Lcy09g018830 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g018830
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr09: 41888709 .. 41890121 (+)
RNA-Seq ExpressionLcy09g018830
SyntenyLcy09g018830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGATCTCCACTTCAATATTTGCAATATCAAGCTTCATGAGGAAGGAGAACAACTCAAGAAACATGAAGACACCAAACACGAGATCTCCAATTCTGGTGTTATATAGGGCTTGAGCCTTAAAGTAGTGTTTTAATGTAAATTCTTCTTGTAACCTTCTTTTGGACATCATGTATAATTTATTTAATAGGTATTAGGCCCAAGAATTGGGTTATCTACATTTTAGAGACTCATATAGAGAAACCCTAAATTTGTGTAACTTAGAACACTATTTACTTTAGGTTTTAATTAGTTTAAGTTTATTTTAGGGGTTAGTTAGGGTTTTCTTATTTAAGGATATTTAAAGTCAAAACCTGTACATTTGAGGGGGTTTTAGATTTTTCATGGATGAATGAAAGAGCCCTTTAAGCATTTTCTTTGCTCCAAATTGCGAGCATATCTTGTGTATTTTCTTGCTTTATAACTTGTATGCCCTAGAAACCCTCCACAAGTTTGGTCATCAAACTTGTGAAGGGTTTTGACTTTGAATTGGAAACGAGTCTCTCTATTGGAAGTTTTGACCCTCAAGGTTAGTCTTTTCTTCTTTCTCTTGAGTAAACACCTTGGGATTGCTTCCTTCAGCTCCTTATAGAAAATCTCCTTCCAAAAGCCTCCCCTTTTGTCTAAAAGCGACGACAAGAATAAATACCCTCATTAGACTTGAGATGCTACTTTGGCAACTTTTCCTTGGAAAATATGAGTTGAATCAACTGAAAAGAAGCCAACTCCATTAAAGAGTCGTCTTCTCACATGTTGTATCAAGTTAATCGTTACTCCTTCAAGTGCTTCAGCAAGCTTTAGAGACTCAGCAATATGGTGTTCTACATTTTCTCAAACTGCTGAAATTTTGCTCGTGTAATTTTTTTGTAAAATAATGCTCCCTAAAAACCTTTGCTAAAATACCCTTATGTATATTGAAATTGAATGCAGATAATCTAACGTTGGCTGGAAGTTCAGTTACGCTACGCTCGAGAATTTCTCAAGTGCTACTTGGACTTGACGAAGAGTACAATCCTGTCATTGCGGTAATTCAAGGAAGATCCTCAATCAATTGGGCTAAGCTACAAGCTGAACTATTATCTTTTGAGAGGCATTTAGAGTTTCAGAATTCACAGAAAAGTGGAGCACCAATTATCTCAACTTCGACAGTCAATATGGCTAATACTCAAAATTTAGCTACTGGAAATCAGAAGAACAACATGGGCAATCAAGGGAATCAACATCATTTTAGCAATTTCAATTCGAGAGGTGGACGAAGCCGTGGCAGGGGGCGATGGAATGGAAATAATGGAAATAGTCGGCCCGTCTATCAGGTATGCAACAAAGTGGGTCATCTCGCCTCTGTATGTTATTTTCGCTTTGAGAAATAA

mRNA sequence

ATGAAGGAGATCTCCACTTCAATATTTGCAATATCAAGCTTCATGAGGAAGGAGAACAACTCAAGAAACATGAAGACACCAAACACGAGATCTCCAATTCTGAAACCCTCCACAAGTTTGGTCATCAAACTTGTGAAGGGTTTTGACTTTGAATTGGAAACGAGTCTCTCTATTGGAAGTTTTGACCCTCAAGATAATCTAACGTTGGCTGGAAGTTCAGTTACGCTACGCTCGAGAATTTCTCAAGTGCTACTTGGACTTGACGAAGAGTACAATCCTGTCATTGCGGTAATTCAAGGAAGATCCTCAATCAATTGGGCTAAGCTACAAGCTGAACTATTATCTTTTGAGAGGCATTTAGAGTTTCAGAATTCACAGAAAAGTGGAGCACCAATTATCTCAACTTCGACAGTCAATATGGCTAATACTCAAAATTTAGCTACTGGAAATCAGAAGAACAACATGGGCAATCAAGGGAATCAACATCATTTTAGCAATTTCAATTCGAGAGGTGGACGAAGCCGTGGCAGGGGGCGATGGAATGGAAATAATGGAAATAGTCGGCCCGTCTATCAGGTATGCAACAAAGTGGGTCATCTCGCCTCTGTATGTTATTTTCGCTTTGAGAAATAA

Coding sequence (CDS)

ATGAAGGAGATCTCCACTTCAATATTTGCAATATCAAGCTTCATGAGGAAGGAGAACAACTCAAGAAACATGAAGACACCAAACACGAGATCTCCAATTCTGAAACCCTCCACAAGTTTGGTCATCAAACTTGTGAAGGGTTTTGACTTTGAATTGGAAACGAGTCTCTCTATTGGAAGTTTTGACCCTCAAGATAATCTAACGTTGGCTGGAAGTTCAGTTACGCTACGCTCGAGAATTTCTCAAGTGCTACTTGGACTTGACGAAGAGTACAATCCTGTCATTGCGGTAATTCAAGGAAGATCCTCAATCAATTGGGCTAAGCTACAAGCTGAACTATTATCTTTTGAGAGGCATTTAGAGTTTCAGAATTCACAGAAAAGTGGAGCACCAATTATCTCAACTTCGACAGTCAATATGGCTAATACTCAAAATTTAGCTACTGGAAATCAGAAGAACAACATGGGCAATCAAGGGAATCAACATCATTTTAGCAATTTCAATTCGAGAGGTGGACGAAGCCGTGGCAGGGGGCGATGGAATGGAAATAATGGAAATAGTCGGCCCGTCTATCAGGTATGCAACAAAGTGGGTCATCTCGCCTCTGTATGTTATTTTCGCTTTGAGAAATAA

Protein sequence

MKEISTSIFAISSFMRKENNSRNMKTPNTRSPILKPSTSLVIKLVKGFDFELETSLSIGSFDPQDNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQNSQKSGAPIISTSTVNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNNGNSRPVYQVCNKVGHLASVCYFRFEK
Homology
BLAST of Lcy09g018830 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 71/146 (48.63%), Postives = 91/146 (62.33%), Query Frame = 0

Query: 65  DNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQN 124
           D L  AGS V  R+ ISQ LLGLDE YNPVIAVIQG+  I+W  +Q+ELL+FE+ LE Q+
Sbjct: 103 DKLGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQD 162

Query: 125 SQKSGAPIISTSTVNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNN 184
           +QK+   II  + VN+A  +N +   + +N    GN  + S    RGG + GRGR  G  
Sbjct: 163 TQKNTENIIQ-NVVNIAQNRNSSDFRKYSNHQFHGNNRNNSQ-GQRGGFNIGRGR--GKG 222

Query: 185 GNSRPVYQVCNKVGHLASVCYFRFEK 211
             ++P  QVC K GH A VCY RF K
Sbjct: 223 RGNKPTCQVCEKYGHSALVCYNRFNK 244

BLAST of Lcy09g018830 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 0

Query: 65  DNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQN 124
           DNL LAGSSV++R  +SQVL GLDEEYNP++  +QG+ +++W+++ AELL++E+ LE+QN
Sbjct: 180 DNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQN 239

Query: 125 SQKSGAPIISTST--VNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGR-GRWN 184
           S KSG PI  T T  VN  + ++  T  + NN    GN  H SN +  GG  RG  G+ N
Sbjct: 240 SLKSGIPINQTQTPSVNYVDGRSFQTNQRTNN----GNNSHGSNTHRGGGYQRGSFGQRN 299

Query: 185 GNNG 186
              G
Sbjct: 300 RGRG 299

BLAST of Lcy09g018830 vs. ExPASy TrEMBL
Match: A0A6J1DZR1 (uncharacterized protein LOC111025011 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025011 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.6e-17
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 87  LDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQNSQKSGAPIISTSTVNMANTQNL 146
           LDEEYNPVIA+I+GR+ I+ +++Q ELL FE+ LEFQNSQK+      T T+NMAN++  
Sbjct: 27  LDEEYNPVIAMIKGRAGISSSEIQVELLVFEKRLEFQNSQKNTVAFNHTPTLNMANSKYP 86

Query: 147 ATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNNGNSRPVYQVCNKVGHLASVC 205
             G +++   NQ N     N  S G R RGRG+WN N+ N R + QVC K GH   VC
Sbjct: 87  NRGQRQHLNNNQNN-----NQRSSGSRYRGRGKWNNNDVN-RQICQVCGKSGHSIFVC 138

BLAST of Lcy09g018830 vs. ExPASy TrEMBL
Match: A0A6J1DW60 (uncharacterized protein LOC111025011 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025011 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.6e-17
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 87  LDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQNSQKSGAPIISTSTVNMANTQNL 146
           LDEEYNPVIA+I+GR+ I+ +++Q ELL FE+ LEFQNSQK+      T T+NMAN++  
Sbjct: 27  LDEEYNPVIAMIKGRAGISSSEIQVELLVFEKRLEFQNSQKNTVAFNHTPTLNMANSKYP 86

Query: 147 ATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNNGNSRPVYQVCNKVGHLASVC 205
             G +++   NQ N     N  S G R RGRG+WN N+ N R + QVC K GH   VC
Sbjct: 87  NRGQRQHLNNNQNN-----NQRSSGSRYRGRGKWNNNDVN-RQICQVCGKSGHSIFVC 138

BLAST of Lcy09g018830 vs. ExPASy TrEMBL
Match: A0A5D3BWB6 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00030 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.6e-17
Identity = 69/193 (35.75%), Postives = 107/193 (55.44%), Query Frame = 0

Query: 18  ENNSRNMKTPNTRSPILKPSTSLVIKLVKGFDFELETSLSIGSFDPQDNLTLAGSSVTLR 77
           E++S + +T    +P  K    ++ K    F+ E +  + +    P + L  A S V  R
Sbjct: 34  ESSSTSTQTEEVVNPAFK--AWMLSKNSSAFNRERKKIVFV---KPFNKLEKADSLVPTR 93

Query: 78  SRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQNSQKSGAPIISTST 137
             ISQVLLGL EEYN V+A +QG+  ++  ++Q+ELL +E+ LE QN+ K+  P+ +T T
Sbjct: 94  ILISQVLLGLYEEYNAVVATLQGKPELSLVQMQSELLPYEKRLEAQNAHKT-VPLYNTRT 153

Query: 138 VNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNNGNSRPVYQVCNKV 197
           VNM + +   + +    +  +GN     N  + GG+S+ RGR     G  RP  QVC K+
Sbjct: 154 VNMVSNRG-PSNHSSRKVKVEGNNFSTGNRGNNGGQSKVRGR-----GRYRPTCQVCGKI 213

Query: 198 GHLASVCYFRFEK 211
           G++  VCY RF K
Sbjct: 214 GYITDVCYNRFNK 214

BLAST of Lcy09g018830 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-22
Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = 0

Query: 65  DNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQN 124
           DNL  AGS +  R+ +SQVLLGLDEEYN ++A+IQGR  ++W  +Q+ELL +ER LE Q+
Sbjct: 126 DNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQS 185

Query: 125 SQKS--GAPIISTSTVNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNG 184
           +QK+  G   IS ++VNM NT+++     +NN  N  NQ        RGG   GRGR  G
Sbjct: 186 NQKTTVGFNQISNASVNMTNTRHV----NQNNKTNSSNQS--IGGGQRGGGGHGRGRGRG 245

Query: 185 NNGNSRPVYQVCNKVGHLASVCYFRFEK 211
            N N +PV QVC KVGH+A  C+ R+ +
Sbjct: 246 RN-NKKPVCQVCGKVGHIAFYCFNRYSR 266

BLAST of Lcy09g018830 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-22
Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = 0

Query: 65  DNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQN 124
           DNL  AGS +  R+ +SQVLLGLDEEYN ++A+IQGR  ++W  +Q+ELL +ER LE Q+
Sbjct: 126 DNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQS 185

Query: 125 SQKS--GAPIISTSTVNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNG 184
           +QK+  G   IS ++VNM NT+++     +NN  N  NQ        RGG   GRGR  G
Sbjct: 186 NQKTTVGFNQISNASVNMTNTRHV----NQNNKTNSSNQS--IGGGQRGGGGHGRGRGRG 245

Query: 185 NNGNSRPVYQVCNKVGHLASVCYFRFEK 211
            N N +PV QVC KVGH+A  C+ R+ +
Sbjct: 246 RN-NKKPVCQVCGKVGHIAFYCFNRYSR 266

BLAST of Lcy09g018830 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-20
Identity = 71/146 (48.63%), Postives = 91/146 (62.33%), Query Frame = 0

Query: 65  DNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQN 124
           D L  AGS V  R+ ISQ LLGLDE YNPVIAVIQG+  I+W  +Q+ELL+FE+ LE Q+
Sbjct: 103 DKLGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQD 162

Query: 125 SQKSGAPIISTSTVNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNN 184
           +QK+   II  + VN+A  +N +   + +N    GN  + S    RGG + GRGR  G  
Sbjct: 163 TQKNTENIIQ-NVVNIAQNRNSSDFRKYSNHQFHGNNRNNSQ-GQRGGFNIGRGR--GKG 222

Query: 185 GNSRPVYQVCNKVGHLASVCYFRFEK 211
             ++P  QVC K GH A VCY RF K
Sbjct: 223 RGNKPTCQVCEKYGHSALVCYNRFNK 244

BLAST of Lcy09g018830 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-17
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 0

Query: 65  DNLTLAGSSVTLRSRISQVLLGLDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQN 124
           DNL LAGSSV++R  +SQVL GLDEEYNP++  +QG+ +++W+++ AELL++E+ LE+QN
Sbjct: 180 DNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQN 239

Query: 125 SQKSGAPIISTST--VNMANTQNLATGNQKNNMGNQGNQHHFSNFNSRGGRSRGR-GRWN 184
           S KSG PI  T T  VN  + ++  T  + NN    GN  H SN +  GG  RG  G+ N
Sbjct: 240 SLKSGIPINQTQTPSVNYVDGRSFQTNQRTNN----GNNSHGSNTHRGGGYQRGSFGQRN 299

Query: 185 GNNG 186
              G
Sbjct: 300 RGRG 299

BLAST of Lcy09g018830 vs. NCBI nr
Match: XP_022158550.1 (uncharacterized protein LOC111025011 isoform X2 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-16
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 87  LDEEYNPVIAVIQGRSSINWAKLQAELLSFERHLEFQNSQKSGAPIISTSTVNMANTQNL 146
           LDEEYNPVIA+I+GR+ I+ +++Q ELL FE+ LEFQNSQK+      T T+NMAN++  
Sbjct: 27  LDEEYNPVIAMIKGRAGISSSEIQVELLVFEKRLEFQNSQKNTVAFNHTPTLNMANSKYP 86

Query: 147 ATGNQKNNMGNQGNQHHFSNFNSRGGRSRGRGRWNGNNGNSRPVYQVCNKVGHLASVC 205
             G +++   NQ N     N  S G R RGRG+WN N+ N R + QVC K GH   VC
Sbjct: 87  NRGQRQHLNNNQNN-----NQRSSGSRYRGRGKWNNNDVN-RQICQVCGKSGHSIFVC 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C3731.9e-2048.63Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A6J1DCW41.5e-1747.58uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DZR15.6e-1750.00uncharacterized protein LOC111025011 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DW605.6e-1750.00uncharacterized protein LOC111025011 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A5D3BWB69.6e-1735.75Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
XP_038905164.11.4e-2247.97uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida][more]
XP_038905161.11.4e-2247.97uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida][more]
TYK05754.13.9e-2048.63Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_022151683.13.1e-1747.58uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_022158550.11.2e-1650.00uncharacterized protein LOC111025011 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g018830.1Lcy09g018830.1mRNA