Lcy09g013620 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g013620
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	Chr09: 15199647 .. 15201940 (-)
RNA-Seq Expression	Lcy09g013620
Synteny	Lcy09g013620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGCTCTTCACGAACAAGACTATAAGAGGTCGTTTCTTTCAGGGTTTGTCTTTCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAGTGAGTAACAAGCCTTCGATCATTATCTCTTCTTTCGGATTCTCCTTGATTTCCCCAATTACCACATAGATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGTATTCAACTTGTAAGTATTTTAAAAGGTTGGTTCCCATGAAGGACTCCATTCATCCTTTCTTTCTGCGTTTTTATTGGGGTTTTGACACAATCTTTTCTGGTAGGTCAAATTTTTTAATGGAACCAAATAATCGGAGACCTGCCCAAGGCAGAGAACCTTTCAGCGCTGCCGGAGGTCCCCAATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCACGATGCTCGACAACGAATTGTTGAGAAGATGTATGATTTCTTACTTTTTTTTTATTGCTTTTCGATCTACCATTATATATTATTTGAGAAAAGTGTTTGAGCTCTTATAACTTTTTGTTTCATAGTTTATTGCTTAGGTATAGTTACTCTGGGATGGTTTTGTCAAGTAAACTATGAACAGAAAAACTTTGGAAATATAGAACTATCTTCGACCTTTTTCTTAGATTTTGGGTATAACTGATAGATGCGAAAACAGTTCGTTAAAGATAAGAAGCATAAGTTATTTGTCGCAGTATGGATCTTGTTGAATTTTTCTTGAGCGTTCCGACGTACATTCCTTCAGAATATCTAATATTTTGAATCATGGACATGGATTACTCTGTGGTTTTCCTTTTGCGAACAGCTTCCCATGCTTTTTGGTTTAATAAACTAGTTAGTCATTATGTTTTCCATTTTTATGTTAGAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGCTGAAAGGTTTGAGGAAAAGGTTTATACTGGCGCCACCAGTCAGGTATTTCCTTTTCACTTTGTTATATTTTAAATCAAGGAATGTAAGAATAAACGTATTCTCATTTATGTTTATCCCATTTGCTGATAACAACAAGCTTCCAATTTGATTTGGTGCCTGAGATTTAGTTGTGTACTGAAGCATACTTCTCTATAACGACTTGTTCATGTGGACTTTTAATAAATCCGGTTTTAGTATGTTATGTATTCTTGTACTAAATACAACATTGTTTTAGCGATCTCTTGAGTACTCTCACCAATTCTATTATTATCTTCTGATTTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGACTATGGTGCCTGTCAATGAGCCTCTGGATTCTGGTAATGCATCAACAGACAATCTGCGACTATGTTGTACATGATGAAAATTTCACCAGCATTTTTTAAGCCAATTTGTGAATGAATTTCTTGTTATAGAGTTTCTGGTTTCTCGGTTCCCTTCTTAAATATACAAGTAGGAGTTAGTCTACAACGAATTTCTTACTGTGTTGTGTGTGACGCATAATTCATGTGTTTGGAGTGCATTGTATGACGCACAATTCATGTGTTTGGAGTGCATTGTATGACGCACAATTCATCTCATCAATTCATGTGTTAAGAGTGCATTGGATGACGCACAATTCATGTGTTAAGAGTGCATTGGATGACGCACAATTCATGTGTTAAGAGTGCATTACATGACGTGAAAATCATGTTTCGGGTAGAGGTGCGTTGCATGACATGAAAATCATGTTTCGGGTAGAGGTGCGTTGCATGATGCGGGGTGAATGTGTTGAGTGCAAAGCATGTTGCATGAATTCATGTGTTGTCAGGTATAGTTGTTGTTTGCTTAAGTATGCTAGCGGTATTCTCGTGTTGTTGGTTTCTGAATAAGCGTTGAATGTTTGTGAGAAGTATGATGATTGTGTTATTTGTTGCTTGATGGCTCACCCAGTGTGAGCTACTCACCAATATCATGGTTGTACTAACCCTGTTTCTCTTTTCTCCCAAACTATACTTTGCAGATGAAGAGGATCATTATGAGCCCAATGATGCTAAGGTGGAGACTCGTGAGGAATGACTGACCTGAGTAGTTATCTCTTTATTTTACTTTTCTTTCTTGAGATAAGATCCTAGTTTCTCGTTTTTAGACTTTAGGTGGATTTAGACTTTTGGCTCTTTTGTAATAATTTTAAATCGTGAATCAGT

mRNA sequence

AGTGCTCTTCACGAACAAGACTATAAGAGGTCGTTTCTTTCAGGGTTTGTCTTTCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAGTGAGTAACAAGCCTTCGATCATTATCTCTTCTTTCGGATTCTCCTTGATTTCCCCAATTACCACATAGATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGTATTCAACTTGTAAGTATTTTAAAAGGTCAAATTTTTTAATGGAACCAAATAATCGGAGACCTGCCCAAGGCAGAGAACCTTTCAGCGCTGCCGGAGGTCCCCAATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCACGATGCTCGACAACGAATTGTTGAGAAGATAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGCTGAAAGGTTTGAGGAAAAGGTTTATACTGGCGCCACCAGTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGACTATGGTGCCTGTCAATGAGCCTCTGGATTCTGATGAAGAGGATCATTATGAGCCCAATGATGCTAAGGTGGAGACTCGTGAGGAATGACTGACCTGAGTAGTTATCTCTTTATTTTACTTTTCTTTCTTGAGATAAGATCCTAGTTTCTCGTTTTTAGACTTTAGGTGGATTTAGACTTTTGGCTCTTTTGTAATAATTTTAAATCGTGAATCAGT

Coding sequence (CDS)

ATGGAACCAAATAATCGGAGACCTGCCCAAGGCAGAGAACCTTTCAGCGCTGCCGGAGGTCCCCAATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCACGATGCTCGACAACGAATTGTTGAGAAGATAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGCTGAAAGGTTTGAGGAAAAGGTTTATACTGGCGCCACCAGTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGACTATGGTGCCTGTCAATGAGCCTCTGGATTCTGATGAAGAGGATCATTATGAGCCCAATGATGCTAAGGTGGAGACTCGTGAGGAATGA

Protein sequence

MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSHDARQRIVEKIMETLKRHLPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLTMVPVNEPLDSDEEDHYEPNDAKVETREE

Homology

[Close]

BLAST of Lcy09g013620 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-20
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP+         G P   TG         DWR+    D+RQ+IV KIMETLK+H
Sbjct: 1   MDNNNWRPSLPN------GEPAMDTG---------DWRTQLPPDSRQKIVNKIMETLKKH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLTM 102
           LP  GP+G++ELR+IA RFEEK+++GA +Q+DYLRKIS+KMLTM
Sbjct: 61  LPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTM 89

[Close]

BLAST of Lcy09g013620 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 76/130 (58.46%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIEA DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 75/130 (57.69%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIE  DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEDGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. ExPASy TrEMBL
Match: A0A6J1JMY4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 73/130 (56.15%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RPAQG E                +G++A DWRS    D+R RIV KIMETLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 114
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]

BLAST of Lcy09g013620 vs. ExPASy TrEMBL
Match: A0A6J1JM75 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 73/130 (56.15%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RPAQG E                +G++A DWRS    D+R RIV KIMETLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 114
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]

BLAST of Lcy09g013620 vs. ExPASy TrEMBL
Match: A0A6J1JK72 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 73/130 (56.15%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RPAQG E                +G++A DWRS    D+R RIV KIMETLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 114
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]

BLAST of Lcy09g013620 vs. NCBI nr
Match: XP_038887807.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-26
Identity = 77/130 (59.23%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIEA DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDANNWRPTQGAEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSELRKIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGQEGLSELRKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQPHMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. NCBI nr
Match: XP_038887614.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-26
Identity = 77/130 (59.23%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIEA DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDANNWRPTQGAEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSELRKIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGQEGLSELRKIAIRFEEKIYTAATSQSDYLRKISLKMLTMETKSQPHMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 76/130 (58.46%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIEA DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 76/130 (58.46%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIEA DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 76/130 (58.46%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP QG EP                GIEA DWRS    D+RQRIV KIMETLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 111
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]

BLAST of Lcy09g013620 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-21
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRSH---DARQRIVEKIMETLKRH 60
           M+ NN RP+         G P   TG         DWR+    D+RQ+IV KIMETLK+H
Sbjct: 1   MDNNNWRPSLPN------GEPAMDTG---------DWRTQLPPDSRQKIVNKIMETLKKH 60

Query: 61  LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLTM 102
           LP  GP+G++ELR+IA RFEEK+++GA +Q+DYLRKIS+KMLTM
Sbjct: 61  LPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTM 89

[Close]

BLAST of Lcy09g013620 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 7.8e-14
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 36  DWRSH---DARQRIVEKIMETLKRHLPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLR 95
           DWR+     +R RIV KIMET  + LP   P+G +ELRKIA RFEEK++  A++Q++YLR
Sbjct: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65

Query: 96  KISLKMLTM 102
           +I +KML M
Sbjct: 66  QICMKMLNM 74

[Close]

BLAST of Lcy09g013620 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 7.8e-14
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 36  DWRSH---DARQRIVEKIMETLKRHLPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLR 95
           DWR+     +R RIV KIMET  + LP   P+G +ELRKIA RFEEK++  A++Q++YLR
Sbjct: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65

Query: 96  KISLKMLTM 102
           +I +KML M
Sbjct: 66  QICMKMLNM 74

The following BLAST results are available for this feature:

BLAST of Lcy09g013620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	2.4e-20	52.88	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of Lcy09g013620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI15	6.9e-26	58.46	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1HR60	3.4e-25	57.69	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1JMY4	7.6e-25	56.15	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1JM75	7.6e-25	56.15	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1JK72	7.6e-25	56.15	mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucur...	[more]

BLAST of Lcy09g013620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887807.1	3.7e-26	59.23	mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]	[more]
XP_038887614.1	4.9e-26	59.23	mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]	[more]
KAG6571702.1	1.4e-25	58.46	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]
XP_022963528.1	1.4e-25	58.46	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]
XP_023553730.1	1.4e-25	58.46	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]

BLAST of Lcy09g013620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	1.7e-21	52.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.1	7.8e-14	53.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.2	7.8e-14	53.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 39..101 e-value: 3.2E-29 score: 100.8
IPR036529	Coactivator CBP, KIX domain superfamily	GENE3D	1.10.246.20	Coactivator CBP, KIX domain	coord: 37..106 e-value: 3.8E-20 score: 73.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..35
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 27..101
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 27..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g013620.1	Lcy09g013620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity