Lcy09g021000 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g021000
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr09: 46526989 .. 46527153 (+)
RNA-Seq ExpressionLcy09g021000
SyntenyLcy09g021000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAATTGTGTGTCTTTGGATGTTCCTTTGAATGGAGGTCAGGAGAAATTTGCTCATTATGATCTTTGGTTATCCCACATCTGCTTGATTTTCTTCATGAAGAACTTCATGGACATCGCAGAGGGTATGGCTAAATCATGGATACATTTGGAAGATACATAG

mRNA sequence

ATGAGGAATTGTGTGTCTTTGGATGTTCCTTTGAATGGAGGTCAGGAGAAATTTGCTCATTATGATCTTTGGTTATCCCACATCTGCTTGATTTTCTTCATGAAGAACTTCATGGACATCGCAGAGGGTATGGCTAAATCATGGATACATTTGGAAGATACATAG

Coding sequence (CDS)

ATGAGGAATTGTGTGTCTTTGGATGTTCCTTTGAATGGAGGTCAGGAGAAATTTGCTCATTATGATCTTTGGTTATCCCACATCTGCTTGATTTTCTTCATGAAGAACTTCATGGACATCGCAGAGGGTATGGCTAAATCATGGATACATTTGGAAGATACATAG

Protein sequence

MRNCVSLDVPLNGGQEKFAHYDLWLSHICLIFFMKNFMDIAEGMAKSWIHLEDT
Homology
[Close]
BLAST of Lcy09g021000 vs. NCBI nr
Match: KAG7017854.1 (hypothetical protein SDJN02_19720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 6.2e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1  MRNCVSLDVPLNGGQEKFAHYDLWLSHICLIFFMKNFMDIAEGMAKSWIHLEDT 55
          M NC+SLDV LNGG++ FAHY+LW+SHICLI F  N M + EG A+SWIHLEDT
Sbjct: 31 MTNCMSLDVDLNGGRKNFAHYELWISHICLILFTTNSMSMDEGTARSWIHLEDT 84

[Close]
BLAST of Lcy09g021000 vs. NCBI nr
Match: KAG7022636.1 (hypothetical protein SDJN02_16370, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 7.1e-11
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MRNCVSLDVPLNGGQEKFAHYDLWLSHICLIFFMKNFMDIAEG 44
          MRNCVSLDV LNGGQ+KFAH DLW+S ICLIFFMKN M + EG
Sbjct: 28 MRNCVSLDVHLNGGQKKFAHCDLWISLICLIFFMKNSMGMEEG 70

The following BLAST results are available for this feature:
BLAST of Lcy09g021000 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g021000 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g021000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017854.16.2e-1568.52hypothetical protein SDJN02_19720, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7022636.17.1e-1179.07hypothetical protein SDJN02_16370, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lcy09g021000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g021000.1Lcy09g021000.1mRNA