Lcy09g004940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g004940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosomal RNA-processing protein 8
Location	Chr09: 4410835 .. 4414603 (+)
RNA-Seq Expression	Lcy09g004940
Synteny	Lcy09g004940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTATTTACCCTCATGTTGCCACCCATTACAATTATCCTACTATTTAACGAAACAACTATTTTAATTTACTCATTTGTATGGTTAACCCTAATTTATTTATGTTATTATTAGGTCCATCTAGGGTGAAAATTAGAACCAACCAAAATGAAAAACCGAACCACATCAAAATCGGTTCGTTTTCTGTGACGGTCTGGTCTATAAAATAAACCGAAATAGTCAGTCGGATCGGTTTACCTTCCATAAAATTCGAGTATAAAACCGAACCGAATCTTTCGCGGGTTTTGCTAAAATCCCAACCCAACGCGCGCCCTAGTTCCAATTACAGCATTCATTCTGCTTCGTCTCTGCTCCACTCTTTTTGATCTCCCCTCTTCCCAACGCGAATTCCTTCATCAAGTGTTTCCTAGGACAACAATGGCAGATGAGGGTCGCTCAAGCAAAAAGCGCAAGAGGGCGAAGCGTCGTGGTGCGGACAAAAGCAAAAATTTGACCAATAATCTAGCGGATGCCACTAAACCCAGTAGCCGAGACGTCGTTGCTTCTGGTTCTTCCGACGGCACAACATCTCAGAGGGTTTCCGGTTCGTCTAGTTTTCTCGATAAGGTTCGACTTCTTTTTTAAAAAAATTTACATGGTTTTGAAATCAATTGGTTTGGGGAACTGAAGGATTAATTGAATGCATTGTGTTTGTGGTTGGGTGATGATGCAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACGTAATGACTTTTTCTTCTATTCTATTGTTTTTCATCTTGTGTACTTCGTTTTTACTGCTGGGCTTGTGTGTTTCTATCAATATTTAAATTAATGAATAACTTTTTAAATGAGTTAAAATACTTGCTATGATATTATATTCACATTAGGTTACATTTTGGTGCTGTTCTTGTAATATTTCATCGAGTTTGTATGGTGTAGTGTAAATGTCGATTTACCAACGGAAATTTAATACCTTGGTTTCTATATCTATGTACTGAATTTTGAGTCAGATTGGCCATATTGGTGATACATTTCCTTCGGTTTTTGTTTTATCGTTTAACTTTAAAATTTCAGTTTCCTATGTTGTCTTAAAACAGAGCTCTTAAACTTAAGTTTTATTAATTTATTTCAAAGTCAGACCCACATTGTTTGAAGCCAGTTGAGATCTTATTTGTTTTATTTTTGTGTTTCAGAGGAGAAGAGGCTCTTAATTATTTCAAAGAAGACCAGGTTCTATTTGATGTGGTAAGTTCTGTTTGTCTGTTCCTACTTCCTAACCGCAGATTATGTTACTATTTAAGAACACGTTTCTTCACGCACGCACACAGTAGAAATTCATCTCGTTCTTCACAACAAAGTCTTTTCAATAGATGAAACTTTAGCATTGGCTATAATAATCATGAAAGTATGGAATTTCTCTGTATTGATCACCGAGGAAGTTTTAGGTGGTGAATTTCATTTACAGGGCCTAGGACTAGGGTTAACTAACATTTTGATGGCTAGTATCATACAGGATACCAAGAGCAAATGTCGCATTGGCCTGAGCTTCCTGTGAATTTAATCATAAAATGGATGAAAGAGCACGATCCTTCATTTATTGTGGCTGATTTTGGCTGTGGTGAGTTTTAGAAAAAAATCTTTGTTTTCCCTTGATTCCTTAAACTAAATATTGAATAAGTATTTGATCCTTAAAGAACATTCATTCTTATTTGTTAATTTTTCTCTTCATTCTTTTTCTCCTTCAAATTGAATTACAGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTAGTTTCTAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATGTAAGCACGTATTTGAACTTAATGTCATCGGATGCATTGAGAATTACAACTGCATTTCCGCATTTTGTGCATGAAAGTTAGCCTTAGCCATATTCATATTATTTCCCCCTTGCTGGAGATCTTGCAGCTGTCTTATAAATTTGTATTGTTAAGCTAAAGCTTAGTTATTGCTTTTTATTTTTTTAACAACTAGCAACTTGTTTAAAAGAGTATACATTTGGCAATATATTTGTTAGGTTGAACCATGGGAGAATAAGTCATGATGAATTGCTATTTGTAATTGGAGGGACATAAAGAAGATGATAGCTTTTATAATACATAAATGTCAACAATCACAAGCATTATTACAAACAGTTATAGTTTAGAGTAATTGGATGATATAATCTATTCCATCACAACAGGTGCAGTTTTAGAATGAAATTCGCTATCTTAGAAAATTTGAGGACTTGGCAAGATTGTTTGGATATTGATATGGCAACGGTTTGAAACATATGTGGCCTTTTGTTTTCCAATCACGTTATTTGAGCAGTCATGGTTGTTATCCTGTTCTCTCAACAATCTACGCCATTTCGGAAAAGGAGAGGTTATTGTGGTAGGCAGGAATCTGCACTGTCTTGTGGGGTCTGCGGGATGAGAGAAACAATAGGACGTGTAGGGGGTTGGATATGGATCCTAGTGAGGTGTGGTCCCTCGCTAAATGTCATGTTTCTCTTTGAGCATTGGTGGCACGGTTATTTTGTAATTTTTCAACAGGTCTAATTTTGCTTGATTGAAGCTCCTTTAGTGGGGTTTCCCCATGCTTGGTTTTTTTGGATGCCTGTGTATTTTTTCATTTTCTCTCAAGGAAAGGTTCGTTATTTATTTAATATATATATATCCCCACTGCTGATGATTATGGATATGTCCGTAGGAGCATTACATTATACCCATTTCTTTCATTTTTCTGTTCATGAAATTTACACTAGACTCATTTGCTGTTGTCTTAAGTAATGAAAAAACCTCTGACCGCTGGCTAATGTTTATGTCCACTGGCAGACACCTCTTGACTCTTCATCTGTTGATGTTGCTGTCTTTTGCCTTTCACTCATGGGGGTCAATTATGCAAGTTACTTGGCGGAAGCACAAAGAGTACTTAAACCACGGTTCGTGGGCTACTTTTGGCTCTATATTAGTGTTATAGCGTGACAATAATTGTCTTCCACTTGGCGGCTGAACTTCCTATTTCCACATGCAGTGGCTGGCTTTTAATAGCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGTGCCGATCCCAATAAGTTCATGAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGTACATTTATTTTCTATTATTTAGCTAGCATTGTCTATTTCTTTCTTGCTGCTAATTTGTAATTGTCATGTGCAGGACTTCTCAAATAAGATGTTCATCTTGTTATACTTCAAGAAAAAGGTTTGTAAATGTTCACAGTAACTGTGAATCCTCATTGAAATGCTAACTGTTGGTTCTGCATATTGTATTTGTACTTGTTCATCTCTGGGTTTAATCATTCTTTTGCCTGTTTTTTATGCAGGATGAGAAAATTTCTAAGGGGAAAGATATTGATTGGCCCCAGCTAAAACCTTGTTTGTACAAACGTCGTTGAGTTTGCATTTTTTCTCTTTCCGGTTATGTTCAAAAAGTTCATATACAAGTACTTGCTAATAGCTTCTATATTATTTAATCTTATCGAAAATCATTTTGTAGTTCATTGATGTAGTCAAATGAAACGTTGGTCTCAGTTGAGCAATTACTTGGATGGTTCATCCCTCCAAAGGGTGTCAGCTAAACGGAATGAGTTGGTTTAGTTGGTTTTCGAAATAGAA

mRNA sequence

GCCATTATTTACCCTCATGTTGCCACCCATTACAATTATCCTACTATTTAACGAAACAACTATTTTAATTTACTCATTTGTATGGTTAACCCTAATTTATTTATGTTATTATTAGGTCCATCTAGGGTGAAAATTAGAACCAACCAAAATGAAAAACCGAACCACATCAAAATCGGTTCGTTTTCTGTGACGGTCTGGTCTATAAAATAAACCGAAATAGTCAGTCGGATCGGTTTACCTTCCATAAAATTCGAGTATAAAACCGAACCGAATCTTTCGCGGGTTTTGCTAAAATCCCAACCCAACGCGCGCCCTAGTTCCAATTACAGCATTCATTCTGCTTCGTCTCTGCTCCACTCTTTTTGATCTCCCCTCTTCCCAACGCGAATTCCTTCATCAAGTGTTTCCTAGGACAACAATGGCAGATGAGGGTCGCTCAAGCAAAAAGCGCAAGAGGGCGAAGCGTCGTGGTGCGGACAAAAGCAAAAATTTGACCAATAATCTAGCGGATGCCACTAAACCCAGTAGCCGAGACGTCGTTGCTTCTGGTTCTTCCGACGGCACAACATCTCAGAGGGTTTCCGGTTCGTCTAGTTTTCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGAGAAGAGGCTCTTAATTATTTCAAAGAAGACCAGGTTCTATTTGATGTGTATCATACAGGATACCAAGAGCAAATGTCGCATTGGCCTGAGCTTCCTGTGAATTTAATCATAAAATGGATGAAAGAGCACGATCCTTCATTTATTGTGGCTGATTTTGGCTGTGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTAGTTTCTAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATACACCTCTTGACTCTTCATCTGTTGATGTTGCTGTCTTTTGCCTTTCACTCATGGGGGTCAATTATGCAAGTTACTTGGCGGAAGCACAAAGAGTACTTAAACCACGTGGCTGGCTTTTAATAGCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGTGCCGATCCCAATAAGTTCATGAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGACTTCTCAAATAAGATGTTCATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTCTAAGGGGAAAGATATTGATTGGCCCCAGCTAAAACCTTGTTTGTACAAACGTCGTTGAGTTTGCATTTTTTCTCTTTCCGGTTATGTTCAAAAAGTTCATATACAAGTACTTGCTAATAGCTTCTATATTATTTAATCTTATCGAAAATCATTTTGTAGTTCATTGATGTAGTCAAATGAAACGTTGGTCTCAGTTGAGCAATTACTTGGATGGTTCATCCCTCCAAAGGGTGTCAGCTAAACGGAATGAGTTGGTTTAGTTGGTTTTCGAAATAGAA

Coding sequence (CDS)

ATGGCAGATGAGGGTCGCTCAAGCAAAAAGCGCAAGAGGGCGAAGCGTCGTGGTGCGGACAAAAGCAAAAATTTGACCAATAATCTAGCGGATGCCACTAAACCCAGTAGCCGAGACGTCGTTGCTTCTGGTTCTTCCGACGGCACAACATCTCAGAGGGTTTCCGGTTCGTCTAGTTTTCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGAGAAGAGGCTCTTAATTATTTCAAAGAAGACCAGGTTCTATTTGATGTGTATCATACAGGATACCAAGAGCAAATGTCGCATTGGCCTGAGCTTCCTGTGAATTTAATCATAAAATGGATGAAAGAGCACGATCCTTCATTTATTGTGGCTGATTTTGGCTGTGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTAGTTTCTAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATACACCTCTTGACTCTTCATCTGTTGATGTTGCTGTCTTTTGCCTTTCACTCATGGGGGTCAATTATGCAAGTTACTTGGCGGAAGCACAAAGAGTACTTAAACCACGTGGCTGGCTTTTAATAGCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGTGCCGATCCCAATAAGTTCATGAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGACTTCTCAAATAAGATGTTCATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTCTAAGGGGAAAGATATTGATTGGCCCCAGCTAAAACCTTGTTTGTACAAACGTCGTTGA

Protein sequence

MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGFVSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR

Homology

[Close]

BLAST of Lcy09g004940 vs. ExPASy Swiss-Prot
Match: Q84JC0 (Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 3.8e-98
Identity = 182/284 (64.08%), Postives = 217/284 (76.41%), Query Frame = 0


Query: 3   DEGRSSKKRKRAKRRGADKSKN---LTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSS 62
           +E ++S+ RKR ++R    SK     T       K + RD         +   +    S+
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSN 63

Query: 63  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVN 122
           FLD +R RLSGG FRMLNEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QMS+WPELPVN
Sbjct: 64  FLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVN 123

Query: 123 LIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 182
            II W+  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSVIACDMSNT L+SSSV
Sbjct: 124 SIINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSV 183

Query: 183 DVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELG 242
           DVAVFCLSLMG NY+SY+ EA RVL+P G LLIAEVKSRFDP+NGGADP  F+KAVC+LG
Sbjct: 184 DVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLG 243

Query: 243 FVSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           F S LKDFSNKMFIL +FKKK++  S  K I WP+LK CLYKRR
Sbjct: 244 FTSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

[Close]

BLAST of Lcy09g004940 vs. ExPASy Swiss-Prot
Match: O43159 (Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-48
Identity = 114/274 (41.61%), Postives = 150/274 (54.74%), Query Frame = 0


Query: 11  RKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSFLDKMRARLSG 70
           R R K +   K+K     + D     +       S    T    + + +   +M  RL G
Sbjct: 189 RNRQKNKRRCKNKFQPPQVPDQAPAEAPTEKTEVSPVPRTDSHEARAGALRARMAQRLDG 248

Query: 71  GHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWMKEHDP 130
             FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I + +++   
Sbjct: 249 ARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPA 308

Query: 131 SFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSLMG 190
           S +VADFGCGD RLA +++N V  FDL S DP V  CDM+  PL+  SVDVAVFCLSLMG
Sbjct: 309 SLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG 368

Query: 191 VNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGFVSALKDFSNK 250
            N   +L EA RVLKP G L +AEV SRF+      D   F++AV +LGF    KD +N 
Sbjct: 369 TNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVSKDLTNS 428

Query: 251 MFILLYFKKKDEKISKGK-DIDWPQLKPCLYKRR 284
            F L  F+K    +   K  +   QL+PCLYKRR
Sbjct: 429 HFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 456

[Close]

BLAST of Lcy09g004940 vs. ExPASy Swiss-Prot
Match: Q9DB85 (Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.2e-47
Identity = 117/278 (42.09%), Postives = 154/278 (55.40%), Query Frame = 0


Query: 9   KKRKRAKRRGADKSKNLTNNLADATKPS--SRDVVASGSSDGTTSQRVSGSSSFLDKMRA 68
           + R++ KRR  +K + L        K S    +V     SD   S+    + +   +M  
Sbjct: 190 RNRQKNKRRHKNKFRPLQTPEQAPPKASIEETEVPPVPKSDSQESR----AGALRARMTQ 249

Query: 69  RLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWMK 128
           RL G  FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I K ++
Sbjct: 250 RLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDLR 309

Query: 129 EHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCL 188
           +   S +VADFGCGD RLA +V+N V  FDL S DP V  CDM+  PL+  SVDVAVFCL
Sbjct: 310 QKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCL 369

Query: 189 SLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGFVSALKD 248
           SLMG N   +L EA RVLK  G L +AEV SRF+      D   F+ AV +LGF    KD
Sbjct: 370 SLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKIIYKD 429

Query: 249 FSNKMFILLYFKKK-DEKISKGKDIDWPQLKPCLYKRR 284
            +N  F L  F+K    ++     +   +L+PCLYKRR
Sbjct: 430 LTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR 457

[Close]

BLAST of Lcy09g004940 vs. ExPASy Swiss-Prot
Match: Q5U4F0 (Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.8e-47
Identity = 113/276 (40.94%), Postives = 153/276 (55.43%), Query Frame = 0


Query: 9   KKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSFLDKMRARL 68
           + R++ KRR  +K + L        K S  +     +    + +  +G  +   +M  RL
Sbjct: 190 RNRQKNKRRHKNKFRPLETQDQVPLKASIEETEVPPAPKSDSQETRAG--ALRARMTQRL 249

Query: 69  SGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWMKEH 128
            G  FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I K +++ 
Sbjct: 250 DGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDLRQK 309

Query: 129 DPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSL 188
             S +VADFGCGD RLA +V+N V  FDL + DP V  CDM+  PL+  SVDVAVFCLSL
Sbjct: 310 PASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVAVFCLSL 369

Query: 189 MGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGFVSALKDFS 248
           MG N   +L EA RVLKP G L +AEV SRF+      D   F+ AV +LGF    KD +
Sbjct: 370 MGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKVIYKDLT 429

Query: 249 NKMFILLYFKKK-DEKISKGKDIDWPQLKPCLYKRR 284
           N  F L  F+K    ++     +   +L+PCLYK R
Sbjct: 430 NSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKHR 457

[Close]

BLAST of Lcy09g004940 vs. ExPASy Swiss-Prot
Match: O44410 (Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-45
Identity = 107/279 (38.35%), Postives = 158/279 (56.63%), Query Frame = 0


Query: 7   SSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSFLDKMRA 66
           SS +  + KR+   K K     +A     +  D VA+   +             + + + 
Sbjct: 83  SSDENTKKKRKRGPKKKKFKPEVAGKAAETENDDVAAAPEEADP----------IAEAKK 142

Query: 67  RLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNLIIKWMK 126
           RL  G FR LNEKLYTCTG EA ++FKED   FD+YH G+ +Q+  WP  P+  II+W++
Sbjct: 143 RLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRWLQ 202

Query: 127 EHDPSFIVADFGCGDARLAKNV--KNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVF 186
                  V D GCG+A++A+ V  K+K+ SFDLV+ +  V +CDMS  P + SS D+ ++
Sbjct: 203 SKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIVIY 262

Query: 187 CLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGFVSAL 246
           CLSLMG N   ++ EA+RVLK  G L IAEV SRF          +F +A+ ++GF  + 
Sbjct: 263 CLSLMGTNLYDFIREARRVLKIGGILKIAEVTSRF------VSIKQFCEAITKMGFEQSH 322

Query: 247 KDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           +      F+++ FKK  EK+ + +     +LKPCLYK+R
Sbjct: 323 RRELTDYFMMMEFKKV-EKVEQKRPYGL-KLKPCLYKKR 343

[Close]

BLAST of Lcy09g004940 vs. ExPASy TrEMBL
Match: A0A6J1C2A0 (Ribosomal RNA-processing protein 8 OS=Momordica charantia OX=3673 GN=LOC111006762 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.3e-143
Identity = 256/284 (90.14%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSR-DVVASGSSDGTTSQRVSGSSS 60
           MADEGRSS+KRKRAKRRG DK+K+ TNN+AD  +PSSR D+V SGSS G   QRVSGSSS
Sbjct: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120

Query: 121 LIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKW+KEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELG 240
           DVAVFCLSLMGVNY SYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           FVSALKDFSNKMFILLYFKKKDEKI KGKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 284

[Close]

BLAST of Lcy09g004940 vs. ExPASy TrEMBL
Match: A0A5A7T472 (Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00030 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.1e-143
Identity = 255/283 (90.11%), Postives = 272/283 (96.11%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEGRSSKKRKRAKRRG DK+K+ T NL DAT+ SS+D+V S SSDG  +QRVSGSSSF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKED++LFD+YHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEK S+GKDIDWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of Lcy09g004940 vs. ExPASy TrEMBL
Match: A0A1S3C8U7 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.1e-143
Identity = 255/283 (90.11%), Postives = 272/283 (96.11%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEGRSSKKRKRAKRRG DK+K+ T NL DAT+ SS+D+V S SSDG  +QRVSGSSSF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKED++LFD+YHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEK S+GKDIDWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of Lcy09g004940 vs. ExPASy TrEMBL
Match: A0A0A0KUD5 (Ribosomal RNA-processing protein 8 OS=Cucumis sativus OX=3659 GN=Csa_5G523020 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.8e-143
Identity = 254/283 (89.75%), Postives = 271/283 (95.76%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEG SS+KRKRAKRRG +KSK  TNNL DAT+P+S+D+V S SSDG  + RVSGSSSF
Sbjct: 1   MADEGSSSRKRKRAKRRGTNKSKVSTNNLPDATEPTSQDIVVSASSDGKKTLRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKED+VLFDVYHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEK S+GKDIDWPQLKPC+YKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCMYKRR 283

[Close]

BLAST of Lcy09g004940 vs. ExPASy TrEMBL
Match: A0A6J1K1X6 (Ribosomal RNA-processing protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111489378 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.9e-143
Identity = 255/284 (89.79%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEGRS++KRKRAKRRG+DK+K  TN++ D T+PS RD+V S SSDG  S+R SGSSSF
Sbjct: 1   MADEGRSNRKRKRAKRRGSDKNKGFTNSIPDVTEPSGRDIVVSTSSDGKKSRRASGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADPNKF++AVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPNKFVRAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDI-DWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEKIS GKDI DWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKISNGKDIVDWPQLKPCLYKRR 284

[Close]

BLAST of Lcy09g004940 vs. NCBI nr
Match: XP_022134543.1 (ribosomal RNA-processing protein 8 isoform X1 [Momordica charantia])

HSP 1 Score: 518.1 bits (1333), Expect = 4.9e-143
Identity = 256/284 (90.14%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSR-DVVASGSSDGTTSQRVSGSSS 60
           MADEGRSS+KRKRAKRRG DK+K+ TNN+AD  +PSSR D+V SGSS G   QRVSGSSS
Sbjct: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120

Query: 121 LIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKW+KEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELG 240
           DVAVFCLSLMGVNY SYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           FVSALKDFSNKMFILLYFKKKDEKI KGKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 284

[Close]

BLAST of Lcy09g004940 vs. NCBI nr
Match: XP_008458812.1 (PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037588.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa] >TYK09324.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 517.7 bits (1332), Expect = 6.3e-143
Identity = 255/283 (90.11%), Postives = 272/283 (96.11%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEGRSSKKRKRAKRRG DK+K+ T NL DAT+ SS+D+V S SSDG  +QRVSGSSSF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKED++LFD+YHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEK S+GKDIDWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of Lcy09g004940 vs. NCBI nr
Match: XP_004142786.1 (ribosomal RNA-processing protein 8 [Cucumis sativus] >KGN51356.1 hypothetical protein Csa_009025 [Cucumis sativus])

HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142
Identity = 254/283 (89.75%), Postives = 271/283 (95.76%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEG SS+KRKRAKRRG +KSK  TNNL DAT+P+S+D+V S SSDG  + RVSGSSSF
Sbjct: 1   MADEGSSSRKRKRAKRRGTNKSKVSTNNLPDATEPTSQDIVVSASSDGKKTLRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKED+VLFDVYHTGYQEQM+HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADP KF+KAVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEK S+GKDIDWPQLKPC+YKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCMYKRR 283

[Close]

BLAST of Lcy09g004940 vs. NCBI nr
Match: XP_022938486.1 (ribosomal RNA-processing protein 8-like [Cucurbita moschata])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 253/283 (89.40%), Postives = 270/283 (95.41%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEGRS+KKRKRAKRR +DK+K+ TN++ DAT+PS +D+V S SSDG  S+R SGSSSF
Sbjct: 1   MADEGRSNKKRKRAKRRRSDKNKDFTNSIPDATEPSGQDIVVSTSSDGKKSRRASGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYL EA+RVLKPRGWLLI+EVKSRFDPSNGGADPN+F++AVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLTEARRVLKPRGWLLISEVKSRFDPSNGGADPNEFVRAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEKIS GKDIDWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKISNGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of Lcy09g004940 vs. NCBI nr
Match: XP_022993338.1 (ribosomal RNA-processing protein 8-like [Cucurbita maxima])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 255/284 (89.79%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MADEGRSSKKRKRAKRRGADKSKNLTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSSF 60
           MADEGRS++KRKRAKRRG+DK+K  TN++ D T+PS RD+V S SSDG  S+R SGSSSF
Sbjct: 1   MADEGRSNRKRKRAKRRGSDKNKGFTNSIPDVTEPSGRDIVVSTSSDGKKSRRASGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVNL 120

Query: 121 IIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180
           IIKW+KEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD
Sbjct: 121 IIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVD 180

Query: 181 VAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGF 240
           VAVFCLSLMGVNYASYLAEA+RVLKPRGWLLI+EVKSRFDPSNGGADPNKF++AVCELGF
Sbjct: 181 VAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPNKFVRAVCELGF 240

Query: 241 VSALKDFSNKMFILLYFKKKDEKISKGKDI-DWPQLKPCLYKRR 284
           VSALKDFSNKMFILLYFKKKDEKIS GKDI DWPQLKPCLYKRR
Sbjct: 241 VSALKDFSNKMFILLYFKKKDEKISNGKDIVDWPQLKPCLYKRR 284

[Close]

BLAST of Lcy09g004940 vs. TAIR 10
Match: AT5G40530.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 359.4 bits (921), Expect = 2.7e-99
Identity = 182/284 (64.08%), Postives = 217/284 (76.41%), Query Frame = 0


Query: 3   DEGRSSKKRKRAKRRGADKSKN---LTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSS 62
           +E ++S+ RKR ++R    SK     T       K + RD         +   +    S+
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSN 63

Query: 63  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVN 122
           FLD +R RLSGG FRMLNEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QMS+WPELPVN
Sbjct: 64  FLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVN 123

Query: 123 LIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 182
            II W+  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSVIACDMSNT L+SSSV
Sbjct: 124 SIINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSV 183

Query: 183 DVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELG 242
           DVAVFCLSLMG NY+SY+ EA RVL+P G LLIAEVKSRFDP+NGGADP  F+KAVC+LG
Sbjct: 184 DVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLG 243

Query: 243 FVSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRR 284
           F S LKDFSNKMFIL +FKKK++  S  K I WP+LK CLYKRR
Sbjct: 244 FTSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

[Close]

BLAST of Lcy09g004940 vs. TAIR 10
Match: AT5G40530.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 318.9 bits (816), Expect = 4.0e-87
Identity = 169/284 (59.51%), Postives = 201/284 (70.77%), Query Frame = 0


Query: 3   DEGRSSKKRKRAKRRGADKSKN---LTNNLADATKPSSRDVVASGSSDGTTSQRVSGSSS 62
           +E ++S+ RKR ++R    SK     T       K + RD         +   +    S+
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSN 63

Query: 63  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPELPVN 122
           FLD +R RLSGG FRMLNEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QMS+WPELPVN
Sbjct: 64  FLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVN 123

Query: 123 LIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 182
            II W+  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSVIACDMSNT L+SSSV
Sbjct: 124 SIINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSV 183

Query: 183 DVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELG 242
           DVAVFCLSLMG NY+SY+ EA RVL+P G LLIAEVKSRFDP+NGGADP  F+KAVC+LG
Sbjct: 184 DVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLG 243

Query: 243 FVSALK-----------------------DFSNKMFILLYFKKK 261
           F S LK                       DFSNKMFIL +FKKK
Sbjct: 244 FTSVLKVQSFLLLFFISTIRKKLIWFFEQDFSNKMFILFHFKKK 287

The following BLAST results are available for this feature:

BLAST of Lcy09g004940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JC0	3.8e-98	64.08	Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 ...	[more]
O43159	1.2e-48	41.61	Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2	[more]
Q9DB85	5.2e-47	42.09	Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1	[more]
Q5U4F0	6.8e-47	40.94	Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV...	[more]
O44410	2.2e-45	38.35	Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 ...	[more]

BLAST of Lcy09g004940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2A0	2.3e-143	90.14	Ribosomal RNA-processing protein 8 OS=Momordica charantia OX=3673 GN=LOC11100676...	[more]
A0A5A7T472	3.1e-143	90.11	Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C8U7	3.1e-143	90.11	Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 ...	[more]
A0A0A0KUD5	6.8e-143	89.75	Ribosomal RNA-processing protein 8 OS=Cucumis sativus OX=3659 GN=Csa_5G523020 PE...	[more]
A0A6J1K1X6	8.9e-143	89.79	Ribosomal RNA-processing protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111489378 P...	[more]

BLAST of Lcy09g004940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134543.1	4.9e-143	90.14	ribosomal RNA-processing protein 8 isoform X1 [Momordica charantia]	[more]
XP_008458812.1	6.3e-143	90.11	PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037...	[more]
XP_004142786.1	1.4e-142	89.75	ribosomal RNA-processing protein 8 [Cucumis sativus] >KGN51356.1 hypothetical pr...	[more]
XP_022938486.1	1.8e-142	89.40	ribosomal RNA-processing protein 8-like [Cucurbita moschata]	[more]
XP_022993338.1	1.8e-142	89.79	ribosomal RNA-processing protein 8-like [Cucurbita maxima]	[more]

BLAST of Lcy09g004940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40530.1	2.7e-99	64.08	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT5G40530.2	4.0e-87	59.51	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007823	Ribosomal RNA processing protein 8	PFAM	PF05148	Methyltransf_8	coord: 62..283 e-value: 3.1E-77 score: 259.3
IPR007823	Ribosomal RNA processing protein 8	PANTHER	PTHR12787	UNCHARACTERIZED	coord: 9..283
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 116..283 e-value: 4.6E-56 score: 191.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..58
None	No IPR available	CDD	cd02440	AdoMet_MTases	coord: 134..212 e-value: 9.83506E-4 score: 35.8687
IPR042036	Ribosomal RNA-processing protein 8, N-terminal domain	GENE3D	1.10.10.2150		coord: 64..114 e-value: 1.5E-25 score: 91.1
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 99..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g004940.1	Lcy09g004940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008168	methyltransferase activity