Lcy09g016950 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016950
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Fanconi-associated nuclease
Location	Chr09: 31396674 .. 31397159 (+)
RNA-Seq Expression	Lcy09g016950
Synteny	Lcy09g016950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCCTCGGTCAATTTCAAGGAAGATATTTAGGCCAAAGGTAGATGAATCTTCATCTCCCAAGGTACCAATTCAAGGGGAGGTCGTGGATGCTACAAAATCTACAAAAGGAAAGGGGAAGCAAGTTGTACAAGATGAGTTTAGCATGGTTCAACCATCTTTTCCTCCACCAAGGAAAATCTCGAAAAATAAAGGGAAGGAGCCTATATCATCAGTGAGAGAGGAGCCCAAGAGATTTATCAATGCCACTGCTGCAGTTCGGTTTGAAGATTTACAAAAAAGGGAGATGTTGCCCGAGAGAGGGTTTGATTCAGACTTGGAGAAGCTGCCCCATTTCCTTGTTGTCATCATCAGGAATCAATGTTGGGAAAATATTTGCAAGAAGCCAGAACCAGCAGTTATTAACTTAGTCAAGGAGTTTTATGCAAACTTCCAGGACAATGGCTTGTGGTTAACAAAGGTCAGAGACCAAATAGTGCAATGA

mRNA sequence

ATGGGGCCTCGGTCAATTTCAAGGAAGATATTTAGGCCAAAGGTAGATGAATCTTCATCTCCCAAGGTACCAATTCAAGGGGAGGTCGTGGATGCTACAAAATCTACAAAAGGAAAGGGGAAGCAAGTTGTACAAGATGAGTTTAGCATGGTTCAACCATCTTTTCCTCCACCAAGGAAAATCTCGAAAAATAAAGGGAAGGAGCCTATATCATCAGTGAGAGAGGAGCCCAAGAGATTTATCAATGCCACTGCTGCAGTTCGGTTTGAAGATTTACAAAAAAGGGAGATGTTGCCCGAGAGAGGGTTTGATTCAGACTTGGAGAAGCTGCCCCATTTCCTTGTTGTCATCATCAGGAATCAATGTTGGGAAAATATTTGCAAGAAGCCAGAACCAGCAGTTATTAACTTAGTCAAGGAGTTTTATGCAAACTTCCAGGACAATGGCTTGTGGTTAACAAAGGTCAGAGACCAAATAGTGCAATGA

Coding sequence (CDS)

ATGGGGCCTCGGTCAATTTCAAGGAAGATATTTAGGCCAAAGGTAGATGAATCTTCATCTCCCAAGGTACCAATTCAAGGGGAGGTCGTGGATGCTACAAAATCTACAAAAGGAAAGGGGAAGCAAGTTGTACAAGATGAGTTTAGCATGGTTCAACCATCTTTTCCTCCACCAAGGAAAATCTCGAAAAATAAAGGGAAGGAGCCTATATCATCAGTGAGAGAGGAGCCCAAGAGATTTATCAATGCCACTGCTGCAGTTCGGTTTGAAGATTTACAAAAAAGGGAGATGTTGCCCGAGAGAGGGTTTGATTCAGACTTGGAGAAGCTGCCCCATTTCCTTGTTGTCATCATCAGGAATCAATGTTGGGAAAATATTTGCAAGAAGCCAGAACCAGCAGTTATTAACTTAGTCAAGGAGTTTTATGCAAACTTCCAGGACAATGGCTTGTGGTTAACAAAGGTCAGAGACCAAATAGTGCAATGA

Protein sequence

MGPRSISRKIFRPKVDESSSPKVPIQGEVVDATKSTKGKGKQVVQDEFSMVQPSFPPPRKISKNKGKEPISSVREEPKRFINATAAVRFEDLQKREMLPERGFDSDLEKLPHFLVVIIRNQCWENICKKPEPAVINLVKEFYANFQDNGLWLTKVRDQIVQ

Homology

[Close]

BLAST of Lcy09g016950 vs. ExPASy TrEMBL
Match: A0A7J6G6G2 (Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-05
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 76  EPKRFINATAAVRFED-LQKREMLPERGF---DSDLEKLPHFLVVIIRNQCWENICKKPE 135
           EP++FI+  A  ++ D ++ +E   ERG    D +   +P +L+  I+ + WE +C+ P 
Sbjct: 617 EPRKFISKAAEAKYRDSVRHKEFYIERGIIVGDDNFGSMPPWLIENIKKRKWEGLCEDPA 676

Query: 136 PAVINLVKEFYANF 146
            AV  +VKEFYANF
Sbjct: 677 SAVCQVVKEFYANF 690

[Close]

BLAST of Lcy09g016950 vs. ExPASy TrEMBL
Match: W9RBS1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 61  ISKNKGKEPISSVRE--EPKRFINATAAVRFED-LQKREMLPERGF---DSDLEKLPHFL 120
           I K    +P SS R+    ++F++  A  R+E+ +  R ++ E+GF   DS     P F+
Sbjct: 20  IDKAAAADPSSSTRQVSANRKFVDNAAEKRYEENIWARNLVKEKGFLLHDSPTLGQPGFI 79

Query: 121 VVIIRNQCWENICKKPEPAVINLVKEFYANFQDNG 150
             +I ++ W+  C+ P   ++ LVKEFYAN Q+ G
Sbjct: 80  SDVIISRGWQIFCRHPIDPIVPLVKEFYANLQNQG 114

[Close]

BLAST of Lcy09g016950 vs. NCBI nr
Match: KAF4378427.1 (hypothetical protein F8388_021621 [Cannabis sativa])

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-05
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 76  EPKRFINATAAVRFED-LQKREMLPERGF---DSDLEKLPHFLVVIIRNQCWENICKKPE 135
           EP++FI+  A  ++ D ++ +E   ERG    D +   +P +L+  I+ + WE +C+ P 
Sbjct: 617 EPRKFISKAAEAKYRDSVRHKEFYIERGIIVGDDNFGSMPPWLIENIKKRKWEGLCEDPA 676

Query: 136 PAVINLVKEFYANF 146
            AV  +VKEFYANF
Sbjct: 677 SAVCQVVKEFYANF 690

[Close]

BLAST of Lcy09g016950 vs. NCBI nr
Match: XP_022855963.1 (uncharacterized protein LOC111377136 [Olea europaea var. sylvestris])

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-05
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 57  PPRKISKNKGKEPISS----VREEP---KRFINATAAVRFEDLQKR-EMLPERGFDSDLE 116
           PP++ SK K K   +S     RE     +RF+++  A R+ ++ +   ++PER     LE
Sbjct: 10  PPKRTSKGKEKVGSASGTARTRESEGGVRRFLSSDTAARYANVVRNWALVPER--PVKLE 69

Query: 117 KLPHF-LVVIIRNQCWENICKKPEPAVINLVKEFYANF 146
             P F LV +I N  WE + ++P P   NLVKEFYANF
Sbjct: 70  DFPDFELVYLIHNYGWEKVIERPHPVYENLVKEFYANF 105

[Close]

BLAST of Lcy09g016950 vs. NCBI nr
Match: EXB49850.1 (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-04
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 61  ISKNKGKEPISSVRE--EPKRFINATAAVRFED-LQKREMLPERGF---DSDLEKLPHFL 120
           I K    +P SS R+    ++F++  A  R+E+ +  R ++ E+GF   DS     P F+
Sbjct: 20  IDKAAAADPSSSTRQVSANRKFVDNAAEKRYEENIWARNLVKEKGFLLHDSPTLGQPGFI 79

Query: 121 VVIIRNQCWENICKKPEPAVINLVKEFYANFQDNG 150
             +I ++ W+  C+ P   ++ LVKEFYAN Q+ G
Sbjct: 80  SDVIISRGWQIFCRHPIDPIVPLVKEFYANLQNQG 114

The following BLAST results are available for this feature:

BLAST of Lcy09g016950 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6G6G2	2.9e-05	37.84	Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1	[more]
W9RBS1	1.9e-04	33.68	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000844 PE=4 SV=1	[more]

BLAST of Lcy09g016950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4378427.1	6.0e-05	37.84	hypothetical protein F8388_021621 [Cannabis sativa]	[more]
XP_022855963.1	7.8e-05	38.78	uncharacterized protein LOC111377136 [Olea europaea var. sylvestris]	[more]
EXB49850.1	3.9e-04	33.68	hypothetical protein L484_000844 [Morus notabilis]	[more]

BLAST of Lcy09g016950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016950.1	Lcy09g016950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0016787	hydrolase activity