Lcy09g021110 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g021110
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DYW_deaminase domain-containing protein
Location	Chr09: 46643248 .. 46643601 (-)
RNA-Seq Expression	Lcy09g021110
Synteny	Lcy09g021110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAGCCGCTGCCAGTTTCTGTGTTGCCTTGTCTCTAGCTGTCTTCTTTTCCTTGTCTCCGGCGGCCGTCGGCGCCGGAGTTCAGCCCTCTTCAATCTCAGCGTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGTCTTCGTTCTTCCCTTCTCCGATTGATGAGGGTTCTTCTCCCATCTCTGCAACTCCTCTAAGTTCAGAGTCGCCGGCGCCGGCGCCGGGCTCCGGCGAGTTCATGGGGAAAAGTGGGTCCAGCTCAGTGAAGCTCAATTACGGCGTCTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTTAGTTTAAGACTGTTTCTTAATGTTTGA

mRNA sequence

ATGGCTACAGCCGCTGCCAGTTTCTGTGTTGCCTTGTCTCTAGCTGTCTTCTTTTCCTTGTCTCCGGCGGCCGTCGGCGCCGGAGTTCAGCCCTCTTCAATCTCAGCGTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGTCTTCGTTCTTCCCTTCTCCGATTGATGAGGGTTCTTCTCCCATCTCTGCAACTCCTCTAAGTTCAGAGTCGCCGGCGCCGGCGCCGGGCTCCGGCGAGTTCATGGGGAAAAGTGGGTCCAGCTCAGTGAAGCTCAATTACGGCGTCTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTTAGTTTAAGACTGTTTCTTAATGTTTGA

Coding sequence (CDS)

ATGGCTACAGCCGCTGCCAGTTTCTGTGTTGCCTTGTCTCTAGCTGTCTTCTTTTCCTTGTCTCCGGCGGCCGTCGGCGCCGGAGTTCAGCCCTCTTCAATCTCAGCGTCTCCGGCTGTTTCACCTCACAGAACTTCACAAAATATGTCTTCGTTCTTCCCTTCTCCGATTGATGAGGGTTCTTCTCCCATCTCTGCAACTCCTCTAAGTTCAGAGTCGCCGGCGCCGGCGCCGGGCTCCGGCGAGTTCATGGGGAAAAGTGGGTCCAGCTCAGTGAAGCTCAATTACGGCGTCTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTTAGTTTAAGACTGTTTCTTAATGTTTGA

Protein sequence

MATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEGSSPISATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSICTFFSLRLFLNV

Homology

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BLAST of Lcy09g021110 vs. ExPASy TrEMBL
Match: A0A6J1F8A3 (uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC111441775 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MATAAAS-FCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDE 60
           MATAAA+ FCVALSLA FF++SPAAV      S+ISASP V PHR SQNMSSFFPSP+D 
Sbjct: 1   MATAAAAFFCVALSLAAFFAVSPAAV------SAISASPPVPPHRASQNMSSFFPSPVDG 60

Query: 61  GSSPISATPLSSESPAPAPGSGEFMGK-SGSSSVKLNYGVSAFGLSICTFFSLRLFLNV 118
            SSPISA P    +PA A  SGEF+GK SGS+SVKLN+G+SAFGLSIC+ FSLRLFLNV
Sbjct: 61  RSSPISAAP----APATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of Lcy09g021110 vs. ExPASy TrEMBL
Match: A0A6J1J7U9 (uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 78/117 (66.67%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   ATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEGS 61
           A AA+ FCVALSLA  F+LSP+AV      S+ISASP V PHR SQNMSSFFPSP+D  S
Sbjct: 8   AAAASFFCVALSLATLFALSPSAV------SAISASPPVPPHRASQNMSSFFPSPVDGRS 67

Query: 62  SPISATPLSSESPAPAPGSGEFMGK-SGSSSVKLNYGVSAFGLSICTFFSLRLFLNV 118
           SPISA        APA  SGEF+GK SGS+SVKLN+G+SAFGLSIC+ F LRL LNV
Sbjct: 68  SPISA--------APALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of Lcy09g021110 vs. ExPASy TrEMBL
Match: A0A5N6QUU6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
           MAT +  FC ALS+A+FF++      +     +ISASPAV+P+ TS NMSSFFPSP D+ 
Sbjct: 1   MAT-STKFCAALSMAIFFAILHGR--SSTCEPTISASPAVTPYITSPNMSSFFPSPSDQ- 60

Query: 61  SSPISATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSI 106
             P SA P +SE+ AP P SGEF+GKS S+SV+   G++  G+ +
Sbjct: 61  RPPSSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITICGVGL 101

[Close]

BLAST of Lcy09g021110 vs. ExPASy TrEMBL
Match: A0A2C9UZ32 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G077600 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 5   AASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEGSSPI 64
           +AS   A+S+ + FS     V A     +I+ASPAV P  T+ NMSSFFP+P D+   P+
Sbjct: 8   SASAVAAMSVVLLFS----NVLALSSNPTITASPAVLPDVTAPNMSSFFPAPSDQW--PL 67

Query: 65  -SATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSICTFFSLRL 114
            SA P   E+ AP P SGEF+GKS S S KL+   + FG+ IC    +RL
Sbjct: 68  NSADPPVPEALAPVPSSGEFIGKSSSGSAKLSGHSALFGVGICIILVIRL 111

[Close]

BLAST of Lcy09g021110 vs. ExPASy TrEMBL
Match: A0A2N9I0C8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.2e-06
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
           MAT   S C ALS+ + F++  A   +     +ISASPAVSP+ T+ NMSSFF SP  + 
Sbjct: 1   MATITKS-CAALSIVICFAILYAP--SSTSEPTISASPAVSPYVTAPNMSSFFNSPSVQR 60

Query: 61  SSPISATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSICTFFSLRL 114
               +A P  SE+  P P SGEF+G+S S+S + + G++ FG+ +   F  RL
Sbjct: 61  PLSSAAAP-HSEAITPVPRSGEFVGRSSSNSARSDLGITIFGVGLVCLFVTRL 109

[Close]

BLAST of Lcy09g021110 vs. NCBI nr
Match: XP_022934640.1 (uncharacterized protein LOC111441775 [Cucurbita moschata])

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MATAAAS-FCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDE 60
           MATAAA+ FCVALSLA FF++SPAAV      S+ISASP V PHR SQNMSSFFPSP+D 
Sbjct: 1   MATAAAAFFCVALSLAAFFAVSPAAV------SAISASPPVPPHRASQNMSSFFPSPVDG 60

Query: 61  GSSPISATPLSSESPAPAPGSGEFMGK-SGSSSVKLNYGVSAFGLSICTFFSLRLFLNV 118
            SSPISA P    +PA A  SGEF+GK SGS+SVKLN+G+SAFGLSIC+ FSLRLFLNV
Sbjct: 61  RSSPISAAP----APATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of Lcy09g021110 vs. NCBI nr
Match: XP_022983589.1 (uncharacterized protein LOC111482150 [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-23
Identity = 78/117 (66.67%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   ATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEGS 61
           A AA+ FCVALSLA  F+LSP+AV      S+ISASP V PHR SQNMSSFFPSP+D  S
Sbjct: 8   AAAASFFCVALSLATLFALSPSAV------SAISASPPVPPHRASQNMSSFFPSPVDGRS 67

Query: 62  SPISATPLSSESPAPAPGSGEFMGK-SGSSSVKLNYGVSAFGLSICTFFSLRLFLNV 118
           SPISA        APA  SGEF+GK SGS+SVKLN+G+SAFGLSIC+ F LRL LNV
Sbjct: 68  SPISA--------APALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of Lcy09g021110 vs. NCBI nr
Match: KAF5479257.1 (hypothetical protein F2P56_000093, partial [Juglans regia])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 56/117 (47.86%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 1   MATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
           MAT   +FC ALS+A+ F++S A   +     +ISASP+V P+ T+ NMSSFFPSP  +G
Sbjct: 7   MAT-ITNFCAALSVAIIFAISNAP--SSTSEPTISASPSVLPYVTAPNMSSFFPSPSAQG 66

Query: 61  SSPISATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSICTFFSLRLFLNV 118
             P SATP +SE+ AP P SGEF+GKS S S +L+ G    G  + + F  RL   V
Sbjct: 67  -PPNSATPPNSETLAPVPSSGEFVGKSSSDSTRLDSGTFISGFGLVSMFVTRLIFVV 119

[Close]

BLAST of Lcy09g021110 vs. NCBI nr
Match: KAG6621778.1 (hypothetical protein I3842_Q002500 [Carya illinoinensis])

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 1   MATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
           MAT   +FC A+S+A+ F++S A   +     +ISASP+V P+ T+ NMSSFFPSP  +G
Sbjct: 1   MAT-ITNFCAAVSVAIIFAISHAT--SSTSEPTISASPSVLPYVTAPNMSSFFPSPSVQG 60

Query: 61  SSPISATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSICTFFSLRLFLNV 118
             P S TP +SE+ AP P SGEF+GKS S S +L+ G+   G  + + F   L L V
Sbjct: 61  -PPSSTTPPNSETLAPVPSSGEFVGKSSSDSTRLDSGILISGFGLVSMFMTSLILVV 113

[Close]

BLAST of Lcy09g021110 vs. NCBI nr
Match: KAE8021266.1 (hypothetical protein FH972_007173 [Carpinus fangiana])

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MATAAASFCVALSLAVFFSLSPAAVGAGVQPSSISASPAVSPHRTSQNMSSFFPSPIDEG 60
           MAT +  FC ALS+A+FF++      +     +ISASPAV+P+ TS NMSSFFPSP D+ 
Sbjct: 1   MAT-STKFCAALSMAIFFAILHGR--SSTCEPTISASPAVTPYITSPNMSSFFPSPSDQ- 60

Query: 61  SSPISATPLSSESPAPAPGSGEFMGKSGSSSVKLNYGVSAFGLSI 106
             P SA P +SE+ AP P SGEF+GKS S+SV+   G++  G+ +
Sbjct: 61  RPPSSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITICGVGL 101

[Close]

BLAST of Lcy09g021110 vs. TAIR 10
Match: AT1G12845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 32  SSISASPAVSPHRTSQNMSSFFPSPIDEGSSPISATPLSSESPAPAPGSGEFMGKSGSSS 91
           S+I ASPAV P+  + +MSSFFPSP  +     + +P+  E  AP P SG+  GK    S
Sbjct: 28  STILASPAVLPYINAPDMSSFFPSPTKDWPIETATSPV-PEPEAPGPSSGQLNGKISGRS 87

Query: 92  VKLNYGVSAF--GLSICTF 109
           ++L+  +S     + ICTF
Sbjct: 88  MRLHPDISLVLAIVGICTF 105

The following BLAST results are available for this feature:

BLAST of Lcy09g021110 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g021110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8A3	1.3e-26	71.43	uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J7U9	2.2e-23	66.67	uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150...	[more]
A0A5N6QUU6	1.7e-10	49.52	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1	[more]
A0A2C9UZ32	5.5e-06	45.45	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G077600 PE=4 SV=...	[more]
A0A2N9I0C8	7.2e-06	42.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1	[more]

BLAST of Lcy09g021110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934640.1	2.6e-26	71.43	uncharacterized protein LOC111441775 [Cucurbita moschata]	[more]
XP_022983589.1	4.6e-23	66.67	uncharacterized protein LOC111482150 [Cucurbita maxima]	[more]
KAF5479257.1	1.2e-10	47.86	hypothetical protein F2P56_000093, partial [Juglans regia]	[more]
KAG6621778.1	3.4e-10	46.15	hypothetical protein I3842_Q002500 [Carya illinoinensis]	[more]
KAE8021266.1	3.4e-10	49.52	hypothetical protein FH972_007173 [Carpinus fangiana]	[more]

BLAST of Lcy09g021110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12845.1	1.3e-04	40.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g021110.1	Lcy09g021110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane