Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTGAGGTAGAGAGGGGTATTTCACAAAATAAGGTGGACTTGAATGAAAAAACGTGTAGTTGTAGATCATGGGATTTAACAGGCATACCATGTGTTCATGCTATACAAAGTATATATTATCTTAAAAAAAAACCTGAGGAGTTTGTACACAAGTCTTACCATAAGCAGACATTGGTGAATGTTTACTCCTACTTCATCAAACCGGTCAATGGTCACCCTTTATGGCCAAGAACCACATTAGAACCGCTGCTACCACCTAAGATTCGGAGGCCCCCTGGCAGGCCGAAGAGGCAGAGAAGAAGAGATGTTGATGAAGTTGCACCGTCACATAAGAAGCAACACATTCAAGTTGTTACTAAGTGTAGTCGATGTAAAGGTACAGGACATAATGCCAGATCTTGTAGGGGGCCAATAGCACGAAGTTCAACAAGGCGTAGGAAAGATAGAACCTTCATGGGATTGAACATTCCTATTAATGTAAGTGTGACTTCACCTCGTGTTCATTCACCTTATTTTCATTCGCCTTGTGTTCATTCACTACTTTTGTTTGTAGGAGATTGAAACTGGAGCTACTACTGACGCAATGACACTTGAAGATGGTAGACAAAACAATGAAGGTGAAACACAGAGGAACGAAAGAAATATTGGAACCCAACAATCTACAAATCAACCATAG
mRNA sequence
ATGATGTTTGAGGTAGAGAGGGGTATTTCACAAAATAAGGTGGACTTGAATGAAAAAACGTGTAGTTGTAGATCATGGGATTTAACAGGCATACCATGTGTTCATGCTATACAAAGTATATATTATCTTAAAAAAAAACCTGAGGAGTTTGTACACAAGTCTTACCATAAGCAGACATTGGTGAATGTTTACTCCTACTTCATCAAACCGGTCAATGGTCACCCTTTATGGCCAAGAACCACATTAGAACCGCTGCTACCACCTAAGATTCGGAGGCCCCCTGGCAGGCCGAAGAGGCAGAGAAGAAGAGATGTTGATGAAGTTGCACCGTCACATAAGAAGCAACACATTCAAGTTGTTACTAAGTGTAGTCGATGTAAAGGTACAGGACATAATGCCAGATCTTGTAGGGGGCCAATAGCACGAAGTTCAACAAGGCGTAGGAAAGATAGAACCTTCATGGGATTGAACATTCCTATTAATGAGATTGAAACTGGAGCTACTACTGACGCAATGACACTTGAAGATGGTAGACAAAACAATGAAGGTGAAACACAGAGGAACGAAAGAAATATTGGAACCCAACAATCTACAAATCAACCATAG
Coding sequence (CDS)
ATGATGTTTGAGGTAGAGAGGGGTATTTCACAAAATAAGGTGGACTTGAATGAAAAAACGTGTAGTTGTAGATCATGGGATTTAACAGGCATACCATGTGTTCATGCTATACAAAGTATATATTATCTTAAAAAAAAACCTGAGGAGTTTGTACACAAGTCTTACCATAAGCAGACATTGGTGAATGTTTACTCCTACTTCATCAAACCGGTCAATGGTCACCCTTTATGGCCAAGAACCACATTAGAACCGCTGCTACCACCTAAGATTCGGAGGCCCCCTGGCAGGCCGAAGAGGCAGAGAAGAAGAGATGTTGATGAAGTTGCACCGTCACATAAGAAGCAACACATTCAAGTTGTTACTAAGTGTAGTCGATGTAAAGGTACAGGACATAATGCCAGATCTTGTAGGGGGCCAATAGCACGAAGTTCAACAAGGCGTAGGAAAGATAGAACCTTCATGGGATTGAACATTCCTATTAATGAGATTGAAACTGGAGCTACTACTGACGCAATGACACTTGAAGATGGTAGACAAAACAATGAAGGTGAAACACAGAGGAACGAAAGAAATATTGGAACCCAACAATCTACAAATCAACCATAG
Protein sequence
MMFEVERGISQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLVNVYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVVTKCSRCKGTGHNARSCRGPIARSSTRRRKDRTFMGLNIPINEIETGATTDAMTLEDGRQNNEGETQRNERNIGTQQSTNQP
Homology
BLAST of Lcy09g017630 vs. ExPASy TrEMBL
Match:
A0A396J0S1 (Putative transcription factor interactor and regulator CCHC(Zn) family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0278781 PE=4 SV=1)
HSP 1 Score: 143.7 bits (361), Expect = 8.6e-31
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 0
Query: 3 FEVERGISQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLVN 62
F V G +++ E+TCSCR W+L+GIPC HA+ +IYY + P+E+V Y KQT ++
Sbjct: 39 FSVSDGSDMYVINVKERTCSCRRWELSGIPCPHAVAAIYYNSQNPDEYVAHWYRKQTFLD 98
Query: 63 VYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDE--VAPSHKKQHIQVV 122
Y FI P NG LWP L P+LPP +RR PGRPK+ RR+D DE S K + Q
Sbjct: 99 TYDNFIMPSNGPKLWPEVNLPPILPPPVRRAPGRPKKLRRKDNDEPKSTTSKKGKRNQET 158
Query: 123 TKCSRCKGTGHNARSCRGPIA 142
+C+RCK GHN R+C+G A
Sbjct: 159 MRCTRCKELGHNMRTCKGKTA 179
BLAST of Lcy09g017630 vs. ExPASy TrEMBL
Match:
A0A6P8DW92 (uncharacterized protein LOC116208272 OS=Punica granatum OX=22663 GN=LOC116208272 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 0
Query: 10 SQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLVNVYSYFIK 69
S+ VDL TCSCR WDL GIPC+HA+ I + KPE+FVH Y + T +Y +FIK
Sbjct: 12 SKCAVDLQMHTCSCREWDLIGIPCMHAVACIGFNNLKPEDFVHPWYSRSTHEQLYGFFIK 71
Query: 70 PVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVVTKCSRCKGT 129
P G W ++ +P+ PPK++RPPGRPK+QR++ +E +K + C +C G+
Sbjct: 72 PTAGEEYWTKSNEDPVQPPKLKRPPGRPKKQRKKGAEEPKDPYKLKRSLGPIVCGKCGGS 131
Query: 130 GHNARSCRGP-IARSSTRRRKDRTFMGLNIPINEIETGATTDAMTLEDG 178
HN R+C+GP IA SS ++ K+ + +PI T A+ D G
Sbjct: 132 KHNIRTCKGPSIASSSKKKEKNSSRKSNVVPIGTNSTVASADGTNSTQG 180
BLAST of Lcy09g017630 vs. ExPASy TrEMBL
Match:
A0A2K3MIG9 (Sucrose-phosphate synthase-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g046701 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 6.1e-29
Identity = 84/208 (40.38%), Postives = 111/208 (53.37%), Query Frame = 0
Query: 2 MFEVERGISQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLV 61
+F V GI Q V+L EKTC+CR W+L+GIPCVHAI +++ KPE+FV Y K T V
Sbjct: 9 IFSVSNGIDQYVVNLVEKTCACRRWELSGIPCVHAISCLWFNNTKPEDFVAHWYRKTTFV 68
Query: 62 NVYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVVT 121
+ Y+ I P NG LWP P+ PP +RR PGRPK+ RR+ DE P K+ I VT
Sbjct: 69 DCYNNIILPNNGPKLWPNVEGLPIQPPYVRRAPGRPKKARRKANDEPNPKRMKKVIGTVT 128
Query: 122 KCSRCKGTGHNARSCRGPIA----------RSSTRRRKDRTFMGLNIPINEIETGATTDA 181
C+RCK GHN RSC+G A +S+T + G+N +TGA +
Sbjct: 129 -CNRCKRVGHNKRSCKGKTAADRVIPIGGNKSNTSIKHPEAQTGVNY---TAQTGAQSAK 188
Query: 182 MTLEDGRQNNEGETQRNERNIGTQQSTN 200
T + G N +T +Q N
Sbjct: 189 NTAQSG-VNTTAQTSAQSAKNASQTGVN 211
BLAST of Lcy09g017630 vs. ExPASy TrEMBL
Match:
A0A1S3U0L8 (uncharacterized protein LOC106760657 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760657 PE=4 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 0
Query: 3 FEVERGISQNK--VDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTL 62
FEV G + +K VD++ +CSC W+L GIPC HA+ +I+Y + PE++VH Y KQ
Sbjct: 318 FEVTHGFTMDKFVVDVSNHSCSCYFWNLVGIPCRHAVFTIHYKLENPEDYVHPYYKKQAY 377
Query: 63 VNVYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVV 122
Y+ I P+NG LWPR+ EPLLPP ++PPGRPK+ RRR+ DE K +
Sbjct: 378 QTCYAPEIIPINGQQLWPRSEAEPLLPPTYKKPPGRPKKLRRREADEYVSHSKLSKKNIG 437
Query: 123 TKCSRCKGTGHNARSCR 138
KCS C GHN RSC+
Sbjct: 438 MKCSSCHAYGHNVRSCK 454
BLAST of Lcy09g017630 vs. ExPASy TrEMBL
Match:
A0A1S3U0L5 (uncharacterized protein LOC106760651 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760651 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = 0
Query: 3 FEVERGISQNK--VDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTL 62
FEV G + +K VD++ +CSC WDL GIPC HA+ +I+Y + PE++VH Y K+
Sbjct: 336 FEVTHGFTMDKFVVDVSNHSCSCYFWDLVGIPCRHAVAAIHYKLENPEDYVHPYYKKEAY 395
Query: 63 VNVYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVV 122
Y+ I P+NG LWPR+ EPLLPP + PPGRPK+ RRR+ DE K +
Sbjct: 396 QTCYAPQIIPINGQQLWPRSETEPLLPPIYKTPPGRPKKLRRREADEYVSHSKLSKKNIG 455
Query: 123 TKCSRCKGTGHNARSCR 138
KCS C GHN RSC+
Sbjct: 456 MKCSSCHAYGHNVRSCK 472
BLAST of Lcy09g017630 vs. NCBI nr
Match:
RHN71616.1 (putative transcription factor interactor and regulator CCHC(Zn) family [Medicago truncatula])
HSP 1 Score: 143.7 bits (361), Expect = 1.8e-30
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 0
Query: 3 FEVERGISQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLVN 62
F V G +++ E+TCSCR W+L+GIPC HA+ +IYY + P+E+V Y KQT ++
Sbjct: 39 FSVSDGSDMYVINVKERTCSCRRWELSGIPCPHAVAAIYYNSQNPDEYVAHWYRKQTFLD 98
Query: 63 VYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDE--VAPSHKKQHIQVV 122
Y FI P NG LWP L P+LPP +RR PGRPK+ RR+D DE S K + Q
Sbjct: 99 TYDNFIMPSNGPKLWPEVNLPPILPPPVRRAPGRPKKLRRKDNDEPKSTTSKKGKRNQET 158
Query: 123 TKCSRCKGTGHNARSCRGPIA 142
+C+RCK GHN R+C+G A
Sbjct: 159 MRCTRCKELGHNMRTCKGKTA 179
BLAST of Lcy09g017630 vs. NCBI nr
Match:
XP_039690759.1 (uncharacterized protein LOC120580713 [Medicago truncatula])
HSP 1 Score: 139.0 bits (349), Expect = 4.4e-29
Identity = 77/195 (39.49%), Postives = 104/195 (53.33%), Query Frame = 0
Query: 2 MFEVERGISQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLV 61
MF V G V+L +KTC+CR WDL+GIPC HAI IYY + +++V Y KQ +
Sbjct: 155 MFSVTDGTDTYAVNLKDKTCACRKWDLSGIPCPHAIAGIYYNQANVDDYVAHWYRKQKFL 214
Query: 62 NVYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKK-QHIQVV 121
+ Y + I P NG LWP EP+LPP RR PGRPK+ RR++ DE + KK + QV
Sbjct: 215 DTYDHLILPSNGPKLWPEVNTEPILPPGARRAPGRPKKARRKENDEPKTASKKGKRNQVT 274
Query: 122 TKCSRCKGTGHNARSCRGPIARSSTRRRKDRTFMGLNIPI---NEIETGATTDAMTLEDG 181
+C RCK GHN R+C G +T IP+ +I T + + + G
Sbjct: 275 LRCRRCKELGHNTRTCGG------------KTGADRRIPVGGNKDITTQSAQTGIDAQAG 334
Query: 182 RQNNEGETQRNERNI 193
+ NN Q N N+
Sbjct: 335 QPNNNESAQANTSNV 337
BLAST of Lcy09g017630 vs. NCBI nr
Match:
XP_031397476.1 (uncharacterized protein LOC116208272 [Punica granatum])
HSP 1 Score: 139.0 bits (349), Expect = 4.4e-29
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 0
Query: 10 SQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLVNVYSYFIK 69
S+ VDL TCSCR WDL GIPC+HA+ I + KPE+FVH Y + T +Y +FIK
Sbjct: 12 SKCAVDLQMHTCSCREWDLIGIPCMHAVACIGFNNLKPEDFVHPWYSRSTHEQLYGFFIK 71
Query: 70 PVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVVTKCSRCKGT 129
P G W ++ +P+ PPK++RPPGRPK+QR++ +E +K + C +C G+
Sbjct: 72 PTAGEEYWTKSNEDPVQPPKLKRPPGRPKKQRKKGAEEPKDPYKLKRSLGPIVCGKCGGS 131
Query: 130 GHNARSCRGP-IARSSTRRRKDRTFMGLNIPINEIETGATTDAMTLEDG 178
HN R+C+GP IA SS ++ K+ + +PI T A+ D G
Sbjct: 132 KHNIRTCKGPSIASSSKKKEKNSSRKSNVVPIGTNSTVASADGTNSTQG 180
BLAST of Lcy09g017630 vs. NCBI nr
Match:
PNX90576.1 (sucrose-phosphate synthase-like protein, partial [Trifolium pratense])
HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 84/208 (40.38%), Postives = 111/208 (53.37%), Query Frame = 0
Query: 2 MFEVERGISQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLV 61
+F V GI Q V+L EKTC+CR W+L+GIPCVHAI +++ KPE+FV Y K T V
Sbjct: 9 IFSVSNGIDQYVVNLVEKTCACRRWELSGIPCVHAISCLWFNNTKPEDFVAHWYRKTTFV 68
Query: 62 NVYSYFIKPVNGHPLWPRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVVT 121
+ Y+ I P NG LWP P+ PP +RR PGRPK+ RR+ DE P K+ I VT
Sbjct: 69 DCYNNIILPNNGPKLWPNVEGLPIQPPYVRRAPGRPKKARRKANDEPNPKRMKKVIGTVT 128
Query: 122 KCSRCKGTGHNARSCRGPIA----------RSSTRRRKDRTFMGLNIPINEIETGATTDA 181
C+RCK GHN RSC+G A +S+T + G+N +TGA +
Sbjct: 129 -CNRCKRVGHNKRSCKGKTAADRVIPIGGNKSNTSIKHPEAQTGVNY---TAQTGAQSAK 188
Query: 182 MTLEDGRQNNEGETQRNERNIGTQQSTN 200
T + G N +T +Q N
Sbjct: 189 NTAQSG-VNTTAQTSAQSAKNASQTGVN 211
BLAST of Lcy09g017630 vs. NCBI nr
Match:
KAG8481389.1 (hypothetical protein CXB51_026139 [Gossypium anomalum])
HSP 1 Score: 137.1 bits (344), Expect = 1.7e-28
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 0
Query: 3 FEVERGI-SQNKVDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLV 62
++VE G SQ+ VDL E +CSCR+WDLTGIPC+HA+ I+ ++ PE +V Y KQT +
Sbjct: 508 YQVECGPGSQHVVDLVENSCSCRNWDLTGIPCMHALAVIHLKEEFPETYVQTWYTKQTQL 567
Query: 63 NVYSYFIKPVNGHPLW-PRTTLEPLLPPKIRRPPGRPKRQRRRDVDEVAPSHKKQHIQVV 122
+YS F+ PV G W P + + P+LPP +RRPPGRP + RR++ DE + + V
Sbjct: 568 QIYSNFVSPVRGPKQWAPLSNMLPILPPPLRRPPGRPTKVRRKEPDEPQTTERLSKRGVE 627
Query: 123 TKCSRCKGTGHNARSCRGPIARSSTRRRKDRTFMGLNIPINEIETGATT 170
+CS+CK GHN RSC+G + G NIP+ + G T
Sbjct: 628 IRCSKCKIVGHNRRSCKGEV--------------GQNIPVKRHKVGVPT 662
BLAST of Lcy09g017630 vs. TAIR 10
Match:
AT1G64260.1 (MuDR family transposase )
HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 26/82 (31.71%), Postives = 36/82 (43.90%), Query Frame = 0
Query: 14 VDLNEKTCSCRSWDLTGIPCVHAIQSIYYLKKKPEEFVHKSYHKQTLVNVYSYFIKPVNG 73
V LN TC+CR + PC+HA+ LK P ++V + Y + Y+ PV
Sbjct: 636 VQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPD 695
Query: 74 HPLWPRTTLEP-LLPPKIRRPP 95
WP P L PP + P
Sbjct: 696 VAAWPEDCRVPTLFPPSQQLSP 717
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A396J0S1 | 8.6e-31 | 47.52 | Putative transcription factor interactor and regulator CCHC(Zn) family OS=Medica... | [more] |
A0A6P8DW92 | 2.1e-29 | 40.83 | uncharacterized protein LOC116208272 OS=Punica granatum OX=22663 GN=LOC116208272... | [more] |
A0A2K3MIG9 | 6.1e-29 | 40.38 | Sucrose-phosphate synthase-like protein (Fragment) OS=Trifolium pratense OX=5757... | [more] |
A0A1S3U0L8 | 2.3e-28 | 46.72 | uncharacterized protein LOC106760657 OS=Vigna radiata var. radiata OX=3916 GN=LO... | [more] |
A0A1S3U0L5 | 3.0e-28 | 46.72 | uncharacterized protein LOC106760651 OS=Vigna radiata var. radiata OX=3916 GN=LO... | [more] |
Match Name | E-value | Identity | Description | |
RHN71616.1 | 1.8e-30 | 47.52 | putative transcription factor interactor and regulator CCHC(Zn) family [Medicago... | [more] |
XP_039690759.1 | 4.4e-29 | 39.49 | uncharacterized protein LOC120580713 [Medicago truncatula] | [more] |
XP_031397476.1 | 4.4e-29 | 40.83 | uncharacterized protein LOC116208272 [Punica granatum] | [more] |
PNX90576.1 | 1.3e-28 | 40.38 | sucrose-phosphate synthase-like protein, partial [Trifolium pratense] | [more] |
KAG8481389.1 | 1.7e-28 | 42.60 | hypothetical protein CXB51_026139 [Gossypium anomalum] | [more] |
Match Name | E-value | Identity | Description | |
AT1G64260.1 | 1.6e-05 | 31.71 | MuDR family transposase | [more] |