Lcy09g010510 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g010510
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr09: 11203805 .. 11204308 (-)
RNA-Seq Expression	Lcy09g010510
Synteny	Lcy09g010510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATATGAAGCCAAAGGAAACCCCATAATTGGCACTAAATTAAAAGATAAGAACAAAAATGAGGTCTTCAATGGCTTCTCTCCTTTTCGCCATTTTAGCAGCAGTAATCCTCTATTGGAGCTTGCAGTCCGCCGTCGTCAACCACTCTCCTCCGATCAAAAAATTTCATTACTCACTGTCTTCTCTTTACCATAGAAAAACTCTTCCACCACCGCCGCCAGGGTTTCAATGGCCACCCGATCACGTCCCAAAGTCGCCGCCGCCCCCCTTCTAGATATGTGTCTACATGTAATATTTATACATATTGAAGGTAACCGCGTTCAGAAATTTAAATTTTTCTACTTTAATTTTCTTTTTGTTTTAGAAAGAAAAATCAATTTATACTATGATGTTTGAGATGTATAAATTAAAATCTCTATTTGTTACTTTTTTTTACAATATGTGGGGTGAGGGATTCGAACCACAGATGTTTTGGTTATCAATTGAGCTACACTTATATTGG

mRNA sequence

ATTTATATGAAGCCAAAGGAAACCCCATAATTGGCACTAAATTAAAAGATAAGAACAAAAATGAGGTCTTCAATGGCTTCTCTCCTTTTCGCCATTTTAGCAGCAGTAATCCTCTATTGGAGCTTGCAGTCCGCCGTCGTCAACCACTCTCCTCCGATCAAAAAATTTCATTACTCACTGTCTTCTCTTTACCATAGAAAAACTCTTCCACCACCGCCGCCAGGGTTTCAATGGCCACCCGATCACGTCCCAAAGTCGCCGCCGCCCCCCTTCTAGATATGTGTCTACATGTAATATTTATACATATTGAAGGTAACCGCGTTCAGAAATTTAAATTTTTCTACTTTAATTTTCTTTTTGTTTTAGAAAGAAAAATCAATTTATACTATGATGTTTGAGATGTATAAATTAAAATCTCTATTTGTTACTTTTTTTTACAATATGTGGGGTGAGGGATTCGAACCACAGATGTTTTGGTTATCAATTGAGCTACACTTATATTGG

Coding sequence (CDS)

ATGAGGTCTTCAATGGCTTCTCTCCTTTTCGCCATTTTAGCAGCAGTAATCCTCTATTGGAGCTTGCAGTCCGCCGTCGTCAACCACTCTCCTCCGATCAAAAAATTTCATTACTCACTGTCTTCTCTTTACCATAGAAAAACTCTTCCACCACCGCCGCCAGGGTTTCAATGGCCACCCGATCACGTCCCAAAGTCGCCGCCGCCCCCCTTCTAG

Protein sequence

MRSSMASLLFAILAAVILYWSLQSAVVNHSPPIKKFHYSLSSLYHRKTLPPPPPGFQWPPDHVPKSPPPPF

Homology

[Close]

BLAST of Lcy09g010510 vs. ExPASy TrEMBL
Match: A0A0A0K8T1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G059230 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 1  MRSSMASLLFAILAAVILY-WSLQSAVVNHSPPIKKFHYSLSSLYHRKTL---------- 60
          M+SSM+SLLFAIL  ++L   S  S V  HS P K  H      +HRK L          
Sbjct: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRH---RHRHHRKYLPPPPLCGTVA 60

Query: 61 ---PPPPPGFQWPPDHVPKSPPPPF 72
             PPPPP FQWPP+HV KSPPPPF
Sbjct: 61 RPPPPPPPKFQWPPNHVKKSPPPPF 82

[Close]

BLAST of Lcy09g010510 vs. NCBI nr
Match: KGN46160.1 (hypothetical protein Csa_005439 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 1  MRSSMASLLFAILAAVILY-WSLQSAVVNHSPPIKKFHYSLSSLYHRKTL---------- 60
          M+SSM+SLLFAIL  ++L   S  S V  HS P K  H      +HRK L          
Sbjct: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRH---RHRHHRKYLPPPPLCGTVA 60

Query: 61 ---PPPPPGFQWPPDHVPKSPPPPF 72
             PPPPP FQWPP+HV KSPPPPF
Sbjct: 61 RPPPPPPPKFQWPPNHVKKSPPPPF 82

The following BLAST results are available for this feature:

BLAST of Lcy09g010510 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g010510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8T1	7.5e-06	50.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G059230 PE=4 SV=1	[more]

BLAST of Lcy09g010510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46160.1	1.5e-05	50.59	hypothetical protein Csa_005439 [Cucumis sativus]	[more]

BLAST of Lcy09g010510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g010510.1	Lcy09g010510.1	mRNA