Lcy09g010660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g010660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr09: 11414184 .. 11415014 (+)
RNA-Seq Expression	Lcy09g010660
Synteny	Lcy09g010660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTGCTTTTCGGATTGAACAATGATGCTTGGAAGCCTATCGACTATTGGGTTTGGATGATCGAGAATCTTATAGAGAAGGAGCTAGAAGCTGCTATCCTAATTATGTGGGAGATATGGAATCACAGGAATAATCTCTTGCACAACACAGCCAGTCCAAGCCAAAATTCCATTATCAGAGCAGTGGATTCTAAAATTTCAGAGGGAGATGATTACCTCAATTCCGTCTCTGCTATGGGTCTACCAAGATTGAAGACCCAGCTGAGTCAAGCCCCTCGGATTCCTCCGCATCCCGATTCGTGGAGGCTCAACGTTGACGCCTCCCGTAACGATCATAATAGCATTGGTGGAGTGGGTTGGATCTGGCGTGACTCCTCAGGTTCTTCCATCTGCGAGGGGTTCACAAGAATTAAGGGTAGATGGTCTATCAAGATGCTGGAGATGAAAGCGATTCTCGAAGGGTTGCATAGCTTACCAACCATTCGGGCTTCACGCGCTAACCTGGATATTCCGCCAATAGTGGTGATGTATGACGCCATTGGCGTCATCAATCTGCTGAACAAATCTGAAGCAGACCTTTCAGAAATCTCCTTTTTGGTTGCCGAGATCGATCGTCTGGTTGCTGAGGTCGAGAGAATCTCTTTCGTCCATTGCCCGCGCTCGCTGAATGTTGAAGCTCACAATCTCGCGCGCCTAGCTGCTTTCAGTTTTTTGGAGGGCTTTAGATGTCTTTTGGATACTTCTTCCAATTCGGAAGGAGGTTTAGTTTTGTTGGGCCGGTTTGGGCCAGAATTTTTCTCCCCCAGTTTTATCGGGGCTGTTGTTTAG

mRNA sequence

ATGAATGTGCTTTTCGGATTGAACAATGATGCTTGGAAGCCTATCGACTATTGGGTTTGGATGATCGAGAATCTTATAGAGAAGGAGCTAGAAGCTGCTATCCTAATTATGTGGGAGATATGGAATCACAGGAATAATCTCTTGCACAACACAGCCAGTCCAAGCCAAAATTCCATTATCAGAGCAGTGGATTCTAAAATTTCAGAGGGAGATGATTACCTCAATTCCGTCTCTGCTATGGGTCTACCAAGATTGAAGACCCAGCTGAGTCAAGCCCCTCGGATTCCTCCGCATCCCGATTCGTGGAGGCTCAACGTTGACGCCTCCCGTAACGATCATAATAGCATTGGTGGAGTGGGTTGGATCTGGCGTGACTCCTCAGGTTCTTCCATCTGCGAGGGGTTCACAAGAATTAAGGGTAGATGGTCTATCAAGATGCTGGAGATGAAAGCGATTCTCGAAGGGTTGCATAGCTTACCAACCATTCGGGCTTCACGCGCTAACCTGGATATTCCGCCAATAGTGGTGATGTATGACGCCATTGGCGTCATCAATCTGCTGAACAAATCTGAAGCAGACCTTTCAGAAATCTCCTTTTTGGTTGCCGAGATCGATCGTCTGGTTGCTGAGGTCGAGAGAATCTCTTTCGTCCATTGCCCGCGCTCGCTGAATGTTGAAGCTCACAATCTCGCGCGCCTAGCTGCTTTCAGTTTTTTGGAGGGCTTTAGATGTCTTTTGGATACTTCTTCCAATTCGGAAGGAGGTTTAGTTTTGTTGGGCCGGTTTGGGCCAGAATTTTTCTCCCCCAGTTTTATCGGGGCTGTTGTTTAG

Coding sequence (CDS)

ATGAATGTGCTTTTCGGATTGAACAATGATGCTTGGAAGCCTATCGACTATTGGGTTTGGATGATCGAGAATCTTATAGAGAAGGAGCTAGAAGCTGCTATCCTAATTATGTGGGAGATATGGAATCACAGGAATAATCTCTTGCACAACACAGCCAGTCCAAGCCAAAATTCCATTATCAGAGCAGTGGATTCTAAAATTTCAGAGGGAGATGATTACCTCAATTCCGTCTCTGCTATGGGTCTACCAAGATTGAAGACCCAGCTGAGTCAAGCCCCTCGGATTCCTCCGCATCCCGATTCGTGGAGGCTCAACGTTGACGCCTCCCGTAACGATCATAATAGCATTGGTGGAGTGGGTTGGATCTGGCGTGACTCCTCAGGTTCTTCCATCTGCGAGGGGTTCACAAGAATTAAGGGTAGATGGTCTATCAAGATGCTGGAGATGAAAGCGATTCTCGAAGGGTTGCATAGCTTACCAACCATTCGGGCTTCACGCGCTAACCTGGATATTCCGCCAATAGTGGTGATGTATGACGCCATTGGCGTCATCAATCTGCTGAACAAATCTGAAGCAGACCTTTCAGAAATCTCCTTTTTGGTTGCCGAGATCGATCGTCTGGTTGCTGAGGTCGAGAGAATCTCTTTCGTCCATTGCCCGCGCTCGCTGAATGTTGAAGCTCACAATCTCGCGCGCCTAGCTGCTTTCAGTTTTTTGGAGGGCTTTAGATGTCTTTTGGATACTTCTTCCAATTCGGAAGGAGGTTTAGTTTTGTTGGGCCGGTTTGGGCCAGAATTTTTCTCCCCCAGTTTTATCGGGGCTGTTGTTTAG

Protein sequence

MNVLFGLNNDAWKPIDYWVWMIENLIEKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSAMGLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKGRWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFLVAEIDRLVAEVERISFVHCPRSLNVEAHNLARLAAFSFLEGFRCLLDTSSNSEGGLVLLGRFGPEFFSPSFIGAVV

Homology

[Close]

BLAST of Lcy09g010660 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 0


Query: 21  MIENLIEKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSAM 80
           M++   +++L+  ++  W IWNHRN ++      S +++I+ +   ++E   Y +  S  
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTE-SSYQSETSLS 60

Query: 81  GLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKG 140
            L   KT  ++    PP    W LN DAS +D    GG+GWI R   G  +  G   ++ 
Sbjct: 61  MLH--KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEA 120

Query: 141 RWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFL 200
             ++K+LE  AILEGL +L  +   R      P+ +  D+  V +LLN+   DL++  ++
Sbjct: 121 CNNVKLLEASAILEGLRNLTNLGVLR------PLHIETDSAEVESLLNRKREDLTKTGWV 180

Query: 201 VAEIDRLVAEVERISFVHCPRSLNVEAHNLARLAA 236
           V EI  L    E ++F    R  N  AH+LA+ A+
Sbjct: 181 VEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lcy09g010660 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15
Identity = 66/214 (30.84%), Postives = 102/214 (47.66%), Query Frame = 0


Query: 27  EKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSA------M 86
           E+E   +++I W+IW  RN  +     P    I  A+D  I        ++        +
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDL 65

Query: 87  GLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKG 146
            L R     + A   PP  +SW+LN +A+     + GG+GWI RD  G  I      I+ 
Sbjct: 66  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 125

Query: 147 RWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFL 206
             +I  LE+ AI EGL +   IR         PI +  D++  I+LL++   D +EI +L
Sbjct: 126 ERNITYLEVMAICEGLRA---IRQEHCR----PIHLESDSLEAIHLLHRQCQDQTEIIWL 185

Query: 207 VAEIDRLVAEVERISFVHCPRSLNVEAHNLARLA 235
           + EI +++ ++E +S  H  R  N  AH LAR A
Sbjct: 186 LEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy09g010660 vs. ExPASy TrEMBL
Match: A0A4Q3DBE2 (Reverse transcriptase-like protein (Fragment) OS=Rickettsiaceae bacterium OX=2023360 GN=EOP33_09975 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 61/205 (29.76%), Postives = 102/205 (49.76%), Query Frame = 0


Query: 31  EAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSAMGLPRLKTQLS 90
           E  I I+WE+WNHRNN+L   ++ SQ  +++   S + E        + +G     T+++
Sbjct: 71  ELFITIIWELWNHRNNVLAGRSAWSQPQLVQWTVSFLEE-----YRAATVGETPTSTRVT 130

Query: 91  QAPR-IPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKGRWSIKMLEM 150
             PR  PP   +  +NVDA+        GVG I RD +G  I      +   +S ++ E 
Sbjct: 131 TTPRWTPPRDGTLSINVDAALARDRGGFGVGCIVRDHTGEVIASQTLFLARGFSPQLAEA 190

Query: 151 KAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFLVAEIDRLVA 210
            A+L+G+  + ++   RA        +  D +GV+ ++++     +E+  ++  I R V 
Sbjct: 191 YAVLQGIELVRSVGGRRAE-------IQSDCLGVVRMIDEGVTPATELGTILHRIFREVR 250

Query: 211 EVERISFVHCPRSLNVEAHNLARLA 235
           E+E    +H  R  NV AHNLAR A
Sbjct: 251 ELEVFRIMHISRLCNVAAHNLARYA 263

[Close]

BLAST of Lcy09g010660 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 68/215 (31.63%), Postives = 105/215 (48.84%), Query Frame = 0


Query: 27  EKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKI--SEG-DDYLNSVSA---M 86
           E+E   +++I W+IW  RN  +          I   +D  I  S G D  L   SA   +
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDL 65

Query: 87  GLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKG 146
            L R     + A   PP  +SW+LN DA+     + GG+GWI RD  G  I      I+ 
Sbjct: 66  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 125

Query: 147 RWSIKMLEMKAILEGLHSLPTIRASRANLD-IPPIVVMYDAIGVINLLNKSEADLSEISF 206
             +I  LE+ AI EGL ++          +   PI +  D++  I+LL++   D +EI +
Sbjct: 126 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 185

Query: 207 LVAEIDRLVAEVERISFVHCPRSLNVEAHNLARLA 235
           L+ EI +++ +++ +S  H  R  N  AH+LAR A
Sbjct: 186 LLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy09g010660 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-14
Identity = 66/225 (29.33%), Postives = 103/225 (45.78%), Query Frame = 0


Query: 15  IDYWVWMIENLIEKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRA-VDSKISEGDDY 74
           +DY+ W+  +  + + ++ ++++W IW +RN ++H+T     +  IRA  +SKI E    
Sbjct: 1   MDYFDWIWRDSDQYKRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTN 60

Query: 75  LNSVSAMGLPRLKTQLSQAPR----IPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGS 134
           L          L  +    PR     PP    W+LNVDA+  D    GG+GWI RDS G 
Sbjct: 61  LGG-------NLNMEDKNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGR 120

Query: 135 SICEGFTRIKGRWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNK 194
            I                 M   L+ L    T+ A         I +  D + V+N++NK
Sbjct: 121 FI-----------------MAECLKALSQSLTLEAG------IKIEMESDCLEVVNIINK 180

Query: 195 SEADLSEISFLVAEIDRLVAEVERISFVHCPRSLNVEAHNLARLA 235
           S   L+E+S +V +I + +  +    F H P   N  AH +AR A
Sbjct: 181 SSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRA 195

[Close]

BLAST of Lcy09g010660 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-17
Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 0


Query: 21  MIENLIEKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSAM 80
           M++   +++L+  ++  W IWNHRN ++      S +++I+ +   ++E   Y +  S  
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTE-SSYQSETSLS 60

Query: 81  GLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKG 140
            L   KT  ++    PP    W LN DAS +D    GG+GWI R   G  +  G   ++ 
Sbjct: 61  MLH--KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEA 120

Query: 141 RWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFL 200
             ++K+LE  AILEGL +L  +   R      P+ +  D+  V +LLN+   DL++  ++
Sbjct: 121 CNNVKLLEASAILEGLRNLTNLGVLR------PLHIETDSAEVESLLNRKREDLTKTGWV 180

Query: 201 VAEIDRLVAEVERISFVHCPRSLNVEAHNLARLAA 236
           V EI  L    E ++F    R  N  AH+LA+ A+
Sbjct: 181 VEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lcy09g010660 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-15
Identity = 66/214 (30.84%), Postives = 102/214 (47.66%), Query Frame = 0


Query: 27  EKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSA------M 86
           E+E   +++I W+IW  RN  +     P    I  A+D  I        ++        +
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDL 65

Query: 87  GLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKG 146
            L R     + A   PP  +SW+LN +A+     + GG+GWI RD  G  I      I+ 
Sbjct: 66  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 125

Query: 147 RWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFL 206
             +I  LE+ AI EGL +   IR         PI +  D++  I+LL++   D +EI +L
Sbjct: 126 ERNITYLEVMAICEGLRA---IRQEHCR----PIHLESDSLEAIHLLHRQCQDQTEIIWL 185

Query: 207 VAEIDRLVAEVERISFVHCPRSLNVEAHNLARLA 235
           + EI +++ ++E +S  H  R  N  AH LAR A
Sbjct: 186 LEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy09g010660 vs. NCBI nr
Match: RYE02783.1 (reverse transcriptase-like protein, partial [Rickettsiaceae bacterium])

HSP 1 Score: 92.0 bits (227), Expect = 8.4e-15
Identity = 61/205 (29.76%), Postives = 102/205 (49.76%), Query Frame = 0


Query: 31  EAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDYLNSVSAMGLPRLKTQLS 90
           E  I I+WE+WNHRNN+L   ++ SQ  +++   S + E        + +G     T+++
Sbjct: 71  ELFITIIWELWNHRNNVLAGRSAWSQPQLVQWTVSFLEE-----YRAATVGETPTSTRVT 130

Query: 91  QAPR-IPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKGRWSIKMLEM 150
             PR  PP   +  +NVDA+        GVG I RD +G  I      +   +S ++ E 
Sbjct: 131 TTPRWTPPRDGTLSINVDAALARDRGGFGVGCIVRDHTGEVIASQTLFLARGFSPQLAEA 190

Query: 151 KAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEADLSEISFLVAEIDRLVA 210
            A+L+G+  + ++   RA        +  D +GV+ ++++     +E+  ++  I R V 
Sbjct: 191 YAVLQGIELVRSVGGRRAE-------IQSDCLGVVRMIDEGVTPATELGTILHRIFREVR 250

Query: 211 EVERISFVHCPRSLNVEAHNLARLA 235
           E+E    +H  R  NV AHNLAR A
Sbjct: 251 ELEVFRIMHISRLCNVAAHNLARYA 263

[Close]

BLAST of Lcy09g010660 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-14
Identity = 68/215 (31.63%), Postives = 105/215 (48.84%), Query Frame = 0


Query: 27  EKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKI--SEG-DDYLNSVSA---M 86
           E+E   +++I W+IW  RN  +          I   +D  I  S G D  L   SA   +
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDL 65

Query: 87  GLPRLKTQLSQAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKG 146
            L R     + A   PP  +SW+LN DA+     + GG+GWI RD  G  I      I+ 
Sbjct: 66  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 125

Query: 147 RWSIKMLEMKAILEGLHSLPTIRASRANLD-IPPIVVMYDAIGVINLLNKSEADLSEISF 206
             +I  LE+ AI EGL ++          +   PI +  D++  I+LL++   D +EI +
Sbjct: 126 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 185

Query: 207 LVAEIDRLVAEVERISFVHCPRSLNVEAHNLARLA 235
           L+ EI +++ +++ +S  H  R  N  AH+LAR A
Sbjct: 186 LLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy09g010660 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 9.3e-14
Identity = 66/225 (29.33%), Postives = 103/225 (45.78%), Query Frame = 0


Query: 15  IDYWVWMIENLIEKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRA-VDSKISEGDDY 74
           +DY+ W+  +  + + ++ ++++W IW +RN ++H+T     +  IRA  +SKI E    
Sbjct: 1   MDYFDWIWRDSDQYKRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTN 60

Query: 75  LNSVSAMGLPRLKTQLSQAPR----IPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGS 134
           L          L  +    PR     PP    W+LNVDA+  D    GG+GWI RDS G 
Sbjct: 61  LGG-------NLNMEDKNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGR 120

Query: 135 SICEGFTRIKGRWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNK 194
            I                 M   L+ L    T+ A         I +  D + V+N++NK
Sbjct: 121 FI-----------------MAECLKALSQSLTLEAG------IKIEMESDCLEVVNIINK 180

Query: 195 SEADLSEISFLVAEIDRLVAEVERISFVHCPRSLNVEAHNLARLA 235
           S   L+E+S +V +I + +  +    F H P   N  AH +AR A
Sbjct: 181 SSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRA 195

[Close]

BLAST of Lcy09g010660 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-10
Identity = 54/228 (23.68%), Postives = 100/228 (43.86%), Query Frame = 0


Query: 17  YWVWMIEN---LIEKELEAAILIMWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDY 76
           YWV+ + N     EK  +    ++W +W +RN L+      +   ++R  +  + E    
Sbjct: 341 YWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIR 400

Query: 77  LNSVSAMGLPRLKTQLSQAPRIPPHPDSW-RLNVDASRNDHNSIGGVGWIWRDSSGSSIC 136
             + S    P++        R PPH   W + N DA+ N  N   G+GW+ R+  G    
Sbjct: 401 TEAESCGTKPQVNRSSCGRWRPPPH--QWVKCNTDATWNRDNERCGIGWVLRNEKG---- 460

Query: 137 EGFTRIKGRWSIKMLEMKAILEG-LHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSE 196
                +K   +  + ++K++LE  L ++     S +      ++   D+  +I +LN  E
Sbjct: 461 ----EVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE 520

Query: 197 ADLSEISFLVAEIDRLVAEVERISFVHCPRSLNVEAHNLARLAAFSFL 240
                +   + ++ RL+++   + FV  PR  N  A  +AR  + SFL
Sbjct: 521 I-WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR-ESLSFL 556

[Close]

BLAST of Lcy09g010660 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-09
Identity = 53/220 (24.09%), Postives = 91/220 (41.36%), Query Frame = 0


Query: 17  YWVWMIENLIEKELEAAILI---MWEIWNHRNNLLHNTASPSQNSIIRAVDSKISEGDDY 76
           YWV  +E  I K  +   L+   +W +W  RN L+          ++R       E    
Sbjct: 58  YWVLNLEVEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTR 117

Query: 77  LNSVSAMGLPRLKTQLSQAPRIPPHPDSW-RLNVDASRNDHNSIGGVGWIWRDSSGSSIC 136
                    P+++  LS   + PP+   W + N DA+    N   G+GWI R+ SG  + 
Sbjct: 118 RELEGKASGPQVERNLSVQWKAPPY--QWVKCNTDATWQLENPRCGIGWILRNESGGVLW 177

Query: 137 EGFTRIKGRWSIKMLEMKAILEGLHSLPTIRASRANLDIPPIVVMYDAIGVINLLNKSEA 196
            G   +    ++   E++A+   + ++      R       I+   DA  ++NLLN S+ 
Sbjct: 178 MGARALPRTKNVLEAELEALRWAVLTMSRFNYKR-------IIFESDAQALVNLLN-SDD 237

Query: 197 DLSEISFLVAEIDRLVAEVERISFVHCPRSLNVEAHNLAR 233
               +   + +I +L+   E + F   PR  N  A  +AR
Sbjct: 238 FWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIAR 267

[Close]

BLAST of Lcy09g010660 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 35/123 (28.46%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 36  IMWEIWNHRNNLLHN-TASPSQNSIIRAVDSKISEGDDYLNSVSAMGL----PRLKTQLS 95
           +MW IW   N+L+ N T +  Q ++  A++      D+ + +    G     P   T+ S
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWS 106

Query: 96  QAPRIPPHPDSWRLNVDASRNDHNSIGGVGWIWRDSSGSSICEGFTRIKGRWSIKMLEMK 154
                PP  D  + N DAS ++ N++ G+GWI R+S G+ I  G  + +GR + +  E  
Sbjct: 107 -----PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECS 164

The following BLAST results are available for this feature:

BLAST of Lcy09g010660 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g010660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	2.5e-17	30.70	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.4e-15	30.84	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A4Q3DBE2	4.1e-15	29.76	Reverse transcriptase-like protein (Fragment) OS=Rickettsiaceae bacterium OX=202...	[more]
A0A6J1DSV1	2.0e-14	31.63	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D4B6	4.5e-14	29.33	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Lcy09g010660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	5.2e-17	30.70	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	2.9e-15	30.84	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
RYE02783.1	8.4e-15	29.76	reverse transcriptase-like protein, partial [Rickettsiaceae bacterium]	[more]
XP_022156777.1	4.2e-14	31.63	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022148549.1	9.3e-14	29.33	uncharacterized protein LOC111017181 [Momordica charantia]	[more]

BLAST of Lcy09g010660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.0e-10	23.68	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	3.3e-09	24.09	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	1.4e-07	28.46	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 102..237 e-value: 7.0E-15 score: 57.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 105..234 e-value: 8.0E-17 score: 61.2
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 95..234
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 95..234
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 104..232 e-value: 7.5918E-18 score: 75.4284
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 101..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g010660.1	Lcy09g010660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity