Lcy09g016870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H
Location	Chr09: 30951633 .. 30953432 (-)
RNA-Seq Expression	Lcy09g016870
Synteny	Lcy09g016870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAATTCAGGGACTAGTGGAAGACTCTGAGTATGAGCAGAAAGCACCGAATATGACCAAGGCCGACCCTGATAAGGAAGAGGTTGACCCTAACCCCGGGGTTTAGCAAAAGGTCTCGCGTATTCATGATGCTATCGGAAGTGACCCAAGGGAACAACCCGCGGAAGAACTTAAGTCAGTACCACTAACATCTGAGGAAAGGAGAGTGAACATCAGCACCAAGCTGGGGGCTGAACAGAGAGAAAGACTGATTAGTTTCCTGAGGGCTAATGCGGATCTGTTTGCATGGTCACACGAGGATATGCCGGGAATCGACCCAGCAGTAATGATTCACCAACTAAATGTAGATAGGGATTTGAAGCCAATAAAGTAGAAATGGCGAGCGTTCAATACGGAAAGGAATGAGGTTATTGCTAGTCAAGTGGATGAATTGCTCAAAGCTGGGTTCATCAGGGAGGTCCACTACCCCCAGTGGCTTTCCAATCTGGTATTGGTGAAAAAGGCCAACAGGAAGTGGCGAATGTGCATCGATTTCACAGACCTAAATAAAGCATGCCCTAAAGACAGTTACCCCTTACCCATGATCGATCAGTTGGTTGATACATCGGCAGGACATGAGATGCTAAGTTTTATGGACGCGTACTCGGATACAACCAGATCAAGATGCAGGAACCCGATCAGGAGAAGACTTCTTTTATCACCAGCCGAGGGTTGTACTGCACAAAGTCATGTCATTCGGTCTGAAGAATGTCGGGGATACGTATTAGCGGATGGTAAATCACATGTTTGCTCCCTTGTTGGGAAAGAACATGAAAGTATACATGGATGATATGCTGGTGAAAAGTGTGAAGTCTCAGTGCCACGAGTCTGATCTCAACGAGGCTTTCCAAATGCTCCGAAAGTACCAAATGAAACTAAATCCGAGTAAGTGTGCTTTCGGAGTAACGTCAGGTAAATTCCTAGGATTCATGGTGCATCAGAGGGGGATAGAGGCAAATTCAGACAAGATAAGAGCAATCATGCAAATGTCCTCCCCATCCAATCTTAAGCAACTACAAAGTTTGAACGGAAGGATCACAGCGTTGAACAGGTTTGTTAGCAGATCTACTGATAGGTGCTTACCTTTCTTTAAAATCTTGAGACAGGGGTCGCGTTTCGAATGGACGGAAGAGTGCGAAAAAGCCTTTCGGGAACTGAAAGCCTATATGAGTTCAGCCCCACTCTTGGTAAGCCACTCCCTGGTGATGAACTGCTGCTTTATGTGGCAACCTCAGATACGACTTGTAAGCGACCCGTATATTATACCAGTAAATATATGGTCGGAACATAAACAAGATACCCCCAAATAGAGAAGCTTGCCCTGGCCTTGGTTACGTCAGCCAGAAGATTGCGACCATACTTCCAAGCGCATAAGGTAACAGTTTTGACAAATTTTCCTCTAAAACAGATGCTGCAGAAACCAAATGCCTCGGGTCGCCTCATGAAGTGGGTAGTGGAGTTAAGTGAGTACGACATCCACTACAAACCTCGAACAACAATGAAAGGGCAAGTCGTGGCAGATTTTGTTGCAGAGTTAACAGCTGTCGAGATTGAGGCCGACCCGCAGAGGCCCGAGGCCGAGCCGAGCAAGTTAGTGGCAACTATCAATCTACTGGATTTAGGAAGGGCGAGACGGATGTGGACACTTTTTTTAGATGGGTCTTCTTACACCAAGGGCTGTGGGGTAGGGATTTTGCTGGAATCTCCTGACGGAGGGAGATTTGAGTATGCCCTGAGGTTTAACTTCAAGGCCTAA

mRNA sequence

ATGAGGCAAATTCAGGGACTAGTGGAAGACTCTGAGTATGAGCAGAAAGCACCGAATATGACCAAGGCCGACCCTGATAAGGAAGAGGTTGACCCTAACCCCGGGATGCTGCAGAAACCAAATGCCTCGGGTCGCCTCATGAAGTGGGTAGTGGAGTTAAGTGAGTACGACATCCACTACAAACCTCGAACAACAATGAAAGGGCAAGTCGTGGCAGATTTTGTTGCAGAGTTAACAGCTGTCGAGATTGAGGCCGACCCGCAGAGGCCCGAGGCCGAGCCGAGCAAGTTAGTGGCAACTATCAATCTACTGGATTTAGGAAGGGCGAGACGGATGTGGACACTTTTTTTAGATGGGTCTTCTTACACCAAGGGCTGTGGGGTAGGGATTTTGCTGGAATCTCCTGACGGAGGGAGATTTGAGTATGCCCTGAGGTTTAACTTCAAGGCCTAA

Coding sequence (CDS)

ATGAGGCAAATTCAGGGACTAGTGGAAGACTCTGAGTATGAGCAGAAAGCACCGAATATGACCAAGGCCGACCCTGATAAGGAAGAGGTTGACCCTAACCCCGGGATGCTGCAGAAACCAAATGCCTCGGGTCGCCTCATGAAGTGGGTAGTGGAGTTAAGTGAGTACGACATCCACTACAAACCTCGAACAACAATGAAAGGGCAAGTCGTGGCAGATTTTGTTGCAGAGTTAACAGCTGTCGAGATTGAGGCCGACCCGCAGAGGCCCGAGGCCGAGCCGAGCAAGTTAGTGGCAACTATCAATCTACTGGATTTAGGAAGGGCGAGACGGATGTGGACACTTTTTTTAGATGGGTCTTCTTACACCAAGGGCTGTGGGGTAGGGATTTTGCTGGAATCTCCTGACGGAGGGAGATTTGAGTATGCCCTGAGGTTTAACTTCAAGGCCTAA

Protein sequence

MRQIQGLVEDSEYEQKAPNMTKADPDKEEVDPNPGMLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQRPEAEPSKLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA

Homology

[Close]

BLAST of Lcy09g016870 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.1e-28
Identity = 68/115 (59.13%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQRPEAEPS 95
           +LQKP+ SGRL+KW VELSEYDIHYKPRT MKGQVVADF+AELT  E    PQ    EP 
Sbjct: 589 ILQKPDTSGRLVKWAVELSEYDIHYKPRTAMKGQVVADFIAELTPTE----PQVYSIEPQ 648

Query: 96  KLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
            +             ++WTL++DGSS  +GCG G+LL SPD  RFEY LRFNF A
Sbjct: 649 VV----------EEEQLWTLYVDGSSNFRGCGAGLLLISPDKERFEYVLRFNFHA 689

[Close]

BLAST of Lcy09g016870 vs. ExPASy TrEMBL
Match: A0A6J1DZU0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 67/118 (56.78%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEA---DPQRPEA 95
           +LQKP  SGRL+KW VEL+EYDIHYKPRT MKGQVV DF+AELT +E +    DPQ  E 
Sbjct: 252 ILQKPETSGRLVKWAVELNEYDIHYKPRTAMKGQVVVDFIAELTPIEPQVYSIDPQVVEE 311

Query: 96  EPSKLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
           E                 ++WTL++DGSS  +GCG G+LL SPD  RFEYAL+FNF A
Sbjct: 312 E-----------------QLWTLYVDGSSNFRGCGAGLLLISPDKERFEYALQFNFHA 352

[Close]

BLAST of Lcy09g016870 vs. ExPASy TrEMBL
Match: A0A5E4GKF9 (PREDICTED: rve domain-containing (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B028242 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQ---RPEA 95
           +LQKP  SGRL+KW +EL E+DIHYKPR  M+GQ VADF++E T  +  A PQ    P  
Sbjct: 35  VLQKPETSGRLVKWAIELGEFDIHYKPRPAMRGQAVADFLSEFTEPQASAAPQLITEPNP 94

Query: 96  EPSK-LVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
            PS+    T N LDL   + +WTLF+DGSS  +GCG G++L SPD    EYALRFNF+A
Sbjct: 95  SPSQDQTPTKNTLDL--TQPLWTLFVDGSSNAQGCGAGLVLVSPDKVALEYALRFNFQA 151

[Close]

BLAST of Lcy09g016870 vs. ExPASy TrEMBL
Match: A0A6J1E1Q5 (uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025623 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 65/115 (56.52%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQRPEAEPS 95
           +LQ+P+ SGRL+KW VELSEYDIHYKPRT+MKG  VADF+AELT     A PQ    +P 
Sbjct: 192 ILQRPDISGRLVKWAVELSEYDIHYKPRTSMKGHAVADFIAELT----PAKPQVCSIDP- 251

Query: 96  KLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
                     L +  + WTL++DGSS  +GC  G+LL SPD  RFEYALRFNF A
Sbjct: 252 ---------QLVKEEQPWTLYVDGSSNFRGCETGLLLISPDKERFEYALRFNFHA 292

[Close]

BLAST of Lcy09g016870 vs. ExPASy TrEMBL
Match: A0A5E4G9U1 (PREDICTED: rve domain-containing (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B023606 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 64/119 (53.78%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQ---RPEA 95
           +LQKP  SGRL+KW +EL E+DIHYKPR  M+GQ VADF++E T  +  A  Q    P  
Sbjct: 35  VLQKPETSGRLVKWAIELGEFDIHYKPRPAMRGQAVADFLSEFTEPQASAATQLITEPNP 94

Query: 96  EPSK-LVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
            PS+    T N LDL   + +WTLF+DGSS  +GCG G++L SPD    EYALRFNF+A
Sbjct: 95  SPSQGQTPTENTLDL--TQPLWTLFVDGSSNAQGCGAGLVLISPDKVALEYALRFNFQA 151

[Close]

BLAST of Lcy09g016870 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 68/115 (59.13%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQRPEAEPS 95
           +LQKP+ SGRL+KW VELSEYDIHYKPRT MKGQVVADF+AELT  E    PQ    EP 
Sbjct: 589 ILQKPDTSGRLVKWAVELSEYDIHYKPRTAMKGQVVADFIAELTPTE----PQVYSIEPQ 648

Query: 96  KLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
            +             ++WTL++DGSS  +GCG G+LL SPD  RFEY LRFNF A
Sbjct: 649 VV----------EEEQLWTLYVDGSSNFRGCGAGLLLISPDKERFEYVLRFNFHA 689

[Close]

BLAST of Lcy09g016870 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-27
Identity = 67/118 (56.78%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEA---DPQRPEA 95
           +LQKP  SGRL+KW VEL+EYDIHYKPRT MKGQVV DF+AELT +E +    DPQ  E 
Sbjct: 252 ILQKPETSGRLVKWAVELNEYDIHYKPRTAMKGQVVVDFIAELTPIEPQVYSIDPQVVEE 311

Query: 96  EPSKLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
           E                 ++WTL++DGSS  +GCG G+LL SPD  RFEYAL+FNF A
Sbjct: 312 E-----------------QLWTLYVDGSSNFRGCGAGLLLISPDKERFEYALQFNFHA 352

[Close]

BLAST of Lcy09g016870 vs. NCBI nr
Match: VVA40103.1 (PREDICTED: rve domain-containing, partial [Prunus dulcis])

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-26
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQ---RPEA 95
           +LQKP  SGRL+KW +EL E+DIHYKPR  M+GQ VADF++E T  +  A PQ    P  
Sbjct: 35  VLQKPETSGRLVKWAIELGEFDIHYKPRPAMRGQAVADFLSEFTEPQASAAPQLITEPNP 94

Query: 96  EPSK-LVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
            PS+    T N LDL   + +WTLF+DGSS  +GCG G++L SPD    EYALRFNF+A
Sbjct: 95  SPSQDQTPTKNTLDL--TQPLWTLFVDGSSNAQGCGAGLVLVSPDKVALEYALRFNFQA 151

[Close]

BLAST of Lcy09g016870 vs. NCBI nr
Match: XP_022159204.1 (uncharacterized protein LOC111025623 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-25
Identity = 65/115 (56.52%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQRPEAEPS 95
           +LQ+P+ SGRL+KW VELSEYDIHYKPRT+MKG  VADF+AELT     A PQ    +P 
Sbjct: 192 ILQRPDISGRLVKWAVELSEYDIHYKPRTSMKGHAVADFIAELT----PAKPQVCSIDP- 251

Query: 96  KLVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
                     L +  + WTL++DGSS  +GC  G+LL SPD  RFEYALRFNF A
Sbjct: 252 ---------QLVKEEQPWTLYVDGSSNFRGCETGLLLISPDKERFEYALRFNFHA 292

[Close]

BLAST of Lcy09g016870 vs. NCBI nr
Match: XP_034198601.1 (uncharacterized protein LOC117614034 [Prunus dulcis])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-25
Identity = 64/119 (53.78%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 36  MLQKPNASGRLMKWVVELSEYDIHYKPRTTMKGQVVADFVAELTAVEIEADPQ---RPEA 95
           +LQKP  SGRL+KW +EL E+DIHYKPR  M+GQ VADF++E T  +  A  Q    P  
Sbjct: 127 VLQKPETSGRLVKWAIELGEFDIHYKPRPAMRGQAVADFLSEFTEPQASAATQLITEPNP 186

Query: 96  EPSK-LVATINLLDLGRARRMWTLFLDGSSYTKGCGVGILLESPDGGRFEYALRFNFKA 151
            PS+    T N LDL   + +WTLF+DGSS  +GCG G++L SPD    EYALRFNF+A
Sbjct: 187 SPSQDQTPTKNTLDL--TQPLWTLFVDGSSNAQGCGAGLVLVSPDKVALEYALRFNFQA 243

The following BLAST results are available for this feature:

BLAST of Lcy09g016870 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC6	5.1e-28	59.13	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DZU0	2.5e-27	56.78	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1	[more]
A0A5E4GKF9	1.6e-26	54.62	PREDICTED: rve domain-containing (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2...	[more]
A0A6J1E1Q5	1.1e-25	56.52	uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5E4G9U1	1.8e-25	53.78	PREDICTED: rve domain-containing (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2...	[more]

BLAST of Lcy09g016870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156571.1	1.0e-27	59.13	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022158579.1	5.2e-27	56.78	uncharacterized protein LOC111025033 [Momordica charantia]	[more]
VVA40103.1	3.4e-26	54.62	PREDICTED: rve domain-containing, partial [Prunus dulcis]	[more]
XP_022159204.1	2.2e-25	56.52	uncharacterized protein LOC111025623 [Momordica charantia]	[more]
XP_034198601.1	2.8e-25	53.78	uncharacterized protein LOC117614034 [Prunus dulcis]	[more]

BLAST of Lcy09g016870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016870.1	Lcy09g016870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity