Lcy09g014960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g014960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionS ribonuclease
LocationChr09: 19854136 .. 19854879 (+)
RNA-Seq ExpressionLcy09g014960
SyntenyLcy09g014960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGTAGAACACACTAAGAAAAAGGAGAAGGAGGACAAGGATGCATTAGAGGTGTTCAGGAAGGTTTTAGTGAACATCCTCTTGGAGGCTATTCAACAATTCCCAAGGTATGCTAGATTCCTCAAAAAGTGGTGTACCAAAAAGAGAACCTCCAACAAGAAAAAGGTTAGTGAAAATCTTTCCATCCTTGCTTTCAAACCTCTACCGGAAAAGTGCTTAGATCTAGGTATGTTTTCTTTACCTTGTATGATAGGACATTATTATATTAAACATGCCATGCTAGACTTAGGAGCTTCAATTAATATGATGCCTATATCTTTATAACATGAGTTAGGATTGTCTAATTTGCATGAGACTAGTGTTATCATTCAGTTTAGCTGATAGATCTAGCATATCTCCTTTGGGTGTTTGTGAGAATGTCCTTGTTAAAGTAGAGGATTTAGTCTTTCTTGTTGATTTTCATGTACTTGACATGCCTGCACCTTGTAATTCCATTTCTGCTTCTATTATTTTGGGTCGACCTTTTATGAAAACGGCCAAGGTACACATTGATGTTGACTCAAGAGTAGTTACAATAGGATTTAAAGGAAAGACATTGACATTTAGGATAGTTGGCCATAACCCTAATTCTTCTATTCATCTTAGCACCGTTAGTTCTTCACTTACCCCATGTATCTCTAAGGATGTTGATTATGTTTCTTTGATGATGAGTCTTTGGATATTGCACATTTCAGTTCTACTAG

mRNA sequence

GTTGGTAGAACACACTAAGAAAAAGGAGAAGGAGGACAAGGATGCATTAGAGGTGTTCAGGAAGGTTTTAGTGAACATCCTCTTGGAGGCTATTCAACAATTCCCAAGGTATGCTAGATTCCTCAAAAAGTGGTGTACCAAAAAGAGAACCTCCAACAAGAAAAAGTTCTACTAG

Coding sequence (CDS)

GTTGGTAGAACACACTAAGAAAAAGGAGAAGGAGGACAAGGATGCATTAGAGGTGTTCAGGAAGGTTTTAGTGAACATCCTCTTGGAGGCTATTCAACAATTCCCAAGGTATGCTAGATTCCTCAAAAAGTGGTGTACCAAAAAGAGAACCTCCAACAAGAAAAAGTTCTACTAG

Protein sequence

LVEHTKKKEKEDKDALEVFRKVLVNILLEAIQQFPRYARFLKKWCTKKRTSNKKKFY
Homology
[Close]
BLAST of Lcy09g014960 vs. ExPASy TrEMBL
Match: A0A6P4PUR3 (uncharacterized protein LOC108481482 OS=Gossypium arboreum OX=29729 GN=LOC108481482 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-06
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKR 50
           KKEKE+K+ LE FRKV VNI LL+AI+Q PRYA+FLK+ CT+KR
Sbjct: 112 KKEKEEKEILETFRKVEVNIPLLDAIKQIPRYAKFLKELCTRKR 155

[Close]
BLAST of Lcy09g014960 vs. ExPASy TrEMBL
Match: A0A5N5G479 (S ribonuclease OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039148 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWC-TKKRTSNKK 55
           KKEK +KD LE+FRKV VNI LL+AI+Q P+YA+FLK+ C T+KR SNK+
Sbjct: 53  KKEKHEKDILEMFRKVQVNIPLLDAIKQVPKYAKFLKELCTTRKRASNKE 102

[Close]
BLAST of Lcy09g014960 vs. ExPASy TrEMBL
Match: A0A1U8MAJ4 (uncharacterized protein LOC107900117 OS=Gossypium hirsutum OX=3635 GN=LOC107935672 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKR 50
           KKEKE+K+ LE FRKV VNI LL+AI+Q PRYA+FLK+ CT KR
Sbjct: 276 KKEKEEKEILETFRKVEVNIPLLDAIKQIPRYAKFLKELCTSKR 319

[Close]
BLAST of Lcy09g014960 vs. ExPASy TrEMBL
Match: A0A6P4P5K2 (uncharacterized protein LOC108473727 OS=Gossypium arboreum OX=29729 GN=LOC108473727 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKR 50
           KKEKE+K+ LE FRKV VNI LL+AI+Q PRYA+FLK+ CT KR
Sbjct: 82  KKEKEEKEILETFRKVEVNIHLLDAIKQIPRYAKFLKELCTSKR 125

[Close]
BLAST of Lcy09g014960 vs. ExPASy TrEMBL
Match: A0A6P4N2L1 (uncharacterized protein LOC108466226 OS=Gossypium arboreum OX=29729 GN=LOC108466226 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKR 50
           KKEKE+K+ LE+FRKV VNI LL+AI+Q PRYA+F+K+ CT KR
Sbjct: 538 KKEKEEKEILEIFRKVEVNIPLLDAIKQIPRYAKFVKELCTSKR 581

[Close]
BLAST of Lcy09g014960 vs. NCBI nr
Match: XP_024190405.1 (uncharacterized protein LOC112194390 [Rosa chinensis])

HSP 1 Score: 59.7 bits (143), Expect = 9.5e-06
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKRTSN 53
           KKE+E+KD LE FRKV VNI LL+AI+Q P+YA+FLK+ CTKK+  N
Sbjct: 588 KKEQEEKDVLETFRKVQVNIPLLDAIKQVPQYAKFLKELCTKKKKFN 634

[Close]
BLAST of Lcy09g014960 vs. NCBI nr
Match: XP_017640097.1 (PREDICTED: uncharacterized protein LOC108481482 [Gossypium arboreum])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKR 50
           KKEKE+K+ LE FRKV VNI LL+AI+Q PRYA+FLK+ CT+KR
Sbjct: 112 KKEKEEKEILETFRKVEVNIPLLDAIKQIPRYAKFLKELCTRKR 155

[Close]
BLAST of Lcy09g014960 vs. NCBI nr
Match: XP_020424435.1 (uncharacterized protein LOC109950300 [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKRT 51
           KKE+  KD LE FRKV VNI LL+AIQQ PRYA+FLK+ CT KRT
Sbjct: 757 KKEQVSKDILETFRKVQVNIPLLDAIQQIPRYAKFLKELCTNKRT 801

[Close]
BLAST of Lcy09g014960 vs. NCBI nr
Match: KAB2609977.1 (S ribonuclease [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWC-TKKRTSNKK 55
           KKEK +KD LE+FRKV VNI LL+AI+Q P+YA+FLK+ C T+KR SNK+
Sbjct: 53  KKEKHEKDILEMFRKVQVNIPLLDAIKQVPKYAKFLKELCTTRKRASNKE 102

[Close]
BLAST of Lcy09g014960 vs. NCBI nr
Match: XP_020417999.1 (uncharacterized protein LOC109948709 [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 7   KKEKEDKDALEVFRKVLVNI-LLEAIQQFPRYARFLKKWCTKKRT 51
           KKE+  KD LE FRKV VNI LL+AIQQ PRYA+FLK+ CT KRT
Sbjct: 521 KKEQVSKDILETFRKVQVNIPLLDAIQQIPRYAKFLKELCTNKRT 565

The following BLAST results are available for this feature:
BLAST of Lcy09g014960 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g014960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P4PUR36.0e-0670.45uncharacterized protein LOC108481482 OS=Gossypium arboreum OX=29729 GN=LOC108481... [more]
A0A5N5G4797.9e-0666.00S ribonuclease OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039148 ... [more]
A0A1U8MAJ41.0e-0570.45uncharacterized protein LOC107900117 OS=Gossypium hirsutum OX=3635 GN=LOC1079356... [more]
A0A6P4P5K21.0e-0570.45uncharacterized protein LOC108473727 OS=Gossypium arboreum OX=29729 GN=LOC108473... [more]
A0A6P4N2L11.0e-0568.18uncharacterized protein LOC108466226 OS=Gossypium arboreum OX=29729 GN=LOC108466... [more]
BLAST of Lcy09g014960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024190405.19.5e-0665.96uncharacterized protein LOC112194390 [Rosa chinensis][more]
XP_017640097.11.2e-0570.45PREDICTED: uncharacterized protein LOC108481482 [Gossypium arboreum][more]
XP_020424435.11.6e-0571.11uncharacterized protein LOC109950300 [Prunus persica][more]
KAB2609977.11.6e-0566.00S ribonuclease [Pyrus ussuriensis x Pyrus communis][more]
XP_020417999.11.6e-0571.11uncharacterized protein LOC109948709 [Prunus persica][more]
BLAST of Lcy09g014960 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g014960.1Lcy09g014960.1mRNA