Lcy09g008840 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g008840
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H-like superfamily protein
Location	Chr09: 8490867 .. 8491778 (+)
RNA-Seq Expression	Lcy09g008840
Synteny	Lcy09g008840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAGCAGGGCAAATCATCTGGAGCTGTAAATTCTCTAAGAGGATTTGGACTTTCTTTTTCCCTTTCTTACGGTGGTTGTTTGATCTTTGTAGGGAAGACTGGAAAACGTTGGACTATTGGGAATACCTAGTTCAAAACCTCTCTACAGAAGACCTCTCTAAAGCTGCAGTTGTTATCTGGTGCTTGTGGAATGAAAGAAACTCATGTAATAGCAAAGCTCAGAAGCCAGATTTCGCCAAATTAGTGAATTACATCAGCAAGTTCATCGAAGATTTTGAAGGAAGAAGCTCTACTAACGTGTCCCAGAGGCAATTGGAGAGTCTTGCGAGTCATCAGAGGTGGAAACCGCCAGCAGAGAATCACTTGAAGATCAATGCCGATGCTTCGTGGAGCGACAGCTCGAGTGTGGGCGGCTTAGGTTGGATCCTCCGTGACTCGCGAGGGTCTTTGATTACAGCGGGATGCAATCGTATTCAGCAAAAATGGACAATTAAGTCCCTTGAAGCTTTAGCAATCCTAGAAGGATTAGAAGCTTACGCCCGTTACCTTGAAGAATCGGAAATCAGCTTCAAACCCTCCCTTGTGGTTGAATCTGACTCTCTAGGCGTCATCAAGGTCCTAAATAGGTTAGATGAAGACCAGTCGGAGCTTGCGTTGATCATCAAAGACATCCGCGAGTTGATCCCCATTATCAACATCTCATCTTTCTCGTTTTGCCCGCGAGGCGAAAATTTAGGGGCTCATAAGATGGCACGCGCTGCTGCTTCCGTTGGCAGTTTCAATTTTTTTGGGCTCTCCTTGTTCCCAAGTTTGAGCGATTTTTTTGTAAATAGGGAGGTGAATCTCCCAAGATGGTTCTCTTCAATTTTGGAAGAGGAGTTGGTTGAGTCTGTTGAGACCTTTTAA

mRNA sequence

ATGGAATCAGCAGGGCAAATCATCTGGAGCTGTAAATTCTCTAAGAGGATTTGGACTTTCTTTTTCCCTTTCTTACGGTGGTTGTTTGATCTTTGTAGGGAAGACTGGAAAACGTTGGACTATTGGGAATACCTAGTTCAAAACCTCTCTACAGAAGACCTCTCTAAAGCTGCAGTTGTTATCTGGTGCTTGTGGAATGAAAGAAACTCATGTAATAGCAAAGCTCAGAAGCCAGATTTCGCCAAATTAGTGAATTACATCAGCAAGTTCATCGAAGATTTTGAAGGAAGAAGCTCTACTAACGTGTCCCAGAGGCAATTGGAGAGTCTTGCGAGTCATCAGAGGTGGAAACCGCCAGCAGAGAATCACTTGAAGATCAATGCCGATGCTTCGTGGAGCGACAGCTCGAGTGTGGGCGGCTTAGGTTGGATCCTCCGTGACTCGCGAGGGTCTTTGATTACAGCGGGATGCAATCGTATTCAGCAAAAATGGACAATTAAGTCCCTTGAAGCTTTAGCAATCCTAGAAGGATTAGAAGCTTACGCCCGTTACCTTGAAGAATCGGAAATCAGCTTCAAACCCTCCCTTGTGGTTGAATCTGACTCTCTAGGCGTCATCAAGGTCCTAAATAGGTTAGATGAAGACCAGTCGGAGCTTGCGTTGATCATCAAAGACATCCGCGAGTTGATCCCCATTATCAACATCTCATCTTTCTCGTTTTGCCCGCGAGGCGAAAATTTAGGGGCTCATAAGATGGCACGCGCTGCTGCTTCCGTTGGCAGTTTCAATTTTTTTGGGCTCTCCTTGTTCCCAAGTTTGAGCGATTTTTTTGTAAATAGGGAGGTGAATCTCCCAAGATGGTTCTCTTCAATTTTGGAAGAGGAGTTGGTTGAGTCTGTTGAGACCTTTTAA

Coding sequence (CDS)

ATGGAATCAGCAGGGCAAATCATCTGGAGCTGTAAATTCTCTAAGAGGATTTGGACTTTCTTTTTCCCTTTCTTACGGTGGTTGTTTGATCTTTGTAGGGAAGACTGGAAAACGTTGGACTATTGGGAATACCTAGTTCAAAACCTCTCTACAGAAGACCTCTCTAAAGCTGCAGTTGTTATCTGGTGCTTGTGGAATGAAAGAAACTCATGTAATAGCAAAGCTCAGAAGCCAGATTTCGCCAAATTAGTGAATTACATCAGCAAGTTCATCGAAGATTTTGAAGGAAGAAGCTCTACTAACGTGTCCCAGAGGCAATTGGAGAGTCTTGCGAGTCATCAGAGGTGGAAACCGCCAGCAGAGAATCACTTGAAGATCAATGCCGATGCTTCGTGGAGCGACAGCTCGAGTGTGGGCGGCTTAGGTTGGATCCTCCGTGACTCGCGAGGGTCTTTGATTACAGCGGGATGCAATCGTATTCAGCAAAAATGGACAATTAAGTCCCTTGAAGCTTTAGCAATCCTAGAAGGATTAGAAGCTTACGCCCGTTACCTTGAAGAATCGGAAATCAGCTTCAAACCCTCCCTTGTGGTTGAATCTGACTCTCTAGGCGTCATCAAGGTCCTAAATAGGTTAGATGAAGACCAGTCGGAGCTTGCGTTGATCATCAAAGACATCCGCGAGTTGATCCCCATTATCAACATCTCATCTTTCTCGTTTTGCCCGCGAGGCGAAAATTTAGGGGCTCATAAGATGGCACGCGCTGCTGCTTCCGTTGGCAGTTTCAATTTTTTTGGGCTCTCCTTGTTCCCAAGTTTGAGCGATTTTTTTGTAAATAGGGAGGTGAATCTCCCAAGATGGTTCTCTTCAATTTTGGAAGAGGAGTTGGTTGAGTCTGTTGAGACCTTTTAA

Protein sequence

MESAGQIIWSCKFSKRIWTFFFPFLRWLFDLCREDWKTLDYWEYLVQNLSTEDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQRQLESLASHQRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDIRELIPIINISSFSFCPRGENLGAHKMARAAASVGSFNFFGLSLFPSLSDFFVNREVNLPRWFSSILEEELVESVETF

Homology

[Close]

BLAST of Lcy09g008840 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-22
Identity = 67/217 (30.88%), Postives = 106/217 (48.85%), Query Frame = 0


Query: 2   ESAGQIIWSCKFSKRIWTFFFPFLRWLFDLCREDWKTLDYWEYLVQNLSTEDLSKAAVVI 61
           E+   I+W CK  K IW    P     F + R +W T +YWE+L+     E+  ++ ++ 
Sbjct: 135 ETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTTKEYWEWLMDKAGEEERRRSMIIA 194

Query: 62  WCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQRQLE-------SLASHQ 121
             +W  RN    K    +   +   I ++I +  G+  TN+ ++  +          +  
Sbjct: 195 CQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQ-DTNLKRKSKDFHPIRRIGDNTRA 254

Query: 122 RWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEALAI 181
           RWKPP  N  K+N DA+W   ++  G+GWILRD +G +I  GC  I+ +  I  LE +AI
Sbjct: 255 RWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAI 314

Query: 182 LEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNR 212
            EGL A  +            + +ESDSL  I +L+R
Sbjct: 315 CEGLRAIRQ-------EHCRPIHLESDSLEAIHLLHR 343

[Close]

BLAST of Lcy09g008840 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-22
Identity = 67/213 (31.46%), Postives = 114/213 (53.52%), Query Frame = 0


Query: 45  LVQNLSTEDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQ 104
           ++   S EDL    +  W +WN RN    + +   F+ ++  ++KF+ +   +S T++S 
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSM 60

Query: 105 RQLESLASHQRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKW 164
              ++L +  +W+PP  +   +NADASWSDS+  GG+GWI+R   G ++ AG   ++   
Sbjct: 61  LH-KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 120

Query: 165 TIKSLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIK 224
            +K LEA AILEGL         + +     L +E+DS  V  +LNR  ED ++   +++
Sbjct: 121 NVKLLEASAILEGLR------NLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVE 180

Query: 225 DIRELIPIINISSFSFCPRGENLGAHKMARAAA 258
           +I  L     I +F+   R  N  AH +A+ A+
Sbjct: 181 EILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lcy09g008840 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 66/213 (30.99%), Postives = 110/213 (51.64%), Query Frame = 0


Query: 52  EDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRS------STNVSQR 111
           E+  ++ ++ W +W  RN    K   P+   +   I ++I +  GR+      STN    
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLH 66

Query: 112 QLESLASH--QRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQK 171
            +  +  +   +WKPP  N  K+N +A+W   ++ GG+GWILRD +G +I A C  I+ +
Sbjct: 67  LIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAE 126

Query: 172 WTIKSLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALII 231
             I  LE +AI EGL A  +            + +ESDSL  I +L+R  +DQ+E+  ++
Sbjct: 127 RNITYLEVMAICEGLRAIRQ-------EHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLL 186

Query: 232 KDIRELIPIINISSFSFCPRGENLGAHKMARAA 257
           ++I +++  + I S     R  N  AH +AR A
Sbjct: 187 EEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy09g008840 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 67/217 (30.88%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 52  EDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGR------SSTNVSQR 111
           E+  ++ ++ W +W  RN    K    +   +   I ++I +  GR       S N    
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLH 66

Query: 112 QLESLASH--QRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQK 171
            +  +  +   RWKPP  N  K+N DA+W   ++ GG+GWILRD +G +I A C  I+ +
Sbjct: 67  LIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTE 126

Query: 172 WTIKSLEALAILEGLEA----YARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSEL 231
             I  LE +AI EGL A    + R +++        + +ESDSL  I +L+R  +DQ+E+
Sbjct: 127 RNITYLEVMAICEGLRAIRQEHCRPIQQEHCR---PIHLESDSLEAIHLLHRQCQDQTEI 186

Query: 232 ALIIKDIRELIPIINISSFSFCPRGENLGAHKMARAA 257
             ++++I +++  + I S     R  N  AH +AR A
Sbjct: 187 IWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy09g008840 vs. ExPASy TrEMBL
Match: A0A803P5M6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-18
Identity = 81/289 (28.03%), Postives = 128/289 (44.29%), Query Frame = 0


Query: 2    ESAGQIIWSCKFSKRIWTFFFPFLRWLFDLCR-EDWKTLDYWEYLVQNLSTEDLSKAAVV 61
            ES G  ++SCK +K IW       R+  D  +  +    DY  +L       D      V
Sbjct: 1039 ESIGHALFSCKHAKDIW----KLSRFRIDFSQAHNMFNGDYLYHLSTIYQQHDFETLLCV 1098

Query: 62   IWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQRQLESLASH------- 121
            +W +W +RN      Q      +V Y SKF EDF   +   +  R + + +SH       
Sbjct: 1099 LWGIWTDRNKVVHGGQPRHPTAIVQYASKFYEDF---NKAKLQNRPVAATSSHHSSPSTS 1158

Query: 122  ------QRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIK 181
                  QRW+PP  N  K+N DA+ +      G+G ILRD +G+++ A    +Q  +   
Sbjct: 1159 ATDQHVQRWRPPVRNGYKLNVDAATNIEQKKLGIGAILRDQQGTVLAALSKAVQGSFKSD 1218

Query: 182  SLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDIR 241
             +EA A+   +     ++ +S+    P   +E+D+  V   LNRL+ D S  + +I DIR
Sbjct: 1219 EMEAKALFHAV----NWVSQSQF---PLTHIETDASRVSNALNRLNSDLSCFSDLIMDIR 1278

Query: 242  ELIPIINISSFSFCPRGENLGAHKMARAAASVG-SFNFFGLSLFPSLSD 276
             L+        +   R  N  AH +A+ A  +   F + G   +P  SD
Sbjct: 1279 CLLSSFPQVLVTHVKRTANQAAHGLAKYALGLDEDFVWIGEIPYPVFSD 1313

[Close]

BLAST of Lcy09g008840 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 5.9e-22
Identity = 67/217 (30.88%), Postives = 106/217 (48.85%), Query Frame = 0


Query: 2   ESAGQIIWSCKFSKRIWTFFFPFLRWLFDLCREDWKTLDYWEYLVQNLSTEDLSKAAVVI 61
           E+   I+W CK  K IW    P     F + R +W T +YWE+L+     E+  ++ ++ 
Sbjct: 135 ETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTTKEYWEWLMDKAGEEERRRSMIIA 194

Query: 62  WCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQRQLE-------SLASHQ 121
             +W  RN    K    +   +   I ++I +  G+  TN+ ++  +          +  
Sbjct: 195 CQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQ-DTNLKRKSKDFHPIRRIGDNTRA 254

Query: 122 RWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEALAI 181
           RWKPP  N  K+N DA+W   ++  G+GWILRD +G +I  GC  I+ +  I  LE +AI
Sbjct: 255 RWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAI 314

Query: 182 LEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNR 212
            EGL A  +            + +ESDSL  I +L+R
Sbjct: 315 CEGLRAIRQ-------EHCRPIHLESDSLEAIHLLHR 343

[Close]

BLAST of Lcy09g008840 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-21
Identity = 67/213 (31.46%), Postives = 114/213 (53.52%), Query Frame = 0


Query: 45  LVQNLSTEDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQ 104
           ++   S EDL    +  W +WN RN    + +   F+ ++  ++KF+ +   +S T++S 
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSM 60

Query: 105 RQLESLASHQRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKW 164
              ++L +  +W+PP  +   +NADASWSDS+  GG+GWI+R   G ++ AG   ++   
Sbjct: 61  LH-KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 120

Query: 165 TIKSLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIK 224
            +K LEA AILEGL         + +     L +E+DS  V  +LNR  ED ++   +++
Sbjct: 121 NVKLLEASAILEGLR------NLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVE 180

Query: 225 DIRELIPIINISSFSFCPRGENLGAHKMARAAA 258
           +I  L     I +F+   R  N  AH +A+ A+
Sbjct: 181 EILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lcy09g008840 vs. NCBI nr
Match: XP_024190234.1 (uncharacterized protein LOC112194221 [Rosa chinensis])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-20
Identity = 78/257 (30.35%), Postives = 128/257 (49.81%), Query Frame = 0


Query: 2    ESAGQIIWSCKFSKRIWTFFFPFLRWLFDLCREDWKTLDYWEYLVQNLSTEDLSKAAVVI 61
            E+    +WSC +SK++W   F FL  ++   RE    +D + ++V+  S E++   +V+ 
Sbjct: 948  ETTIHCMWSCPWSKKVWK--FSFLNGVYKQWREP-SFIDLFAHVVKTSSKEEVELFSVIC 1007

Query: 62   WCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEG--RSSTNVSQRQLESLASHQRWKPP 121
            W LW  RN    +    +   +V   ++++ +F+   RS+ NV++   +      +W+PP
Sbjct: 1008 WLLWKSRNRFKHEGVVEESKHIVWSANEWLNNFQDAQRSNENVTKDATQKRVK-VKWRPP 1067

Query: 122  AENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEALAILEGLE 181
                LK+N DA+         LG ++RD  G L  AG   +    +I ++EALA+  GL 
Sbjct: 1068 TAPKLKLNTDAAIDYKKKKADLGMVVRDGEGKLKCAGHKVLPGNPSIVAIEALAVYHGLL 1127

Query: 182  AYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDIRELIPIINISSFS 241
             Y       E  F+ +LVVESDS  VI  LN+ + D S    ++ DI+ L        + 
Sbjct: 1128 LY------REAGFQ-NLVVESDSTIVIDALNKTELDLSVEGGVLDDIKCLASTFESVPWK 1187

Query: 242  FCPRGENLGAHKMARAA 257
               R  N+ AHKMA+ A
Sbjct: 1188 KVNREGNIAAHKMAKHA 1193

[Close]

BLAST of Lcy09g008840 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-20
Identity = 67/217 (30.88%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 52  EDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGR------SSTNVSQR 111
           E+  ++ ++ W +W  RN    K    +   +   I ++I +  GR       S N    
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLH 66

Query: 112 QLESLASH--QRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQK 171
            +  +  +   RWKPP  N  K+N DA+W   ++ GG+GWILRD +G +I A C  I+ +
Sbjct: 67  LIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTE 126

Query: 172 WTIKSLEALAILEGLEA----YARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSEL 231
             I  LE +AI EGL A    + R +++        + +ESDSL  I +L+R  +DQ+E+
Sbjct: 127 RNITYLEVMAICEGLRAIRQEHCRPIQQEHCR---PIHLESDSLEAIHLLHRQCQDQTEI 186

Query: 232 ALIIKDIRELIPIINISSFSFCPRGENLGAHKMARAA 257
             ++++I +++  + I S     R  N  AH +AR A
Sbjct: 187 IWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy09g008840 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-20
Identity = 66/213 (30.99%), Postives = 110/213 (51.64%), Query Frame = 0


Query: 52  EDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRS------STNVSQR 111
           E+  ++ ++ W +W  RN    K   P+   +   I ++I +  GR+      STN    
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLH 66

Query: 112 QLESLASH--QRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQK 171
            +  +  +   +WKPP  N  K+N +A+W   ++ GG+GWILRD +G +I A C  I+ +
Sbjct: 67  LIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAE 126

Query: 172 WTIKSLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALII 231
             I  LE +AI EGL A  +            + +ESDSL  I +L+R  +DQ+E+  ++
Sbjct: 127 RNITYLEVMAICEGLRAIRQ-------EHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLL 186

Query: 232 KDIRELIPIINISSFSFCPRGENLGAHKMARAA 257
           ++I +++  + I S     R  N  AH +AR A
Sbjct: 187 EEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy09g008840 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-14
Identity = 64/286 (22.38%), Postives = 127/286 (44.41%), Query Frame = 0


Query: 2   ESAGQIIWSCKFSKRIWTF--------------FFPFLRWLFDLCREDWKTLDYWEYLVQ 61
           E+   +++ C F++  W                 +  L W+F+L   +      WE   Q
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGN----PQWEKASQ 362

Query: 62  NLSTEDLSKAAVVIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRS-STNVSQRQ 121
            +          ++W LW  RN    + ++ +  +++      +E++  R+ + +   + 
Sbjct: 363 LVPW--------LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP 422

Query: 122 LESLASHQRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTI 181
             + +S  RW+PP    +K N DA+W+  +   G+GW+LR+ +G +   G   + +  ++
Sbjct: 423 QVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSV 482

Query: 182 KSLEALAILEGLEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDI 241
              E    LE +      L   + ++   ++ ESDS  +I++LN  DE    L   I+D+
Sbjct: 483 LEAE----LEAMRWAVLSLSRFQYNY---VIFESDSQVLIEILNN-DEIWPSLKPTIQDL 542

Query: 242 RELIPIINISSFSFCPRGENLGAHKMARAAASVGSFNFFGLSLFPS 273
           + L+       F F PR  N  A ++AR + S  +++    S+ PS
Sbjct: 543 QRLLSQFTEVKFVFIPREGNTLAERVARESLSFLNYDPKLYSIVPS 568

[Close]

BLAST of Lcy09g008840 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-12
Identity = 48/199 (24.12%), Postives = 89/199 (44.72%), Query Frame = 0


Query: 60  VIWCLWNERNSCNSKAQKPDFAKLVNYISKFIEDFEGRSSTNVSQRQLESL--ASHQRWK 119
           ++W +W   N       +  F   V       +++   + TN  Q    +   + + +W 
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWS 106

Query: 120 PPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEALAILEG 179
           PP  + LK N DAS  + ++V GLGWILR+S+G++I  G  + Q + T +  E   ++  
Sbjct: 107 PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA 166

Query: 180 LEAYARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDIRELIPIINISS 239
           ++A   +  +        ++ E D+  + +++N        L   +  I+  IP      
Sbjct: 167 IQASYGFGHK-------KVIFEGDNQTITRMIN-TKSSNPRLQHFLDTIQSWIPSFESIE 226

Query: 240 FSFCPRGENLGAHKMARAA 257
           FSF  R +N  A  +A+ A
Sbjct: 227 FSFKHREQNGCADFLAKQA 237

[Close]

BLAST of Lcy09g008840 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11
Identity = 66/264 (25.00%), Postives = 112/264 (42.42%), Query Frame = 0


Query: 2   ESAGQIIWSCKFSKRIWTFFFPFL--RWLFDLCREDWKTLDYWEYLVQNLSTEDLSKAAV 61
           E+   I+++C +++ +W      +  +W      ED   L+    L +  +T  L +   
Sbjct: 83  ETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFED--NLNRLIQLSKTQTTNSLDRFLP 142

Query: 62  --VIWCLWNERN--SCNSKAQKPDF--AKLVNYISKFIEDFEGRSSTNV---SQRQLESL 121
             ++W LW  RN      K Q PD+   K +   ++++   E   +TNV   +     S 
Sbjct: 143 FWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSR 202

Query: 122 ASHQRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLE 181
               +W PP E  +K N D+ ++  S     GW +R+  G ++  G  ++Q        E
Sbjct: 203 RDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAE 262

Query: 182 ALAILEGLEA-YARYLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDIREL 241
           AL  L  L+  +A  L          +  ESDS  ++ ++N   ED S L  +I DIR  
Sbjct: 263 ALGFLHALQVIWAHGLR--------YVWFESDSKSLVTLINN-GEDHSLLGTLIYDIRHW 322

Query: 242 IPIINISSFSFCPRGENLGAHKMA 254
           +  +   S  F  R  N  A  +A
Sbjct: 323 MLKLPYCSLEFVNRERNSAADALA 335

[Close]

BLAST of Lcy09g008840 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-08
Identity = 37/128 (28.91%), Postives = 55/128 (42.97%), Query Frame = 0


Query: 61  IWCLWNERNSCNSK---------AQKPDFAKLVNYISKFIEDFEGRSSTNVSQRQLESLA 120
           +W LW  RN    +         AQK +  +   ++   I D     ST   Q       
Sbjct: 1   MWRLWKSRNEFLFQQIDRFPWKVAQKGE-QEATEWVETTINDTANSHST--EQPNDRPSG 60

Query: 121 SHQRWKPPAENHLKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEA 180
             + W PP E +LK N D+ +          WI+RDS G +I +GC ++QQ ++    EA
Sbjct: 61  RSKEWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA 120

[Close]

BLAST of Lcy09g008840 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein )

HSP 1 Score: 55.8 bits (133), Expect = 6.8e-08
Identity = 40/168 (23.81%), Postives = 74/168 (44.05%), Query Frame = 0


Query: 124 LKINADASWSDSSSVGGLGWILRDSRGSLITAGCNRIQQKWTIKSLEALAILEGLEAYAR 183
           +K N DAS  +   V GLGW++R+S+G+++  G  + Q + T +  E  A++  ++A + 
Sbjct: 48  VKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATSA 107

Query: 184 YLEESEISFKPSLVVESDSLGVIKVLNRLDEDQSELALIIKDIRELIPIINISSFSFCPR 243
           +           ++ E D+  V +++N    D   L   +  I+  IP    + F F  R
Sbjct: 108 F-------GYTKVIFEGDNSNVNRLIN-TKSDNPRLKHYLDTIKSWIPSFTSTEFIFTHR 167

Query: 244 GENLGAHKMARAAASVGS----FNFFGLSLFPSLSDFFVNREVNLPRW 288
            +N  A  + + A    +    FN     L+P +        +N   W
Sbjct: 168 EQNQCADTLVKKAIKSSTQWSLFNCCPHFLYPIVLSILGQPHLNFADW 207

The following BLAST results are available for this feature:

BLAST of Lcy09g008840 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g008840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL64	2.9e-22	30.88	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DNV9	6.4e-22	31.46	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.6e-20	30.99	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	1.6e-20	30.88	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A803P5M6	1.9e-18	28.03	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy09g008840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154990.1	5.9e-22	30.88	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022155262.1	1.3e-21	31.46	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_024190234.1	1.5e-20	30.35	uncharacterized protein LOC112194221 [Rosa chinensis]	[more]
XP_022156777.1	3.3e-20	30.88	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	3.3e-20	30.99	uncharacterized protein LOC111013412 [Momordica charantia]	[more]

BLAST of Lcy09g008840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	6.4e-14	22.38	Ribonuclease H-like superfamily protein	[more]
AT5G65005.1	2.7e-12	24.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G02650.1	1.7e-11	25.00	Ribonuclease H-like superfamily protein	[more]
AT4G09775.1	1.4e-08	28.91	BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot...	[more]
AT1G52990.1	6.8e-08	23.81	thioredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 127..256 e-value: 1.1E-20 score: 73.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 122..258 e-value: 9.5E-13 score: 50.3
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 113..258
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 113..258
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 139..254 e-value: 5.61215E-14 score: 65.4132
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 123..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g008840.1	Lcy09g008840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity