAAGGTTATAAAAACTTGGTGGTGGCTGAAGATAAAAAATATTGCTTTTTGGTGAGGATGGATAAAACAGGGGAGCATGATCGGGCAAGAAAACAGATTGTCGTTCAAGAAGTTTGTACG

mRNA sequence

ATGGAATGCGATTCAACAGCAACCTGTCTAATTTGTGAGGATGAGAAGTCAAAATTTGTGAGAAAATATTTGTTGAGGTTAATCGTATCAGACGGTGAAGAAGAAGCTTATTTGACAATGTTTGATGCTGCCGAATACTTGATTGGATGTAGTGCGACAGAATATTTTAAGGATTTAAAGGATACCAAAAAGGAGAAAAGCAAAGGTTATAAAAACTTGGTGGTGGCTGAAGATAAAAAATATTGCTTTTTGGTGAGGATGGATAAAACAGGGGAGCATGATCGGGCAAGAAAACAGATTGTCGTTCAAGAAGTTTGTACG

Coding sequence (CDS)

ATGGAATGCGATTCAACAGCAACCTGTCTAATTTGTGAGGATGAGAAGTCAAAATTTGTGAGAAAATATTTGTTGAGGTTAATCGTATCAGACGGTGAAGAAGAAGCTTATTTGACAATGTTTGATGCTGCCGAATACTTGATTGGATGTAGTGCGACAGAATATTTTAAGGATTTAAAGGATACCAAAAAGGAGAAAAGCAAAGGTTATAAAAACTTGGTGGTGGCTGAAGATAAAAAATATTGCTTTTTGGTGAGGATGGATAAAACAGGGGAGCATGATCGGGCAAGAAAACAGATTGTCGTTCAAGAAGTTTGTACG

Protein sequence

MECDSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTKKEKSKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEVCT

Homology

[Close]

BLAST of Lcy10g002260 vs. ExPASy TrEMBL
Match: A0A0A0KP46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526360 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 24 LLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTKKEKSKGYKNLVVAEDKKYCF 83
          +LRL +SDG+++ Y+T+FDA++YLIGCS TEY+KDL+  KKEKSK Y+NLV+ EDKKYCF
Sbjct: 1  MLRLTISDGDDKTYITIFDASKYLIGCSVTEYYKDLQVYKKEKSKLYQNLVLCEDKKYCF 60

[Close]

BLAST of Lcy10g002260 vs. ExPASy TrEMBL
Match: A0A1S4BU38 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107811908 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           D+ ATC  C     ++  +YLL+L + D +E  Y+T+F+A +YL+GC  T Y + +   K
Sbjct: 258 DNIATCPRC-GSNVEYEERYLLKLELFDEKEHCYITLFEATKYLLGCDVTTYVRSISQ-K 317

Query: 64  KEKSKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEV 106
           KE+SK Y+ LV ++DK++ FLV++D     DR  K ++ +E+
Sbjct: 318 KEESKYYRKLVSSKDKEFTFLVKLDPRIGGDRPGKSLIAEEL 357

[Close]

BLAST of Lcy10g002260 vs. ExPASy TrEMBL
Match: A0A1U7W7M5 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana sylvestris OX=4096 GN=LOC104225846 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           D+ ATC  C     ++  +YLL+L + D +E  Y+T+F+A +YL+GC  T Y + +   K
Sbjct: 258 DNIATCPRC-GSNVEYEERYLLKLELFDEKEHCYITLFEATKYLLGCDVTTYVRSISQ-K 317

Query: 64  KEKSKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEV 106
           KE+SK Y+ LV ++DK++ FLV++D     DR  K ++ +E+
Sbjct: 318 KEESKYYRKLVSSKDKEFTFLVKLDPRIGGDRPGKSLIAEEL 357

[Close]

BLAST of Lcy10g002260 vs. ExPASy TrEMBL
Match: A0A1S4CG46 (replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=4097 GN=LOC107818567 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           ++ A C  C  E   +  KY+L+L V D +E  Y+T+F++  YL+GC  T Y + +   K
Sbjct: 89  NNIAKCHRCGVENVDYQEKYILKLEVFDKKERCYVTLFESTRYLLGCDVTTYIQSISQ-K 148

Query: 64  KEKSKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEV 106
           KE+SK Y+ LV++ +K++ FLV++D     DR  ++ + +E+
Sbjct: 149 KEESKFYRKLVLSREKEFTFLVKIDSKNGGDRDGRRFIAEEI 189

[Close]

BLAST of Lcy10g002260 vs. ExPASy TrEMBL
Match: A0A1J6IT36 (Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_30234 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.8e-11
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 6   TATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTKKE 65
           TATC  C  E   +  +Y LR+ VS GE    + +FDAAEYL GC   EY + +  TKKE
Sbjct: 171 TATCGSCNIENVDYESRYCLRIEVSAGERRVRVILFDAAEYLFGCDVKEYIQSI-CTKKE 230

Query: 66  KSKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEV 106
           +S  Y+ LV+++DK++ FLV++D   ++  + + ++ QE+
Sbjct: 231 ESNYYRKLVLSKDKEFIFLVKID--NKNKNSGRILIAQEI 267

[Close]

BLAST of Lcy10g002260 vs. NCBI nr
Match: KGN51395.1 (hypothetical protein Csa_008714 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 9.5e-15
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 24 LLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTKKEKSKGYKNLVVAEDKKYCF 83
          +LRL +SDG+++ Y+T+FDA++YLIGCS TEY+KDL+  KKEKSK Y+NLV+ EDKKYCF
Sbjct: 1  MLRLTISDGDDKTYITIFDASKYLIGCSVTEYYKDLQVYKKEKSKLYQNLVLCEDKKYCF 60

[Close]

BLAST of Lcy10g002260 vs. NCBI nr
Match: XP_020242412.1 (replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           DS A C  C  E +++  KYL+RL V D  ++AY+T+FD A +L GCSA EY     +  
Sbjct: 34  DSIANCNNCNTEDAEWEIKYLMRLEVKDHIDKAYVTLFDEARFLTGCSAEEYVDSFDEEG 93

Query: 64  KEK-SKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEVCT 108
           KE  S  Y+ ++   DK+Y FLV+M++  E  R   +I  QE+C+
Sbjct: 94  KEHLSPMYQKMMSCCDKEYLFLVKMNRKDEEKRIEGRITAQEICS 138

[Close]

BLAST of Lcy10g002260 vs. NCBI nr
Match: XP_020245860.1 (replication protein A 70 kDa DNA-binding subunit B-like isoform X1 [Asparagus officinalis])

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-11
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           DS A C  C  + +++  KYL+RL V D  ++AY+ +FD A YL GCS  EY     +  
Sbjct: 34  DSIANCNNCNTKDAEWEIKYLMRLEVKDHIDKAYVILFDEARYLTGCSTEEYVDSFNEEG 93

Query: 64  KEK-SKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEVCT 108
           KE  S  Y+ ++   DK+Y FLV+M++  E  R   +I  QE+C+
Sbjct: 94  KEHLSPMYQKMMTCCDKEYLFLVKMNRKDEEKRIEGRITAQEICS 138

[Close]

BLAST of Lcy10g002260 vs. NCBI nr
Match: XP_020276012.1 (replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           D    C  C  E +++  KYL+RL V D  ++AY+T+FD   YL GCSA EY     +  
Sbjct: 34  DIITNCNSCNTEDAEWEIKYLMRLEVKDHIDKAYVTLFDEPRYLTGCSAEEYVDSFNEEG 93

Query: 64  KEK-SKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEVCT 108
           KE  S  Y+ ++   DK+Y FLV+M++  E  R   +I  QE+C+
Sbjct: 94  KENLSPMYQKMMSCCDKEYLFLVKMNRKDEEKRIEGRITAQELCS 138

[Close]

BLAST of Lcy10g002260 vs. NCBI nr
Match: XP_009776017.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana sylvestris] >XP_016492385.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   DSTATCLICEDEKSKFVRKYLLRLIVSDGEEEAYLTMFDAAEYLIGCSATEYFKDLKDTK 63
           D+ ATC  C     ++  +YLL+L + D +E  Y+T+F+A +YL+GC  T Y + +   K
Sbjct: 258 DNIATCPRC-GSNVEYEERYLLKLELFDEKEHCYITLFEATKYLLGCDVTTYVRSISQ-K 317

Query: 64  KEKSKGYKNLVVAEDKKYCFLVRMDKTGEHDRARKQIVVQEV 106
           KE+SK Y+ LV ++DK++ FLV++D     DR  K ++ +E+
Sbjct: 318 KEESKYYRKLVSSKDKEFTFLVKLDPRIGGDRPGKSLIAEEL 357

The following BLAST results are available for this feature:

BLAST of Lcy10g002260 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g002260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP46	4.6e-15	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526360 PE=4 SV=1	[more]
A0A1S4BU38	3.1e-11	38.24	replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=...	[more]
A0A1U7W7M5	3.1e-11	38.24	replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana sylvestris ...	[more]
A0A1S4CG46	5.2e-11	35.29	replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=...	[more]
A0A1J6IT36	6.8e-11	40.00	Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_3...	[more]

BLAST of Lcy10g002260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51395.1	9.5e-15	66.67	hypothetical protein Csa_008714 [Cucumis sativus]	[more]
XP_020242412.1	4.4e-12	40.95	replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]	[more]
XP_020245860.1	2.8e-11	39.05	replication protein A 70 kDa DNA-binding subunit B-like isoform X1 [Asparagus of...	[more]
XP_020276012.1	6.3e-11	39.05	replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]	[more]
XP_009776017.1	6.3e-11	38.24	PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana sy...	[more]

BLAST of Lcy10g002260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 4..103 e-value: 1.4E-9 score: 37.9
None	No IPR available	GENE3D	2.40.50.140		coord: 1..106 e-value: 2.3E-10 score: 42.0
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g002260.1	Lcy10g002260.1	mRNA