Lcy09g014220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g014220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr09: 16360482 .. 16360730 (-)
RNA-Seq Expression	Lcy09g014220
Synteny	Lcy09g014220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGAAGGATCCCTATAAACCTCAACAAGAACGACATATATGTATGGCACTTTGATAAATGTGGGAATTATTCAGTCAAATGCGGCTACAAACTTTTCATGAAGAACAAAATCAGTGTCGAATCAAGCAACAATAACATGAGTAAAGTCCGGAAAAATGTGTGGAAATTGAAGATTCCAATGAAGGTGAAGCATTTCTGTTGGAGAACCTTAAACGACTACATTCCTACCGGAATTAATGTTTAG

mRNA sequence

ATGATCAGAAGGATCCCTATAAACCTCAACAAGAACGACATATATGTATGGCACTTTGATAAATGTGGGAATTATTCAGTCAAATGCGGCTACAAACTTTTCATGAAGAACAAAATCAGTGTCGAATCAAGCAACAATAACATGAGTAAAGTCCGGAAAAATGTGTGGAAATTGAAGATTCCAATGAAGGTGAAGCATTTCTGTTGGAGAACCTTAAACGACTACATTCCTACCGGAATTAATGTTTAG

Coding sequence (CDS)

ATGATCAGAAGGATCCCTATAAACCTCAACAAGAACGACATATATGTATGGCACTTTGATAAATGTGGGAATTATTCAGTCAAATGCGGCTACAAACTTTTCATGAAGAACAAAATCAGTGTCGAATCAAGCAACAATAACATGAGTAAAGTCCGGAAAAATGTGTGGAAATTGAAGATTCCAATGAAGGTGAAGCATTTCTGTTGGAGAACCTTAAACGACTACATTCCTACCGGAATTAATGTTTAG

Protein sequence

MIRRIPINLNKNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKNVWKLKIPMKVKHFCWRTLNDYIPTGINV

Homology

[Close]

BLAST of Lcy09g014220 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1    MIRRIPI-NLNKNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKN-VWKL 60
            +I  +PI + N  D ++WH+DK GNYSV+ GYKL+M  K +  S++ N    + N +WKL
Sbjct: 1079 LILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKL 1138

Query: 61   KIPMKVKHFCWRTLNDYIPTGINV 83
             +P K+K F WR+ +++IPT  N+
Sbjct: 1139 TVPTKIKIFIWRSAHEHIPTAQNL 1162

[Close]

BLAST of Lcy09g014220 vs. ExPASy TrEMBL
Match: A0A803P8W5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 11   KNDIYVWHFDKCGNYSVKCGYKLFMK----NKISVESSNNNMSKVRKNVWKLKIPMKVKH 70
            + D  +WH  + G+Y+VK GY L       NK S  SSN N     K +W LK+P KVK+
Sbjct: 1263 REDRLIWHHSETGSYTVKSGYHLAESIDKINKSSTSSSNGNW---WKRLWALKLPKKVKN 1322

Query: 71   FCWRTLNDYIPTGINV 83
            F WR +ND +PT +N+
Sbjct: 1323 FVWRVINDALPTAVNL 1335

[Close]

BLAST of Lcy09g014220 vs. ExPASy TrEMBL
Match: A0A484KZP7 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS10222 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 2  IRRIPINL-NKNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKNVWKLKI 61
          I RIP+ L ++ D ++W  D  G YSVK GY++  + + S  ++NN+M      +WK+++
Sbjct: 16 ISRIPLGLYSREDAWIWRDDLKGLYSVKHGYRMMYEERWSGTTTNNDMWAF---IWKMQV 75

Query: 62 PMKVKHFCWRTLNDYIPTGINV 83
          P KV++F WR LND +P   N+
Sbjct: 76 PPKVRNFMWRALNDVLPVRANL 94

[Close]

BLAST of Lcy09g014220 vs. ExPASy TrEMBL
Match: A0A1R3J874 (Endonuclease/exonuclease/phosphatase OS=Corchorus capsularis OX=210143 GN=CCACVL1_07229 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.1e-08
Identity = 31/87 (35.63%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 2    IRRIPINLNK-NDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVR-----KNV 61
            I++IPI   + +D  +WHF + GNYSVK GYKL +    S++ +  + S V+     + +
Sbjct: 978  IKKIPIGSEQIDDRIIWHFTRDGNYSVKSGYKLLLSKTSSIDDNGQSSSGVQQAGYWRKI 1037

Query: 62   WKLKIPMKVKHFCWRTLNDYIPTGINV 83
            W L +  K+++F WR   + IPT  N+
Sbjct: 1038 WNLNVAPKIQNFIWRACKNVIPTKENL 1064

[Close]

BLAST of Lcy09g014220 vs. ExPASy TrEMBL
Match: A0A1S8ACU2 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.2e-08
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1   MIRRIPINLN-KNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKNV-WKL 60
           +I RI + ++ K D  +WH+DK GNYSVK GY++ M+ K     S+++ +  + NV W L
Sbjct: 231 LISRIQLPISPKPDQILWHYDKKGNYSVKSGYQIAMRIKHPARPSSSSSNLGQWNVIWSL 290

Query: 61  KIPMKVKHFCWRTLNDYIPTGINV 83
           ++P K+K F W+   +++PT  N+
Sbjct: 291 ELPEKIKIFMWKAARNFLPTSENL 314

[Close]

BLAST of Lcy09g014220 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1    MIRRIPI-NLNKNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKN-VWKL 60
            +I  +PI + N  D ++WH+DK GNYSV+ GYKL+M  K +  S++ N    + N +WKL
Sbjct: 1079 LILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKL 1138

Query: 61   KIPMKVKHFCWRTLNDYIPTGINV 83
             +P K+K F WR+ +++IPT  N+
Sbjct: 1139 TVPTKIKIFIWRSAHEHIPTAQNL 1162

[Close]

BLAST of Lcy09g014220 vs. NCBI nr
Match: XP_025692954.1 (uncharacterized protein LOC112795228 [Arachis hypogaea])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 1    MIRRIPINL-NKNDIYVWHFDKCGNYSVKCGY-------KLFMKNKISVESSNNNMSKVR 60
            +I R PI+L NKND YVW +   G YSV+ GY        L  + K++  S++ N+ +V 
Sbjct: 1068 LITRTPISLINKNDYYVWPYRNDGQYSVRTGYHAAKEEKDLKEETKLNKASTSQNLREVW 1127

Query: 61   KNVWKLKIPMKVKHFCWRTLNDYIPTGINV 83
            K +WKL +P KVK F W+ ++  +P  +N+
Sbjct: 1128 KTIWKLPVPGKVKMFLWKAVHGILPVNMNL 1157

[Close]

BLAST of Lcy09g014220 vs. NCBI nr
Match: XP_030926688.1 (uncharacterized protein LOC115953246 [Quercus lobata])

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 11  KNDIYVWHFDKCGNYSVKCGYKLFMK---NKISVESSNNNMSKVRKNVWKLKIPMKVKHF 70
           +ND YVW     G+YSV+  YK+ +      +   SS +N +KV K VW+++ P K++HF
Sbjct: 796 QNDTYVWPLTSNGDYSVRSAYKMLVSEVMTSVQASSSTDNSAKVWKGVWRIRAPNKIRHF 855

Query: 71  CWRTLNDYIPTGINV 83
            WR + D +PT  N+
Sbjct: 856 MWRAVKDSLPTKENL 870

[Close]

BLAST of Lcy09g014220 vs. NCBI nr
Match: VFQ68446.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 2  IRRIPINL-NKNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKNVWKLKI 61
          I RIP+ L ++ D ++W  D  G YSVK GY++  + + S  ++NN+M      +WK+++
Sbjct: 16 ISRIPLGLYSREDAWIWRDDLKGLYSVKHGYRMMYEERWSGTTTNNDMWAF---IWKMQV 75

Query: 62 PMKVKHFCWRTLNDYIPTGINV 83
          P KV++F WR LND +P   N+
Sbjct: 76 PPKVRNFMWRALNDVLPVRANL 94

[Close]

BLAST of Lcy09g014220 vs. NCBI nr
Match: XP_019197204.1 (PREDICTED: uncharacterized protein LOC109191089 [Ipomoea nil])

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-08
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 2   IRRIPINLNKNDIYVWHFDKCGNYSVKCGYKLFMKNKISVESSNNNMSKVRKNVWKLKIP 61
           I +IPI+L+ +D + W+ D  G YSVK GY+L + N       NN +     ++WKLKIP
Sbjct: 55  ILKIPISLDYDDTWYWYGDPRGEYSVKSGYRLIVGN----YQGNNGIFTKWLHLWKLKIP 114

Query: 62  MKVKHFCWRTLNDYIPTGINV 83
            K K F WR ++D +PT  N+
Sbjct: 115 PKWKMFLWRAVSDILPTTTNL 131

[Close]

BLAST of Lcy09g014220 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 7.2e-05
Identity = 21/71 (29.58%), Postives = 35/71 (49.30%), Query Frame = 0


Query: 11  KNDIYVWHFDKCGNYSVKCGYKLFM---KNKISVESSNNNMSKVRKNVWKLKIPMKVKHF 70
           K D  +W+++  G Y+V+ GY L        I   +  +    ++  +W L I  K+KHF
Sbjct: 115 KPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHF 174

Query: 71  CWRTLNDYIPT 79
            WR L+  + T
Sbjct: 175 LWRALSQALAT 185

The following BLAST results are available for this feature:

BLAST of Lcy09g014220 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g014220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	3.1e-11	42.86	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803P8W5	1.9e-08	43.42	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A484KZP7	1.9e-08	39.02	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS10222 PE=4 ...	[more]
A0A1R3J874	7.1e-08	35.63	Endonuclease/exonuclease/phosphatase OS=Corchorus capsularis OX=210143 GN=CCACVL...	[more]
A0A1S8ACU2	9.2e-08	38.10	Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]

BLAST of Lcy09g014220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	6.3e-11	42.86	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_025692954.1	1.0e-08	38.89	uncharacterized protein LOC112795228 [Arachis hypogaea]	[more]
XP_030926688.1	2.9e-08	38.67	uncharacterized protein LOC115953246 [Quercus lobata]	[more]
VFQ68446.1	3.8e-08	39.02	unnamed protein product [Cuscuta campestris]	[more]
XP_019197204.1	5.0e-08	41.98	PREDICTED: uncharacterized protein LOC109191089 [Ipomoea nil]	[more]

BLAST of Lcy09g014220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09510.1	7.2e-05	29.58	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 25..79 e-value: 5.6E-8 score: 33.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g014220.1	Lcy09g014220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0004518	nuclease activity