Lcy09g018440 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g018440
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionOxysterol-binding protein-related protein 2A-like
LocationChr09: 40705961 .. 40709386 (+)
RNA-Seq ExpressionLcy09g018440
SyntenyLcy09g018440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTGAGTCTTCCTTTTTAGATGTGGTTCACGCAACCCTAAGAGAAAGAAATTGAAATTTTCTCCCTTCCAATGAATTTTCTCCCTCACCCTCGCTCTCTCTCTCTGTGTAAGATCATCACTGGCAGCCCGACGACGTCGCCACAGCCATGACGCCGAGTTTGCCGCCGCAGGAACGTTGTCGTTTCGCCGCACATCGCCGCAGTTGGTTGCGATTCCGAGCGTGGGTATTGTCACTGTTTTAATCGCCACTCAGTCCTTCCCCATCGTCGTCGGTGCAATCGCCATCCAGCTGCCAGCTGCCGCTGATTGTTTGTACAATAGAAAGTATCTCTATTCGCGTTGGTTTGGTCGAATCTGGTAAGATGTAATGCCTTATTGAAGTTTTAAGCAATTTCCTTAGGAATTAAAACTAACCCACATGTTCCCCATCTTGATTTTAGACTCTTGGTCATGTCCCCAATGATTGAATTCAAATATCGAGCAATCTAAGTTGCTGTCCAGCAAGAGAATTGTGATTTTGGTGAGTTTTTCTTCTCCGTTTAAGCCTCGTTAGCAATTATTTTTACTAATTAGAGTTGACCCATGATTGTTTGGATAAATTTCAGCATTTGCCATTAAATTTTGACACCGTATACACGTAGTTTCGCCCTAATGAAGTTTTGTCCAGCTACTGTCCGGATAGTTTTTAGTGAATTTCCAAGGGTAAAGGCCCTCCTTACACTAAATTGGGTTTAAATAAAATTATTGGATTAAGTTGTCTAATTTTGGAAAAGTCCTCGTGTGTACTTGTAGACATTTTTGCACAAGGACTAAGAGCATCATTGGATTAAGAATTTGAGTAAAATTCTTCTACATACTTGTAAGTGACTTTACTATTGAATTTTTATTGGGAGCTTGTATTGATCTTTTATTTGTGGGGTTTCTTTCTAGGTTTTGTTTTTTTTGTTTTTAGTTTGAGGATTTTGGAAATTTGTTCTTCAGGTTTTGGAAACAGAGGATTAGGCTTTGATGTTAGGTTTGAGTGAGGGGTTTTAATTTTGAGGGATTGAGAGTTTCTTTCTTTCAGGGTTTTGTTTGCTTGTGATTTTCTGTATGTGAATATTTTGTTTGGGGAATTGAATGGAAGACCGAGAGATATTGAAATAGAGTTAATGTTGCACAAGTTGTTTCTTTCAAATGCTAAAAAGAATATGGAAATAGTCTTCTTGTTTGATCATTTTATTTGAAGAGTATTTTTGCACGATCCCCTCCAAAATCGATGTTGGGTATTTAAGAAATTTACATTATGTAGTACACTATTAAAAATAAATTTTCAGATTGAGATAGAGCTATTTATGAAATGTTTATGTTGTGATAAATTTGACATTATATTCTTTATATATGTTTTATCACATTTTGTTAATTTTTTAAAATGATCTAATTAGGAATGTCAAAAGTTTAGGTATTTATTTAGTTGTATTGTATTTCATATGTGAGAAATGTCTAACTATATAAATAGGTGAGGACTATGTTATCTATTACCTCCTTCCTAGTTTCTCTTGTGACCTGTTCTGTTTAGTTTGGTAAGTTGAGATGACATTGTTGATATCTAAGTCATGTTTGGTTCATGGCTATGTTGGACATTTCCAAAATAAGGTTCTCAGAAATGTGTCGTGTTGTTTGTGTCGTATGGGAGAGTTTCTAGCAAGAAGAGTTAGAATGTATTCGTACCCCCCGCACCGCCAGTTTCTTCTTCACACAACCCTGTTTTCTTCTTCGCGCAAGCAACAGGAGTCGTCTCTCCATGCGACGCATGACCAACCACCGCAACGAAGCGTTTCGGCTTTTTTGGTAAGTTTAGCCTCGACCCACTCGATTTCTTCATTTTTCAGCTTATGCCCATGTAGTTTTAGACTTCAAAATTGTTCTAGATCATGACCCATGCTTATCTTTATATACATTGTATTGTCTATTTAATATTATCATCTCAGGACTTTTCTTACTCGCATGTATCCTAATGTCAGATATACTTGGGGCTAGCTCAATGCAGGGGTAATAGATAAACTAACCGAAAATGCATATACACATCTAACTGAATCTGATTTTTATGCTGAAGCGAATTTTTAAGTAGATTACTTCGTATAGGACATATGTGAAGGATTGATCTTTTAATTGTCGTAAGTGTCTAGATATATTTGGTTTTAACTTAGAAAAGGATTATATATAATCTAAGCATTACTTTTCTTTTCACTATGAGTTTGTCCATTGTGGCACAATGTCCTCATCTTCAGTGTTCGATGAGTCCAGCTAGGGTCAATAAATTGATTCTTGTATCAGTTCATATGGTTTAGTGGGTATATATGTATTATCATGTAACTAATGTGCCTGATAAGAGATTTTACCGTTTTATACTCAGGCTGCTAATTTTGAAGCTGAAGCTTTTGGAATGAATGATGGCGAATTTCAACTGACAAAGCATGATCTTTCCTCTAAAGAACATGGAAAATATAGTGGTTCTTTCTCTTCTCTTTTCTTCTCCTTATTTGATTGAACTCTGCTTTAAATATACTTATTTTCTCGTTGCAGCATGTGGTCTATGTTTGCTATAAATACATGTCAAAGTTTTCAACCAGAAGAAACTTGTGTTGGTTAAGATTTTGAAAATATAGTTTTTGTTTATTTTGACAATTATGCCAATTGAGATTTAGAAAACTATAAGATCTTGAATGATTCTTTGTCATATATATAAAAAAAAAAGATCTTGAAGGATGAGGAAAGAACCTTTGATAGTGTTTCTTTTAACCCTCTTTCTCTTTGTAGCCCTCTCTTATTGCTAAAATGCCCCTCTTTCACAATTGTAGTACGAGGATCAACCGGGGAAGTTTTTTTTTTATTTATTTATTTGTAATCTCCTTTTGTTTGGGGTTTGGCTTTCCTTTTTTTCTTTTCTTCGTAATTTCATCATATGCATGGAATTGTTTCTTCTCAGACAGATTCAGTAAATTATGTTGGGTCTTCCTAGCTCTCTATTTTCATTAACACTAAAAAGATATGGTTTCATGTCTTTTGGGTTTTTAAACTATAAGATGTGATTTTGAAAGTTTATGCTGGTTAAGTTGATAGATGCTGATTTTTACTTCTAAATCATAAATTGGTAAACTTCTTGTCTCAACAATATGTTGATTTATTACACGTGTTGAATTATATATGTAGTGTGTTCAACAATCGGGATCTACGGAGTGTGGATATTACATAGTATCCCATAGGAGCAGAGTGATTACAGATGTGGTACTAATCGATTTAGCCTTGTATTCAACTTAATCTTTTATATTTATTATAATTTTTGTAATGTAGTATGTTTACTTAATTTTTTTTTGTTTGCAGTTGACGAGAGGAAATGCATTTAGCCAATCAGAATTCGATGAGATAAGAGTTGAATTATG

mRNA sequence

AAAGTTGAGTCTTCCTTTTTAGATGTGGTTCACGCAACCCTAAGAGAAAGAAATTGAAATTTTCTCCCTTCCAATGAATTTTCTCCCTCACCCTCGCTCTCTCTCTCTGTGTAAGATCATCACTGGCAGCCCGACGACGTCGCCACAGCCATGACGCCGAGTTTGCCGCCGCAGGAACGTTGTCGTTTCGCCGCACATCGCCGCAGTTGGTTGCGATTCCGAGCGTGGGTATTGTCACTGTTTTAATCGCCACTCAGTCCTTCCCCATCGTCGTCGGTGCAATCGCCATCCAGCTGCCAGCTGCCGCTGATTGTTTGTACAATAGAAAGTATCTCTATTCGCGTTGGTTTGGTCGAATCTGACTCTTGGTCATGTCCCCAATGATTGAATTCAAATATCGAGCAATCTAAGTTGCTGTCCAGCAAGAGAATTGTGATTTTGGTGAGTTTTTCTTCTCCGTTTAAGCCTCGTTAGCAATTATTTTTACTAATTAGAGTTGACCCATGATTGTTTGGATAAATTTCAGCATTTGCCATTAAATTTTGACACCGTATACACGTAGTTTCGCCCTAATGAAGTTTTGTCCAGCTACTGTCCGGATAGTTTTTAGTGAATTTCCAAGGGTAAAGGCCCTCCTTACACTAAATTGGGTTTAAATAAAATTATTGGATTAAGTTGTCTAATTTTGGAAAAGTCCTCGTGTGTACTTGTAGACATTTTTGCACAAGGACTAAGAGCATCATTGGATTAAGAATTTGAGTAAAATTCTTCTACATACTTGTAAGTGACTTTACTATTGAATTTTTATTGGGAGCTTGTATTGATCTTTTATTTGTGGGGTTTCTTTCTAGGTTTTGTTTTTTTTGTTTTTAGTTTGAGGATTTTGGAAATTTGTTCTTCAGGTTTTGGAAACAGAGGATTAGGCTTTGATGTTAGGTTTGAGTGAGGGGTTTTAATTTTGAGGGATTGAGAGTTTCTTTCTTTCAGGGTTTTGTTTGCTTGTGATTTTCTGTATGTGAATATTTTGTTTGGGGAATTGAATGGAAGACCGAGAGATATTGAAATAGAGTTAATGTTGCACAAGTTGTTTCTTTCAAATGCTAAAAAGAATATGGAAATAGTCTTCTTGTTTGATCATTTTATTTGAAGAGTATTTTTGCACGATCCCCTCCAAAATCGATGTTGGGTATTTAAGAAATTTACATTATGTAGTACACTATTAAAAATAAATTTTCAGATTGAGATAGAGCTATTTATGAAATGTTTATGTTGTGATAAATTTGACATTATATTCTTTATATATGTTTTATCACATTTTGTTAATTTTTTAAAATGATCTAATTAGGAATGTCAAAAGTTTAGGTATTTATTTAGTTGTATTGTATTTCATATGTGAGAAATGTCTAACTATATAAATAGGTGAGGACTATGTTATCTATTACCTCCTTCCTAGTTTCTCTTGTGACCTGTTCTGTTTAGTTTGGTAAGTTGAGATGACATTGTTGATATCTAAGTCATGTTTGGTTCATGGCTATGTTGGACATTTCCAAAATAAGGTTCTCAGAAATGTGTCGTGTTGTTTGTGTCGTATGGGAGAGTTTCTAGCAAGAAGAGTTAGAATGTATTCGTACCCCCCGCACCGCCAGTTTCTTCTTCACACAACCCTGTTTTCTTCTTCGCGCAAGCAACAGGAGTCGTCTCTCCATGCGACGCATGACCAACCACCGCAACGAAGCGTTTCGGCTTTTTTGGCTGCTAATTTTGAAGCTGAAGCTTTTGGAATGAATGATGGCGAATTTCAACTGACAAAGCATGATCTTTCCTCTAAAGAACATGGAAAATATAGTGTGTGTTCAACAATCGGGATCTACGGAGTGTGGATATTACATAGTATCCCATAGGAGCAGAGTGATTACAGATGTGTTGACGAGAGGAAATGCATTTAGCCAATCAGAATTCGATGAGATAAGAGTTGAATTATG

Coding sequence (CDS)

ATGACATTGTTGATATCTAAGTCATGTTTGGTTCATGGCTATGTTGGACATTTCCAAAATAAGGTTCTCAGAAATGTGTCGTGTTGTTTGTGTCGTATGGGAGAGTTTCTAGCAAGAAGAGTTAGAATGTATTCGTACCCCCCGCACCGCCAGTTTCTTCTTCACACAACCCTGTTTTCTTCTTCGCGCAAGCAACAGGAGTCGTCTCTCCATGCGACGCATGACCAACCACCGCAACGAAGCGTTTCGGCTTTTTTGGCTGCTAATTTTGAAGCTGAAGCTTTTGGAATGAATGATGGCGAATTTCAACTGACAAAGCATGATCTTTCCTCTAAAGAACATGGAAAATATAGTGTGTGTTCAACAATCGGGATCTACGGAGTGTGGATATTACATAGTATCCCATAG

Protein sequence

MTLLISKSCLVHGYVGHFQNKVLRNVSCCLCRMGEFLARRVRMYSYPPHRQFLLHTTLFSSSRKQQESSLHATHDQPPQRSVSAFLAANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCSTIGIYGVWILHSIP
Homology
[Close]
BLAST of Lcy09g018440 vs. ExPASy TrEMBL
Match: A0A6J1HXK4 (oxysterol-binding protein-related protein 2A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468951 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. ExPASy TrEMBL
Match: A0A6J1E666 (oxysterol-binding protein-related protein 2A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430320 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. ExPASy TrEMBL
Match: A0A6J1I3Y9 (oxysterol-binding protein-related protein 2A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468951 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. ExPASy TrEMBL
Match: A0A6J1E8B5 (oxysterol-binding protein-related protein 2A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430320 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. ExPASy TrEMBL
Match: A0A1S3ATD7 (oxysterol-binding protein-related protein 2B-like OS=Cucumis melo OX=3656 GN=LOC103482633 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AA+FEAEA G NDGEFQL KHDLSS+EHGKYS CST
Sbjct: 274 AASFEAEASGTNDGEFQLAKHDLSSEEHGKYSECST 309

[Close]
BLAST of Lcy09g018440 vs. NCBI nr
Match: XP_023550323.1 (oxysterol-binding protein-related protein 2A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. NCBI nr
Match: XP_022922300.1 (oxysterol-binding protein-related protein 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. NCBI nr
Match: KAG7016899.1 (Oxysterol-binding protein-related protein 2A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 121 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 156

[Close]
BLAST of Lcy09g018440 vs. NCBI nr
Match: XP_022922298.1 (oxysterol-binding protein-related protein 2A-like isoform X1 [Cucurbita moschata] >XP_022922299.1 oxysterol-binding protein-related protein 2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 268 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 303

[Close]
BLAST of Lcy09g018440 vs. NCBI nr
Match: KAG6579421.1 (Oxysterol-binding protein-related protein 2A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 87  AANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AANFEAEA GMNDGEFQLTKHDLSS+E GKYS CST
Sbjct: 263 AANFEAEASGMNDGEFQLTKHDLSSEERGKYSECST 298

[Close]
BLAST of Lcy09g018440 vs. TAIR 10
Match: AT4G12460.1 (OSBP(oxysterol binding protein)-related protein 2B )

HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 20/35 (57.14%), Postives = 23/35 (65.71%), Query Frame = 0 

Query: 88  ANFEAEAFGMNDGEFQLTKHDLSSKEHGKYSVCST 123
           AN EAEA G++D  +QL  H  SS   GKYS CST
Sbjct: 232 ANLEAEASGIHDDVYQLRNHKYSSLGRGKYSECST 266

The following BLAST results are available for this feature:
BLAST of Lcy09g018440 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g018440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HXK42.3e-0888.89oxysterol-binding protein-related protein 2A-like isoform X1 OS=Cucurbita maxima... [more]
A0A6J1E6662.3e-0888.89oxysterol-binding protein-related protein 2A-like isoform X1 OS=Cucurbita moscha... [more]
A0A6J1I3Y92.3e-0888.89oxysterol-binding protein-related protein 2A-like isoform X2 OS=Cucurbita maxima... [more]
A0A6J1E8B52.3e-0888.89oxysterol-binding protein-related protein 2A-like isoform X2 OS=Cucurbita moscha... [more]
A0A1S3ATD72.0e-0783.33oxysterol-binding protein-related protein 2B-like OS=Cucumis melo OX=3656 GN=LOC... [more]
BLAST of Lcy09g018440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023550323.14.9e-0888.89oxysterol-binding protein-related protein 2A-like isoform X2 [Cucurbita pepo sub... [more]
XP_022922300.14.9e-0888.89oxysterol-binding protein-related protein 2A-like isoform X2 [Cucurbita moschata... [more]
KAG7016899.14.9e-0888.89Oxysterol-binding protein-related protein 2A [Cucurbita argyrosperma subsp. argy... [more]
XP_022922298.14.9e-0888.89oxysterol-binding protein-related protein 2A-like isoform X1 [Cucurbita moschata... [more]
KAG6579421.14.9e-0888.89Oxysterol-binding protein-related protein 2A, partial [Cucurbita argyrosperma su... [more]
BLAST of Lcy09g018440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G12460.14.5e-0457.14OSBP(oxysterol binding protein)-related protein 2B [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g018440.1Lcy09g018440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
molecular_function GO:0008289 lipid binding