Lcy09g017230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g017230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr09: 33271485 .. 33272945 (-)
RNA-Seq Expression	Lcy09g017230
Synteny	Lcy09g017230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAACAAGAATGTGGACCCATCAAAAGCAGAGGACCTGAGTAAAATCTTGGGTATAGAGAAATCAGAAGAGTTGGGCTACTATATGGGGATGCCATCCCAAACAGGCAGGAACAAGAACAAAATTTTCAAAAATATCAAGGAAAGAATATGGAAGGCTCTCCAACAATGGAAAATTCCATTATTCTCGGTAGGTGGCAAAGAGGTTCTTATACAATCAATTGTCCAGGCTATTCCGACATACACAATGAGCTGTTTTAGACTCCCAAGCTCCCTTTGTGAAGAGATCAACAAGGCTTGTGCTAACTTTTGGTGGGGAGAGAACAATGGATCTAAAAGAGCTCATTCAGTTAGATGGAAAAATCTCTGTATTAGCAAGGACAGGGGAGGCTTAGGCTTTAGAGACTTAAATCGTTTTAATCAAGCCATGCTCGCGAAAAGTTAGCTGGAGGATTATCAAAAATCCAAATAGCCTCCTCACTCAAGTGCTCAAAGGGAAATACTTCAAGGCGGGTGATTTTCTTTCAGCCGAGTTGGAAAGGAATCCGTCCCTAACTTGGAGGAGTATCATTTTGGGAAGAGAGCTATTTAAAAAAGGATATAGATGGAGAATTGAGAATGGTAATCGAGTGTGTATTGATAAAGACCCGTGGAAAATTTTCCTGCCCCTAACTAAGGACCTTTTTTTCTTGGACAGATCCTCTTGGGCTCTTGAGCATTACTGGCAATGGATATCAGAAAACTTAGAAAGCGAAGAGTTAGAAAGAGCTATTATTATTCTATGGAGCATTTGGAACCATAGGAATGCTGTTCTCCAAAAAGAAGTTAGACCAGACAACAATCTCATTATCAGTAGCATAGAGCGCAACATCAATCAATAAAGGAAAGCCGACCAAACTCACCAAATTATATCGAATATTCAGAAGCCCGATTGCCCGAAGAGCCTCACGAACCACGCTGATTGGATCCCCCGTCGGAAAATGTATGGAAGCTTAATGTGGATGTCTCCAAATTCGAGAACCTGAACAACGGAGGAGTAGGCTGGATCCTTTGTGACTCCTCAGGATCTTCGATTTGCATGGGCTTCAAGAAGATTAAGAAAAATTGGTCAGTGAAAGTGTTCGAACTGAAAGCGATTTTGGAAGGAATCAATTGCCTACCTTCCCTGAAAGCGTCCCATCCTGATTTGGCCATCCCTCTTATTGTAGTTGAATCGAATGCAGCTGGTGTAGTCAATCTCCTCAACAAGGAAACATTTCTCGCAGAAGAGATTTTTCAGCTAAAAGAAGAAATTGGAGACATTAGTTTTGATTTTTGTCCGAGATCAACAAATGGTGCGGCCCATCGTTTGGCGCGAATCGCCATCTCCCCTCCCCTGATTTTAGTTGTTCTGTTTTTTACTCTTCTTCTACTTCAGAAGAAGAAGGCTTTTGGATTGGGCCCCTGGGCTATTAAATGA

mRNA sequence

ATGGTCAACAAGAATGTGGACCCATCAAAAGCAGAGGACCTGAGTAAAATCTTGGGTATAGAGAAATCAGAAGAGTTGGGCTACTATATGGGGATGCCATCCCAAACAGGCAGGAACAAGAACAAAATTTTCAAAAATATCAAGGAAAGAATATGGAAGGCTCTCCAACAATGGAAAATTCCATTATTCTCGGTAGGTGGCAAAGAGGTTCTTATACAATCAATTGTCCAGGCTATTCCGACATACACAATGAGCTGTTTTAGACTCCCAAGCTCCCTTTGTGAAGAGATCAACAAGGCTTGTGCTAACTTTTGGTGGGGAGAGAACAATGGATCTAAAAGAGCTCATTCAGTTAGATGGAAAAATCTCTGTATTAGCAAGGACAGGGGAGGCTTAGGCTTTAGAGACTTAAATCGTTTTAATCAAGCCATGCTCGCGAAAAGATCTTCGATTTGCATGGGCTTCAAGAAGATTAAGAAAAATTGGTCAGTGAAAGTGTTCGAACTGAAAGCGATTTTGGAAGGAATCAATTGCCTACCTTCCCTGAAAGCGTCCCATCCTGATTTGGCCATCCCTCTTATTGTAGTTGAATCGAATGCAGCTGGTGTAGTCAATCTCCTCAACAAGGAAACATTTCTCGCAGAAGAGATTTTTCAGCTAAAAGAAGAAATTGGAGACATTAGTTTTGATTTTTGTCCGAGATCAACAAATGGTGCGGCCCATCGTTTGGCGCGAATCGCCATCTCCCCTCCCCTGATTTTAGTTGTTCTGTTTTTTACTCTTCTTCTACTTCAGAAGAAGAAGGCTTTTGGATTGGGCCCCTGGGCTATTAAATGA

Coding sequence (CDS)

ATGGTCAACAAGAATGTGGACCCATCAAAAGCAGAGGACCTGAGTAAAATCTTGGGTATAGAGAAATCAGAAGAGTTGGGCTACTATATGGGGATGCCATCCCAAACAGGCAGGAACAAGAACAAAATTTTCAAAAATATCAAGGAAAGAATATGGAAGGCTCTCCAACAATGGAAAATTCCATTATTCTCGGTAGGTGGCAAAGAGGTTCTTATACAATCAATTGTCCAGGCTATTCCGACATACACAATGAGCTGTTTTAGACTCCCAAGCTCCCTTTGTGAAGAGATCAACAAGGCTTGTGCTAACTTTTGGTGGGGAGAGAACAATGGATCTAAAAGAGCTCATTCAGTTAGATGGAAAAATCTCTGTATTAGCAAGGACAGGGGAGGCTTAGGCTTTAGAGACTTAAATCGTTTTAATCAAGCCATGCTCGCGAAAAGATCTTCGATTTGCATGGGCTTCAAGAAGATTAAGAAAAATTGGTCAGTGAAAGTGTTCGAACTGAAAGCGATTTTGGAAGGAATCAATTGCCTACCTTCCCTGAAAGCGTCCCATCCTGATTTGGCCATCCCTCTTATTGTAGTTGAATCGAATGCAGCTGGTGTAGTCAATCTCCTCAACAAGGAAACATTTCTCGCAGAAGAGATTTTTCAGCTAAAAGAAGAAATTGGAGACATTAGTTTTGATTTTTGTCCGAGATCAACAAATGGTGCGGCCCATCGTTTGGCGCGAATCGCCATCTCCCCTCCCCTGATTTTAGTTGTTCTGTTTTTTACTCTTCTTCTACTTCAGAAGAAGAAGGCTTTTGGATTGGGCCCCTGGGCTATTAAATGA

Protein sequence

MVNKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPLFSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKNLCISKDRGGLGFRDLNRFNQAMLAKRSSICMGFKKIKKNWSVKVFELKAILEGINCLPSLKASHPDLAIPLIVVESNAAGVVNLLNKETFLAEEIFQLKEEIGDISFDFCPRSTNGAAHRLARIAISPPLILVVLFFTLLLLQKKKAFGLGPWAIK

Homology

[Close]

BLAST of Lcy09g017230 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.8e-15
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 78  AIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKNLCISK-DRGGLGFRD 137
           A+P Y MSCFRL   LC+++  A   FWW      ++   V W+ LC SK D GGLGFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 138 LNRFNQAMLAKRS 150
           L  FNQA+LAK+S
Sbjct: 62  LGWFNQALLAKQS 74

[Close]

BLAST of Lcy09g017230 vs. ExPASy TrEMBL
Match: A0A6J1CV63 (uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014662 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 80/149 (53.69%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 1   MVNKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKI 60
           MV++N     A ++   L + ++  +G Y+G+PSQT RNK ++F NI  R+W+ LQ WK 
Sbjct: 10  MVSRNTSRCVAANIESELHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRVWQFLQGWKE 69

Query: 61  PLFSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRW 120
            LFS GGKEVLI+++ QAIP Y+MSCFR P +LC+EIN   A FWWG N+  K+ H   W
Sbjct: 70  KLFSSGGKEVLIKAVAQAIPNYSMSCFRFPMNLCKEINSLYARFWWGSNDREKKIHWPSW 129

Query: 121 KNLCISKDRGGLGFRDLNRFNQAMLAKRS 150
           K LC+SK++GGLGF+DL  FNQAMLAK+S
Sbjct: 130 KRLCVSKEQGGLGFKDLCIFNQAMLAKQS 158

[Close]

BLAST of Lcy09g017230 vs. ExPASy TrEMBL
Match: A0A2I4ERH4 (uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 3   NKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPL 62
           + NV  S  EDL    G+E+S+E   Y+G+PS  GR+K + F  IK R+W+ LQ WK  +
Sbjct: 180 SSNVQQSTKEDLLNFWGVEQSQEYEKYLGLPSFVGRSKTRAFSEIKHRVWRKLQGWKEKV 239

Query: 63  FSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKN 122
            S GGKEVLI+++ QAIPTY+MSCF+LPSSLC E+ +  A FWWG+ N  K+ H + WK 
Sbjct: 240 LSAGGKEVLIKAVAQAIPTYSMSCFKLPSSLCNELEQMMAKFWWGQKNEEKKIHWISWKK 299

Query: 123 LCISKDRGGLGFRDLNRFNQAMLAKR 149
           +  +K+ GG+GF+DL  FN A+LAK+
Sbjct: 300 MSETKEEGGMGFKDLRIFNDALLAKQ 325

[Close]

BLAST of Lcy09g017230 vs. ExPASy TrEMBL
Match: A0A2N9FNT0 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16695 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 84/205 (40.98%), Postives = 122/205 (59.51%), Query Frame = 0


Query: 3    NKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPL 62
            +KN   +K E++ +ILG+   ++   Y+G+PS  G+ K   F  IKER+W  ++ WK  L
Sbjct: 812  SKNTPQAKQEEIKEILGVPSIQQYEKYLGLPSLIGKEKITCFSQIKERVWSKVKGWKEKL 871

Query: 63   FSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKN 122
             S  G+E+LI+++VQAIPTYTM+CF+LP +LC+EI      FWWG+N   ++ H ++W+ 
Sbjct: 872  LSQAGREILIKAVVQAIPTYTMNCFKLPVTLCKEIEGIIRRFWWGQNGDKRKIHWLKWEK 931

Query: 123  LCISKDRGGLGFRDLNRFNQAMLAKRSSICMGFKK--IKKNWSVKVFELKAILEGINCLP 182
            LC SK  GGLGFRDL +FN A+LAK+    M      + K +S K F    I+E      
Sbjct: 932  LCRSKGAGGLGFRDLQKFNLALLAKQFWRLMHNTNSLLYKVFSAKFFPQGNIMEASEKTR 991

Query: 183  SLK-----ASHPDLAIPLIVVESNA 201
             LK       H  +  PLI + S+A
Sbjct: 992  GLKLGFLDEGHRRVLSPLIDLPSDA 1016

[Close]

BLAST of Lcy09g017230 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-36
Identity = 77/173 (44.51%), Postives = 110/173 (63.58%), Query Frame = 0


Query: 4    KNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPLF 63
            +NV       L+ ILG+ + E  G Y+G+PS  GRNK +    IK ++W  ++ WK  +F
Sbjct: 1027 RNVTAEVRSLLAGILGVREVENHGKYLGLPSFVGRNKREFLDEIKNKVWAKMKGWKTSMF 1086

Query: 64   SVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKNL 123
            SV GKEVLI++IVQAIPTYTMSCF+LP      +++  + FWWG ++  K+ H  +W+ L
Sbjct: 1087 SVAGKEVLIKAIVQAIPTYTMSCFKLPKKTISSLHRMASRFWWGSSDKEKKIHWCKWRYL 1146

Query: 124  CISKDRGGLGFRDLNRFNQAMLAKRSSICMGFKKIKKNWSVKV--FELKAILE 175
            C  KD+GGLGFRDL  FNQA+LAK+   C+   ++  +  +K   F  K +LE
Sbjct: 1147 CRPKDKGGLGFRDLGMFNQALLAKQIWRCLRHPQLLCSRVLKASYFPRKGVLE 1199

[Close]

BLAST of Lcy09g017230 vs. ExPASy TrEMBL
Match: A0A2N9EXW4 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7574 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-36
Identity = 70/145 (48.28%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 4   KNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPLF 63
           KN      + +  +  + K +    Y+G+PS  GR+K+  F  +K R+WK +  WK    
Sbjct: 685 KNTSMDMRQRIQGVFQVPKIKNHEKYLGLPSFVGRSKSTSFGELKGRVWKKINGWKEKFL 744

Query: 64  SVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKNL 123
           S GG+EVLI+++ Q+IPTYTMSCFRLP  LC ++N   +NFWWG+++  KRAH +RW  L
Sbjct: 745 SHGGREVLIKAVAQSIPTYTMSCFRLPDGLCNDLNNMFSNFWWGQHDKKKRAHWIRWSQL 804

Query: 124 CISKDRGGLGFRDLNRFNQAMLAKR 149
           C+SK+ GGLGFRDL  FNQA+LAK+
Sbjct: 805 CLSKEAGGLGFRDLRMFNQALLAKQ 829

[Close]

BLAST of Lcy09g017230 vs. NCBI nr
Match: XP_022145148.1 (uncharacterized protein LOC111014662 [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 2.6e-40
Identity = 80/149 (53.69%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 1   MVNKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKI 60
           MV++N     A ++   L + ++  +G Y+G+PSQT RNK ++F NI  R+W+ LQ WK 
Sbjct: 10  MVSRNTSRCVAANIESELHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRVWQFLQGWKE 69

Query: 61  PLFSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRW 120
            LFS GGKEVLI+++ QAIP Y+MSCFR P +LC+EIN   A FWWG N+  K+ H   W
Sbjct: 70  KLFSSGGKEVLIKAVAQAIPNYSMSCFRFPMNLCKEINSLYARFWWGSNDREKKIHWPSW 129

Query: 121 KNLCISKDRGGLGFRDLNRFNQAMLAKRS 150
           K LC+SK++GGLGF+DL  FNQAMLAK+S
Sbjct: 130 KRLCVSKEQGGLGFKDLCIFNQAMLAKQS 158

[Close]

BLAST of Lcy09g017230 vs. NCBI nr
Match: XP_018821989.1 (uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical protein F2P56_024162 [Juglans regia])

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-38
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 3   NKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPL 62
           + NV  S  EDL    G+E+S+E   Y+G+PS  GR+K + F  IK R+W+ LQ WK  +
Sbjct: 180 SSNVQQSTKEDLLNFWGVEQSQEYEKYLGLPSFVGRSKTRAFSEIKHRVWRKLQGWKEKV 239

Query: 63  FSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKN 122
            S GGKEVLI+++ QAIPTY+MSCF+LPSSLC E+ +  A FWWG+ N  K+ H + WK 
Sbjct: 240 LSAGGKEVLIKAVAQAIPTYSMSCFKLPSSLCNELEQMMAKFWWGQKNEEKKIHWISWKK 299

Query: 123 LCISKDRGGLGFRDLNRFNQAMLAKR 149
           +  +K+ GG+GF+DL  FN A+LAK+
Sbjct: 300 MSETKEEGGMGFKDLRIFNDALLAKQ 325

[Close]

BLAST of Lcy09g017230 vs. NCBI nr
Match: XP_010682933.1 (PREDICTED: uncharacterized protein LOC104897695 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-34
Identity = 68/146 (46.58%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 3   NKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPL 62
           +KNVD S+  D+  + G+ + E    Y+G+P+  GR+K  +F  +KER+WK LQ WK  L
Sbjct: 690 SKNVDDSRKNDIRSLFGVREVERHEKYLGLPTVIGRSKKMVFTVLKERVWKKLQGWKEKL 749

Query: 63  FSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKN 122
            S  GKEVL+++++Q+IPTY MS F +P  +  EIN  CA FWWG     +R H + W+ 
Sbjct: 750 LSRAGKEVLLKAVIQSIPTYMMSLFAIPDCILSEINAMCARFWWGSRGTERRMHWLSWEK 809

Query: 123 LCISKDRGGLGFRDLNRFNQAMLAKR 149
           +C+ K  GG+GFRDL  FNQA+LAK+
Sbjct: 810 MCLPKAYGGMGFRDLKVFNQALLAKQ 835

[Close]

BLAST of Lcy09g017230 vs. NCBI nr
Match: XP_021770651.1 (uncharacterized protein LOC110734814 [Chenopodium quinoa])

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-34
Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 3   NKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPL 62
           +KNVD S+ E++  ILG+ + E+   Y+G+P+  GR+K  IF  +KER+WK LQ WK  L
Sbjct: 126 SKNVDNSRREEIIGILGVTEVEQHEKYLGLPTIIGRSKKVIFAGLKERLWKKLQGWKEKL 185

Query: 63  FSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKN 122
            S  GKE+LI+++ Q IPTY MS F++P +L +EI+   A FWWG  +  ++ H  RW+ 
Sbjct: 186 LSRPGKEILIKAVAQTIPTYMMSIFKIPDTLIDEIHSLLARFWWGSTDSGRKMHWQRWEL 245

Query: 123 LCISKDRGGLGFRDLNRFNQAMLAKR 149
           LC  K +GG+GFRDL  FNQA+LAK+
Sbjct: 246 LCQPKGKGGMGFRDLRYFNQALLAKQ 271

[Close]

BLAST of Lcy09g017230 vs. NCBI nr
Match: XP_010687489.1 (PREDICTED: uncharacterized protein LOC104901596 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 3.6e-34
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 0


Query: 3   NKNVDPSKAEDLSKILGIEKSEELGYYMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPL 62
           ++NVD     ++  +LG+ +  +   Y+G+P+  GR+K   F  IKERIWK LQ WK  L
Sbjct: 446 SRNVDSGCRSEIVNVLGVTEVAKQEKYLGLPTIIGRSKKVTFVCIKERIWKKLQGWKEKL 505

Query: 63  FSVGGKEVLIQSIVQAIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKN 122
            S  GKEVLI+++VQAIPTY MS F LPS L +EI+   A FWWG   G ++ H  +W+ 
Sbjct: 506 LSHPGKEVLIKAVVQAIPTYMMSVFCLPSGLVDEIHSLIARFWWGSKEGERKMHWYKWET 565

Query: 123 LCISKDRGGLGFRDLNRFNQAMLAKRSSICMGFKKIKKNWSVKVFELKA 172
           LC+ K  GGLGFRDL+ FNQA+LAK++     ++  K ++S+    LKA
Sbjct: 566 LCMPKSMGGLGFRDLHCFNQALLAKQA-----WRLTKNSYSLLALVLKA 609

[Close]

BLAST of Lcy09g017230 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 82.4 bits (202), Expect = 6.2e-16
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 78  AIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKNLCISK-DRGGLGFRD 137
           A+P Y MSCFRL   LC+++  A   FWW      ++   V W+ LC SK D GGLGFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 138 LNRFNQAMLAKRS 150
           L  FNQA+LAK+S
Sbjct: 62  LGWFNQALLAKQS 74

[Close]

BLAST of Lcy09g017230 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-14
Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 0


Query: 29  YMGMPSQTGRNKNKIFKNIKERIWKALQQWKIPLFSVGGKEVLIQSIVQAIPTYTMSCFR 88
           Y+G+P  T +     +  + E+I   + +W     S  G+  LI S++ ++  + MS FR
Sbjct: 27  YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 86

Query: 89  LPSSLCEEINKACANFWWGENNGSKRAHSVRWKNLCISKDRGGLGFRDLNRFNQ 143
           LPS+  +EI+  C++F W     + +   V W ++C  KD GGLG R L   N+
Sbjct: 87  LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANK 140

[Close]

BLAST of Lcy09g017230 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-14
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 78  AIPTYTMSCFRLPSSLCEEINKACANFWWGENNGSKRAHSVRWKNLCISKDRGGLGFRDL 137
           A+PTYTM+CF LP ++C++I    A+FWW     +K  H   W +L   K  GG+GF+D+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 138 NRFNQAMLAKR 149
             FN A+L K+
Sbjct: 62  EAFNLALLGKQ 72

[Close]

BLAST of Lcy09g017230 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.1e-04
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 194 IVVESNAAGVVNLLNKETF------LAEEIFQLKEEIGDISFDFCPRSTNGAAHRLARIA 250
           I+ ES+A  +VNLLN + F        E+I QL     ++ F+F PR  N  A R+AR +
Sbjct: 210 IIFESDAQALVNLLNSDDFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARES 269

The following BLAST results are available for this feature:

BLAST of Lcy09g017230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	8.8e-15	52.05	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy09g017230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV63	1.3e-40	53.69	uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A2I4ERH4	1.5e-38	50.68	uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 P...	[more]
A0A2N9FNT0	2.5e-36	40.98	RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16695 ...	[more]
A0A803Q1K6	3.2e-36	44.51	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2N9EXW4	4.2e-36	48.28	CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7574...	[more]

BLAST of Lcy09g017230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145148.1	2.6e-40	53.69	uncharacterized protein LOC111014662 [Momordica charantia]	[more]
XP_018821989.1	3.2e-38	50.68	uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical ...	[more]
XP_010682933.1	1.6e-34	46.58	PREDICTED: uncharacterized protein LOC104897695 [Beta vulgaris subsp. vulgaris]	[more]
XP_021770651.1	2.8e-34	48.63	uncharacterized protein LOC110734814 [Chenopodium quinoa]	[more]
XP_010687489.1	3.6e-34	46.15	PREDICTED: uncharacterized protein LOC104901596 [Beta vulgaris subsp. vulgaris]	[more]

BLAST of Lcy09g017230 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00310.1	6.2e-16	52.05	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT3G24255.1	2.6e-14	31.58	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	7.6e-14	43.66	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	1.1e-04	40.32	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 125..250 e-value: 1.7E-5 score: 26.7
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 150..245 e-value: 1.4E-6 score: 28.2
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 4..163
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 4..163
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 168..245 e-value: 2.09267E-9 score: 52.3164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g017230.1	Lcy09g017230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity