Lcy10g000740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g000740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	extensin-like
Location	Chr10: 852118 .. 852934 (+)
RNA-Seq Expression	Lcy10g000740
Synteny	Lcy10g000740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTATTTCCGCTGAACCCTTCCTTCAATTTTCATCAGTTTCAACTAAATAAAAAAAACTTCCATTTCTTCATTCTCTATGTAAACATGGACCTCACTTCACATCTCCATTCCCAATCTTTCAAAGAATCACAAAGGAACAACATGGATTTTAAAGCTCGTCTTTGCCTCTTCTTGATGTTGCTCTCGTTTGCCCTCGCTTGCTCGGCTCGGATCACGCCCCATTCAGGTACGCAAGTCGTTACTGATCCAACGAGTCTAGATTCGTGTAGTTTGTGTTTTGAATTAGTATAGAAAAATAAAATTCAAAACCATCCGTTTTATATAAACTAAATGATCTAACTCGTGAGTCAAACATCTCGTTTGAAGCTTCAGGAAAGCAAACGATGACGGTTGTAATAGACGACTATGCTGATCCTGGAGCAAATCCAAGTCATGATCCAAACCAACCAACGACGCCACCACCACCCTTGCGGTTTGAGCTTCTAACTGACAGGAGTCGGAAGGATGACGTCAACATGGAGCCATGAACAAATATGTTTGTAAAGGGAGGACCTGTTAGTAGCAACATCAACAAGAAAGCTCAAACAAAGAATATGATGATATGTATAAGCAATCATAGTACTAAAAGTTAATATATTATTGATGTAAATAATTTTATTTATGTGTTGAGAATGTAATAATATATCAAATTGATGTAATGAATAGTCAAATAAGTATATGCTTATGTATAATATTTTTTTTTAGTTCAACAACATTTGGGGGTGGGGAGATTCAAACCTCTGACCTCTTAGTCGAAGGTATATGTCAATTACCG

mRNA sequence

CAGCTATTTCCGCTGAACCCTTCCTTCAATTTTCATCAGTTTCAACTAAATAAAAAAAACTTCCATTTCTTCATTCTCTATGTAAACATGGACCTCACTTCACATCTCCATTCCCAATCTTTCAAAGAATCACAAAGGAACAACATGGATTTTAAAGCTCGTCTTTGCCTCTTCTTGATGTTGCTCTCGTTTGCCCTCGCTTGCTCGGCTCGGATCACGCCCCATTCAGCTTCAGGAAAGCAAACGATGACGGTTGTAATAGACGACTATGCTGATCCTGGAGCAAATCCAAGTCATGATCCAAACCAACCAACGACGCCACCACCACCCTTGCGGTTTGAGCTTCTAACTGACAGGAGTCGGAAGGATGACGTCAACATGGAGCCATGAACAAATATGTTTGTAAAGGGAGGACCTGTTAGTAGCAACATCAACAAGAAAGCTCAAACAAAGAATATGATGATATGTATAAGCAATCATAGTACTAAAAGTTAATATATTATTGATGTAAATAATTTTATTTATGTGTTGAGAATGTAATAATATATCAAATTGATGTAATGAATAGTCAAATAAGTATATGCTTATGTATAATATTTTTTTTTAGTTCAACAACATTTGGGGGTGGGGAGATTCAAACCTCTGACCTCTTAGTCGAAGGTATATGTCAATTACCG

Coding sequence (CDS)

ATGGACCTCACTTCACATCTCCATTCCCAATCTTTCAAAGAATCACAAAGGAACAACATGGATTTTAAAGCTCGTCTTTGCCTCTTCTTGATGTTGCTCTCGTTTGCCCTCGCTTGCTCGGCTCGGATCACGCCCCATTCAGCTTCAGGAAAGCAAACGATGACGGTTGTAATAGACGACTATGCTGATCCTGGAGCAAATCCAAGTCATGATCCAAACCAACCAACGACGCCACCACCACCCTTGCGGTTTGAGCTTCTAACTGACAGGAGTCGGAAGGATGACGTCAACATGGAGCCATGA

Protein sequence

MDLTSHLHSQSFKESQRNNMDFKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTPPPPLRFELLTDRSRKDDVNMEP

Homology

[Close]

BLAST of Lcy10g000740 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 22 FKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTPPPP 81
          FKARL    +LLSFAL  SARI PHS +  Q    +I+DY DPGANP HDP     PPPP
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSEN--QEAAYMINDYPDPGANPRHDP----FPPPP 62

Query: 82 LRFEL 87
           +FE+
Sbjct: 64 QQFEI 62

[Close]

BLAST of Lcy10g000740 vs. ExPASy TrEMBL
Match: A0A6J1KAU3 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111493256 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.6e-08
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 20 MDFKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTT-P 79
          M+FKARLCL + LLSFAL  SA+I   S SGKQ   +VI+DY+DPG NP+  P  P   P
Sbjct: 1  MEFKARLCL-VFLLSFALVSSAQIMSDSVSGKQATEIVINDYSDPGKNPTLSPVVPKQFP 60

Query: 80 PPPLRFE 86
          PPP  F+
Sbjct: 61 PPPPDFK 66

[Close]

BLAST of Lcy10g000740 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 20 MDF-KARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTP 79
          MD+ KARL LFL LLSFALA SARI PHS +  Q  T +++DY+DPGANP HDP      
Sbjct: 1  MDYSKARLALFL-LLSFALATSARIIPHSEN--QEATYIMNDYSDPGANPRHDPF----- 60

Query: 80 PPPLR--FELLTDRSR 93
          PPPL   FE+   R R
Sbjct: 61 PPPLEHSFEVNAVRGR 68

[Close]

BLAST of Lcy10g000740 vs. ExPASy TrEMBL
Match: A0A6J1GAA0 (extensin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452213 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 20 MDFKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTT-P 79
          M+FK  LCL + LLSFAL  SARI   S SGKQ   +VI+DY+DPG NP+  P  P   P
Sbjct: 1  MEFKGCLCL-VFLLSFALVSSARIMSDSVSGKQATKIVINDYSDPGKNPTLSPVVPKQFP 60

Query: 80 PPPLRFE 86
          PPP  FE
Sbjct: 61 PPPPDFE 66

[Close]

BLAST of Lcy10g000740 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 20 MDF-KARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTP 79
          MD+ KARL LFL LLSF L  SARI PHS +  Q    +I+DY DPGANP HDP     P
Sbjct: 1  MDYSKARLALFL-LLSFVLVTSARIIPHSEN--QEAAYMINDYPDPGANPRHDP----FP 60

Query: 80 PPPLRFELLTDRSRKDDVNM 99
          PP  +FE+   +  +   N+
Sbjct: 61 PPSQQFEVSVVKGHRIKKNL 73

[Close]

BLAST of Lcy10g000740 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 22 FKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQP 76
          FKARL  FL LLSFAL   ARITPHS S  Q  T+ I+DYADPGANP HDPNQP
Sbjct: 4  FKARLTFFL-LLSFALITLARITPHSES--QNNTITINDYADPGANPRHDPNQP 54

[Close]

BLAST of Lcy10g000740 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 22 FKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTPPPP 81
          FKARL    +LLSFAL  SARI PHS +  Q    +I+DY DPGANP HDP     PPPP
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSEN--QEAAYMINDYPDPGANPRHDP----FPPPP 62

Query: 82 LRFEL 87
           +FE+
Sbjct: 64 QQFEI 62

[Close]

BLAST of Lcy10g000740 vs. NCBI nr
Match: XP_022998671.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 20 MDFKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTT-P 79
          M+FKARLCL + LLSFAL  SA+I   S SGKQ   +VI+DY+DPG NP+  P  P   P
Sbjct: 1  MEFKARLCL-VFLLSFALVSSAQIMSDSVSGKQATEIVINDYSDPGKNPTLSPVVPKQFP 60

Query: 80 PPPLRFE 86
          PPP  F+
Sbjct: 61 PPPPDFK 66

[Close]

BLAST of Lcy10g000740 vs. NCBI nr
Match: XP_023525538.1 (uncharacterized protein LOC111789123 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 20 MDFKARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTPP 79
          M+FKARLCL + LLSFAL  S+RI   S SG Q   +VI+DY D G NPSH P  P+   
Sbjct: 1  MEFKARLCL-VFLLSFALVSSSRIMSDSVSGIQDNMIVINDYPDAGPNPSHSPIIPSALL 60

Query: 80 PPLRFE 86
          PP +FE
Sbjct: 61 PPPQFE 65

[Close]

BLAST of Lcy10g000740 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 20 MDF-KARLCLFLMLLSFALACSARITPHSASGKQTMTVVIDDYADPGANPSHDPNQPTTP 79
          MD+ KARL LFL LLSFALA SARI PHS +  Q  T +++DY+DPGANP HDP      
Sbjct: 1  MDYSKARLALFL-LLSFALATSARIIPHSEN--QEATYIMNDYSDPGANPRHDPF----- 60

Query: 80 PPPLR--FELLTDRSR 93
          PPPL   FE+   R R
Sbjct: 61 PPPLEHSFEVNAVRGR 68

The following BLAST results are available for this feature:

BLAST of Lcy10g000740 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g000740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH7	6.6e-08	56.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1KAU3	8.6e-08	56.72	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111493256 PE=4 SV=1	[more]
A0A0A0M0T8	2.5e-07	57.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
A0A6J1GAA0	2.5e-07	56.72	extensin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452213 PE=4 SV=1	[more]
A0A5A7SPC6	2.1e-06	50.00	Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P...	[more]

BLAST of Lcy10g000740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895781.1	1.2e-08	72.22	circumsporozoite protein-like [Benincasa hispida]	[more]
KAA0031838.1	1.4e-07	56.92	hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa]	[more]
XP_022998671.1	1.8e-07	56.72	extensin-like [Cucurbita maxima]	[more]
XP_023525538.1	5.2e-07	56.06	uncharacterized protein LOC111789123 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KGN65816.1	5.2e-07	57.89	hypothetical protein Csa_023196 [Cucumis sativus]	[more]

BLAST of Lcy10g000740 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g000740.1	Lcy10g000740.1	mRNA